mRNA_M-pyrifera_M_contig9755.22473.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9755.22473.1
Unique NamemRNA_M-pyrifera_M_contig9755.22473.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9755.22473.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.440e-43
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:   10 VAYDRLVADFEALECIRDRLRRRRAGIG--EPPDYAS--GALAAEEAAERYLTKMPAAQQTREAVTACWRALSEHQHFCQLTTPEKLQMINQRPLQPVAVHLMIE 312
            V YDRLVADFEALEC+R +  RR AG    EPPD  S  GALAAEEA ERYL+KMPAA++TREAV+ACWRALSEH+HFC+LTTPEKLQMIN RP Q VAVHL+ E
Sbjct:    4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9755.22473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U4_ECTSI2.440e-4374.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9755contigM-pyrifera_M_contig9755:2987..5074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase II, Rpb4
Ec32 orthologEc-06_000280.1
Exons3
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9755.22473.1prot_M-pyrifera_M_contig9755.22473.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9755 2987..5074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.7106702-CDS-M-pyrifera_M_contig9755:2986..30641622816892.7106702-CDS-M-pyrifera_M_contig9755:2986..3064Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9755 2987..3064 -
1692278240.3140543-CDS-M-pyrifera_M_contig9755:2986..30641692278240.3140543-CDS-M-pyrifera_M_contig9755:2986..3064Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9755 2987..3064 -
1622816892.7235777-CDS-M-pyrifera_M_contig9755:4100..42141622816892.7235777-CDS-M-pyrifera_M_contig9755:4100..4214Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9755 4101..4214 -
1692278240.323914-CDS-M-pyrifera_M_contig9755:4100..42141692278240.323914-CDS-M-pyrifera_M_contig9755:4100..4214Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9755 4101..4214 -
1622816892.7360559-CDS-M-pyrifera_M_contig9755:4885..50741622816892.7360559-CDS-M-pyrifera_M_contig9755:4885..5074Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9755 4886..5074 -
1692278240.3323438-CDS-M-pyrifera_M_contig9755:4885..50741692278240.3323438-CDS-M-pyrifera_M_contig9755:4885..5074Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9755 4886..5074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9755.22473.1

>prot_M-pyrifera_M_contig9755.22473.1 ID=prot_M-pyrifera_M_contig9755.22473.1|Name=mRNA_M-pyrifera_M_contig9755.22473.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
YYRVAYDRLVADFEALECIRDRLRRRRAGIGEPPDYASGALAAEEAAERY
LTKMPAAQQTREAVTACWRALSEHQHFCQLTTPEKLQMINQRPLQPVAVH
LMIEDCHRRFRDDEIVAELIALLETHV
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mRNA from alignment at M-pyrifera_M_contig9755:2987..5074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9755.22473.1 ID=mRNA_M-pyrifera_M_contig9755.22473.1|Name=mRNA_M-pyrifera_M_contig9755.22473.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2088bp|location=Sequence derived from alignment at M-pyrifera_M_contig9755:2987..5074- (Macrocystis pyrifera P11B4 male)
TATTACAGGGTCGCGTACGATAGGCTTGTGGCGGATTTCGAGGCGCTGGA
GTGTATCCGCGATCGACTGCGACGCCGAAGAGCGGGCATAGGAGAGCCCC
