mRNA_M-pyrifera_M_contig97600.22483.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97600.22483.1
Unique NamemRNA_M-pyrifera_M_contig97600.22483.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A7S4I2J4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I2J4_9EUKA)

HSP 1 Score: 143 bits (360), Expect = 1.200e-41
Identity = 75/127 (59.06%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEG-----KGCVLVTKKKSSAARRSPASAHNRT-FELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKISQ 363
            MS ELTWQLI+KHN F+ RRDG  F++EPNNL NK++FK+SGLAN   VGV+ N +      KGCVL TK + S+ RR PA   NRT F+ +   RVA+ IK+ETQGK YR DLT+AALARWS+I++
Sbjct:    1 MSSELTWQLIRKHNCFITRRDGATFTSEPNNLMNKHAFKWSGLANKDAVGVDFNRDANGNVTKGCVLSTKSRKSSLRRQPAKTWNRTTFKTSDFRRVAKAIKSETQGKYYRRDLTNAALARWSQINR 127          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A1Y1XV27_9FUNG (Ribosomal protein L28 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XV27_9FUNG)

HSP 1 Score: 112 bits (280), Expect = 2.190e-29
Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKI 357
            MS +LTW L+K ++SFL++R+GV F+TEPNNLTN NSFKYSGLANN  VGV     GKG VL TKK+S +A + P+ +  +T     S R A+ I   T    YR DL  AAL R S I
Sbjct:    1 MSADLTWLLVKDNSSFLVKRNGVQFTTEPNNLTNLNSFKYSGLANNKVVGVTAAPSGKGVVLTTKKQSVSATK-PSKSFQKTSVSGSSRRAAKVIVNSTARSGYRADLRKAALGRLSAI 118          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A1Y1Z5T5_9FUNG (Putative ribosomal protein L28 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z5T5_9FUNG)

HSP 1 Score: 110 bits (275), Expect = 1.250e-28
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKI 357
            MS +LTW L+K ++SFL++R GV F+TEPNNLTN NSFKYSGLAN   VGVE N  GKG VL TKK+S ++ + P  +  +      S R A++I   T    YR DL  AAL R S I
Sbjct:    1 MSADLTWLLVKDNSSFLVKRSGVQFTTEPNNLTNLNSFKYSGLANAKVVGVEANASGKGVVLTTKKQSVSSGK-PGKSFQKVAISGSSRRAAKSIVNATARSGYRADLRKAALGRLSAI 118          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A1Y1X9A3_9FUNG (60S ribosomal protein l28 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1X9A3_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 1.780e-28
Identity = 62/119 (52.10%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKI 357
            MS +LTW L+K ++SFL++R+GV F+TEPNNLTN NSFKYSGLAN    G+  N  GKG VL TKK++ +A + PA +  R      S R AR I   T    YR DL  AAL R S I
Sbjct:    1 MSADLTWLLVKDNSSFLVKRNGVQFTTEPNNLTNLNSFKYSGLANTKAFGISANPSGKGVVLSTKKQAVSASK-PAKSSQRVAISGSSRRAARAIVNATARSGYRADLRKAALGRLSAI 118          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A1D1ZMD1_9ARAE (60S ribosomal protein L28 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZMD1_9ARAE)

HSP 1 Score: 101 bits (252), Expect = 4.470e-25
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKISQ 363
            MS +L WQL+K  +SFL++R+G  F++EPNNLTN NSFKYSGLAN   +G+      +G  +VTKK ++ A   PA A N+     G  R A++  A+    +YR DL  AALAR S + Q
Sbjct:    1 MSDDLIWQLLKSRSSFLVKRNGAEFNSEPNNLTNLNSFKYSGLANKKAIGITTGPNNRGVTVVTKK-TNVAYYKPAKAINKVTLSKGIRRSAKSFTAQFTKSHYRPDLRKAALARISAVYQ 120          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A9UDT8_9BILA (60S ribosomal protein L28 (Fragment) n=1 Tax=Flustra foliacea TaxID=478208 RepID=A9UDT8_9BILA)

