prot_M-pyrifera_M_contig9755.22473.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig9755.22473.1
Unique Nameprot_M-pyrifera_M_contig9755.22473.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length127
Homology
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BLAST of mRNA_M-pyrifera_M_contig9755.22473.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.440e-43
Identity = 78/105 (74.29%), Postives = 87/105 (82.86%), Query Frame = 0 
Query:    4 VAYDRLVADFEALECIRDRLRRRRAGIG--EPPDYAS--GALAAEEAAERYLTKMPAAQQTREAVTACWRALSEHQHFCQLTTPEKLQMINQRPLQPVAVHLMIE 104
            V YDRLVADFEALEC+R +  RR AG    EPPD  S  GALAAEEA ERYL+KMPAA++TREAV+ACWRALSEH+HFC+LTTPEKLQMIN RP Q VAVHL+ E
Sbjct:    4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSGSSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSE 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9755.22473.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7U4_ECTSI2.440e-4374.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 11..124
e-value: 1.7E-13
score: 51.0
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 4..127
e-value: 1.8E-14
score: 55.7
IPR038846DNA-directed RNA polymerase III subunit RPC9PANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 8..124
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 9..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9755contigM-pyrifera_M_contig9755:2987..5074 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9755.22473.1mRNA_M-pyrifera_M_contig9755.22473.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig9755 2987..5074 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig9755.22473.1 ID=prot_M-pyrifera_M_contig9755.22473.1|Name=mRNA_M-pyrifera_M_contig9755.22473.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
YYRVAYDRLVADFEALECIRDRLRRRRAGIGEPPDYASGALAAEEAAERY
LTKMPAAQQTREAVTACWRALSEHQHFCQLTTPEKLQMINQRPLQPVAVH
LMIEDCHRRFRDDEIVAELIALLETHV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005574RPB4/RPC9
IPR038324Rpb4/RPC9_sf
IPR038846RPC9
IPR010997HRDC-like_sf