CAGATTATGCCAGCGGAGCACTTGCGGCCGAGGAAGCTGCGGAGCGGTAC
CTAACCAAGATGCCTGCTGCACAACAGACTCGAGAAGCGGTAAGCGAGGA
ACCGCTGATGCCACGGTGCCAGGGACATCTTGTTTTTTTTGTTTTTTTGC
CTTCTTGTCGACTTGCCTTGAGCGCACCTTTGAGCTTATGGTATCATGTG
ATACTTGATAGTTTATCATGGTGGAGTTGCTGTGTTTGTGTTCGCAGCGT
CCAGGAGATGTCAACGGGAGACAGAAAACTCTCATAGGCTTTGAGCCACC
GCATTCGTTATCTTGCTTATTTCACGCGGTGCATTCGGGTGCGCCTGAGC
AGATCCTGTCCGGCGAGACTTTGTCCAACTCTCTTGCAAACAGCAATACT
GATATAGCAGCACTCGTACCTCGCAGTACAGCAGCAGTGTATTTGTATCA
TCCGAGGCACTCAGACTGCCGTTTTATAGCTGTATACAACAGGTCTCGCT
TTCACTCGGACATCCTGGTCTCCTATGCAAACAGTGCCGCAAACAATCGA
TTTTGTTTTCTTGCCCGCATCTTACTCTGTACGCCGTACTCGTACAAGTA
GCCAATACCGGTATGGTTGTACAGGGTACAGGAATACCCAGGTGCCTGGT
ATAAGTCAATACTACAAGCGGCAGTCTCACTCGACACTTGCCGACAGTCC
CGTGGCTGCTGAGCTGAATACCCTCTGGTACCTGGTACCTGGTATGCACT
GTATATGCAGGTGACCGCTTGCTGGCGAGCGTTGTCCGAGCACCAGCATT
TCTGCCAACTCACCACGCCGGAGAAGCTCCAGATGATCAACCAACGTCCC
TTGCAGCCTGTAGCGGTGCATTTGGTGAGCCTTGAGTATATTGATACAGA
TGTCTTGAAATTAAATGCCTTGACTGTCTTGAATATCTCGATGGCCGCTT
GGTCTCTTCGGGATATGATATTTCAAGTTTCGATCCTCGATGCTATTCGT
GAGCCACGCGTCGGTACAGCAGCAATGCGGGTACGTAAGGGCGTATGGAC
TGTTGTCAAAGTTGCCGCACCATCCGCGGGGGCCATCACAAGCAACTGCT
GTAGTACTGATGTATGCAGAATACCTGGCAAGGCGTAAGGCGTTTCATGT
GAGCTATATATAACAGATAGAGTTGACCTGCAGCATCATCTTGCAACGTC
ATAAGGACTCGAGTAAGAAATGCGGCGGCTGCTTCGTAGTCGGCTGCTTT
CCGTGGTTAGGCTTCGTCAGCACGTAGCTATCAAACAGCAGCACGCCCAC
ACTCACCACCACCACGCCACACACAACAGCAGCAGTCACGTAGTTGTTCT
GAGTTTGGATGGCACCATGGACAGCAGAGGCTTGACTCGTACTTCATATC
CGTATGTGTATTGGCCTTCTCGTCCTCTAGCGTCGTGCGCTGTGTTATCT
ACAATATATAATATCTGCACATCCAGTCAAACAAACTACCAGTATGGTAG
CCTACAGCAGTTGTAAAATTATGTTCCTAAACAATGTATCAACATAAAAT
CGAAACGTCGTATCATACCGGATTATATGTCTTATACTCGGAAGTATTGT
AGTCATGACATCAGAACACAGCATAGCGAACGTTGCTTAGATAACGCCAG
GTATATACTTCGAAGTTAATACGTACCCACAATTAGCAATTAATAATGGT
GCGCATGGGAATGGTCATAGTAGCCCCAAGAGCGCACGGGATTCTGCTGT
CGGATGCCCTCGCTCTCCGCCTCCACTCCCGCGCGAGATTATCCACGCAC
TCAAGTTCAACATTGCAGTACATATCAGTACACAGCAGTGTACGTATAAT
TTCGATGCCGGGTGTGTCTGTCTTCCGATGTGCTTCTCGTTTACTTTTGG
CATGATGAAGATGATCGAAGACTGCCACAGAAGATTCCGTGACGACGAGA
TAGTGGCGGAGCTCATCGCGCTCTTGGAAACGCACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9755:2987..5074-

>mRNA_M-pyrifera_M_contig9755.22473.1 ID=mRNA_M-pyrifera_M_contig9755.22473.1|Name=mRNA_M-pyrifera_M_contig9755.22473.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig9755:2987..5074- (Macrocystis pyrifera P11B4 male)
TATTACAGGGTCGCGTACGATAGGCTTGTGGCGGATTTCGAGGCGCTGGA
GTGTATCCGCGATCGACTGCGACGCCGAAGAGCGGGCATAGGAGAGCCCC
CAGATTATGCCAGCGGAGCACTTGCGGCCGAGGAAGCTGCGGAGCGGTAC
CTAACCAAGATGCCTGCTGCACAACAGACTCGAGAAGCGTATTACAGGGT
CGCGTACGATAGGCTTGTGGCGGATTTCGAGGCGCTGGAGTGTATCCGCG
ATCGACTGCGACGCCGAAGAGCGGGCATAGGAGAGCCCCCAGATTATGCC
AGCGGAGCACTTGCGGCCGAGGAAGCTGCGGAGCGGTACCTAACCAAGAT
GCCTGCTGCACAACAGACTCGAGAAGCGGTGACCGCTTGCTGGCGAGCGT
TGTCCGAGCACCAGCATTTCTGCCAACTCACCACGCCGGAGAAGCTCCAG
ATGATCAACCAACGTCCCTTGCAGCCTGTAGCGGTGCATTTGGTGACCGC
TTGCTGGCGAGCGTTGTCCGAGCACCAGCATTTCTGCCAACTCACCACGC
CGGAGAAGCTCCAGATGATCAACCAACGTCCCTTGCAGCCTGTAGCGGTG
CATTTGATGATCGAAGACTGCCACAGAAGATTCCGTGACGACGAGATAGT
GGCGGAGCTCATCGCGCTCTTGGAAACGCACGTGATGATCGAAGACTGCC
ACAGAAGATTCCGTGACGACGAGATAGTGGCGGAGCTCATCGCGCTCTTG
GAAACGCACGTG
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