HSP 1 Score: 100 bits (248), Expect = 9.790e-25
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNR-TFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKI 357
            MS  L W +I+K++SFL++R+ VL++ EPNNL   NSF+++GL    TVGVE N +GKG  LVTK K S     PA  +NR   +   S R  +TI    +G+ YR DL SAAL R S I
Sbjct:    1 MSSALQWSIIRKNSSFLLKRNDVLYTKEPNNLRGINSFRFNGLVQEKTVGVEANADGKGVTLVTKNKKS---NQPAKNYNRIALKKNNSRRAFKTIMKTLKGQGYRKDLQSAALRRASTI 117          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A1Y1YJU1_9FUNG (Ribosomal protein L28e n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YJU1_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 1.390e-24
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDL 324
            MS +LTW L+K ++SFL++R+GV F+TEPNNLTN NSFKYSGLANN  VGV  +  GKG VL TKK+S +A + PA A N+      S R A+ I        YR DL
Sbjct:    1 MSADLTWLLVKDNSSFLVKRNGVQFTTEPNNLTNLNSFKYSGLANNKVVGVAAS--GKGVVLTTKKQSVSAAK-PAKAFNKVTISGSSRRSAKVIANSIARSGYRADL 105          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A7S0L8E0_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S0L8E0_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 2.670e-24
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIR-RDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKISQ 363
            MS  L WQ+I+ ++ FL++ R+GV FS+EPNNLT  NSFK+SGLAN+  VGV  N +G G  L  K K  +  + PA A  +        R A+TI   T G +YR DL +AALAR++ I++
Sbjct:    1 MSASLVWQIIRNNSCFLVKQRNGVSFSSEPNNLTKINSFKFSGLANDRVVGVNANADG-GVTLAVKSKKKSKTQKPAKAFTKIVLKKDFRRTAKTIINNTSGNHYRSDLKAAALARYTAIAK 121          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A397TK07_9GLOM (Ribosomal L28e/Mak16 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TK07_9GLOM)

HSP 1 Score: 99.0 bits (245), Expect = 5.240e-24
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEIN-TEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQGKNYRGDLTSAALARWSKISQ 363
            MS +LTW LIK  +SFL++R+G  F++EPNNLTN NSFKYSGLAN   +GV+   T  KG  +VTKK + A+ + PA + N+     G  + A++  ++    +YR DL  AALAR S I Q
Sbjct:    1 MSDDLTWLLIKNRSSFLVKRNGAEFNSEPNNLTNLNSFKYSGLANKKAIGVKDGPTNYKGVTVVTKKTNVASYK-PAKSINKVILTKGVRKSAKSFTSQFTKSHYRPDLRKAALARISAIYQ 121          
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Match: A0A433D7L2_9FUNG (Ribosomal protein L28e n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D7L2_9FUNG)

HSP 1 Score: 98.2 bits (243), Expect = 1.080e-23
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVGVEINTEGKGCVLVTKKKSSAARRSPASAHN---RTFELT---GSSRVARTIKAETQGKNYRGDLTSAALARWSKISQI 366
            MS +L W L+K +N++L++R GV FS+EP NLTN N+FKYSGLANN TVGV     GKG  L+TKK+         SAHN   R  ++T   GS R A ++        YR DL  A++A  +++S I
Sbjct:    1 MSADLVWSLVKNNNAYLVKRPGVQFSSEPGNLTNLNTFKYSGLANNKTVGVVPAVSGKGIELITKKQK-------LSAHNVNKRVNKITIAKGSRRTALSVANIVARNGYRPDLRQASIAALARVSAI 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97600.22483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I2J4_9EUKA1.200e-4159.06Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A1Y1XV27_9FUNG2.190e-2952.94Ribosomal protein L28 n=1 Tax=Basidiobolus meristo... [more]
A0A1Y1Z5T5_9FUNG1.250e-2852.10Putative ribosomal protein L28 n=1 Tax=Basidiobolu... [more]
A0A1Y1X9A3_9FUNG1.780e-2852.1060S ribosomal protein l28 n=1 Tax=Basidiobolus mer... [more]
A0A1D1ZMD1_9ARAE4.470e-2546.2860S ribosomal protein L28 n=1 Tax=Anthurium amnico... [more]
A9UDT8_9BILA9.790e-2547.5060S ribosomal protein L28 (Fragment) n=1 Tax=Flust... [more]
A0A1Y1YJU1_9FUNG1.390e-2453.70Ribosomal protein L28e n=1 Tax=Basidiobolus merist... [more]
A0A7S0L8E0_9EUKA2.670e-2445.90Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
A0A397TK07_9GLOM5.240e-2447.54Ribosomal L28e/Mak16 n=1 Tax=Glomus cerebriforme T... [more]
A0A433D7L2_9FUNG1.080e-2345.31Ribosomal protein L28e n=1 Tax=Jimgerdemannia flam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97600contigM-pyrifera_M_contig97600:82..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score106.3
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog78898.MVEG_01933T0
KEGG koko:K02903
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Ribosomal L28e protein family
EggNOG OGs1GU5N@112252,3A3PZ@33154,3P3VN@4751,KOG3412@1,KOG3412@2759
COG Functional cat.J
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.253936-CDS-M-pyrifera_M_contig97600:81..3271622816893.253936-CDS-M-pyrifera_M_contig97600:81..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97600 82..327 +
1692278240.6433988-CDS-M-pyrifera_M_contig97600:81..3271692278240.6433988-CDS-M-pyrifera_M_contig97600:81..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97600 82..327 +
1622816893.265304-CDS-M-pyrifera_M_contig97600:433..5651622816893.265304-CDS-M-pyrifera_M_contig97600:433..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97600 434..565 +
1692278240.6661978-CDS-M-pyrifera_M_contig97600:433..5651692278240.6661978-CDS-M-pyrifera_M_contig97600:433..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97600 434..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97600.22483.1prot_M-pyrifera_M_contig97600.22483.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97600 82..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97600.22483.1

>prot_M-pyrifera_M_contig97600.22483.1 ID=prot_M-pyrifera_M_contig97600.22483.1|Name=mRNA_M-pyrifera_M_contig97600.22483.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MSQELTWQLIKKHNSFLIRRDGVLFSTEPNNLTNKNSFKYSGLANNSTVG
VEINTEGKGCVLVTKKKSSAARRSPASAHNRTFELTGSSRVARTIKAETQ
GKNYRGDLTSAALARWSKISQIKSA*
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mRNA from alignment at M-pyrifera_M_contig97600:82..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97600.22483.1 ID=mRNA_M-pyrifera_M_contig97600.22483.1|Name=mRNA_M-pyrifera_M_contig97600.22483.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=484bp|location=Sequence derived from alignment at M-pyrifera_M_contig97600:82..565+ (Macrocystis pyrifera P11B4 male)
ATGTCGCAGGAGCTTACTTGGCAGCTTATCAAGAAGCACAACAGCTTCTT GATCAGGCGCGATGGCGTCCTGTTCAGCACTGAGCCCAACAACCTCACCA ACAAGAACTCCTTCAAGTACAGCGGCCTTGCTAACAACAGCACCGTCGGT GTGGAGATCAACACTGAGGGCAAGGGATGCGTTCTCGTGACCAAGAAGAA GAGCTCTGCTGCCCGCCGCAGCCCCGCTTCGGCCCACAACCGCACTGTGC TCAGGAAGGACTTCCGGTACGCCGACGCTCTCCCTCTCCTCTCCCTCCCC CTCTTTACGTTGCTCTGGAGTGAGCTGGCGGGAAGTGGGGGCTATGATGA AGTTCGAACTGACAGGAAGCAGCCGCGTGGCGAGGACCATCAAGGCCGAG ACCCAGGGCAAGAACTACCGTGGAGACCTCACCTCTGCTGCTCTTGCCAG GTGGTCGAAGATCAGCCAGATCAAGTCTGCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97600:82..565+

>mRNA_M-pyrifera_M_contig97600.22483.1 ID=mRNA_M-pyrifera_M_contig97600.22483.1|Name=mRNA_M-pyrifera_M_contig97600.22483.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig97600:82..565+ (Macrocystis pyrifera P11B4 male)
ATGTCGCAGGAGCTTACTTGGCAGCTTATCAAGAAGCACAACAGCTTCTT
GATCAGGCGCGATGGCGTCCTGTTCAGCACTGAGCCCAACAACCTCACCA
ACAAGAACTCCTTCAAGTACAGCGGCCTTGCTAACAACAGCACCGTCGGT
GTGGAGATCAACACTGAGGGCAAGGGATGCGTTCTCGTGACCAAGAAGAA
GAGCTCTGCTGCCCGCCGCAGCCCCGCTTCGGCCCACAACCGCACTATGT
CGCAGGAGCTTACTTGGCAGCTTATCAAGAAGCACAACAGCTTCTTGATC
AGGCGCGATGGCGTCCTGTTCAGCACTGAGCCCAACAACCTCACCAACAA
GAACTCCTTCAAGTACAGCGGCCTTGCTAACAACAGCACCGTCGGTGTGG
AGATCAACACTGAGGGCAAGGGATGCGTTCTCGTGACCAAGAAGAAGAGC
TCTGCTGCCCGCCGCAGCCCCGCTTCGGCCCACAACCGCACTTTCGAACT
GACAGGAAGCAGCCGCGTGGCGAGGACCATCAAGGCCGAGACCCAGGGCA
AGAACTACCGTGGAGACCTCACCTCTGCTGCTCTTGCCAGGTGGTCGAAG
ATCAGCCAGATCAAGTCTGCGTAATTCGAACTGACAGGAAGCAGCCGCGT
GGCGAGGACCATCAAGGCCGAGACCCAGGGCAAGAACTACCGTGGAGACC
TCACCTCTGCTGCTCTTGCCAGGTGGTCGAAGATCAGCCAGATCAAGTCT
GCGTAA
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