mRNA_M-pyrifera_M_contig97530.22469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97530.22469.1
Unique NamemRNA_M-pyrifera_M_contig97530.22469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A7S1WYB5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WYB5_ALECA)

HSP 1 Score: 56.2 bits (134), Expect = 1.220e-7
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 MAAGDDSDVEEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPV 183
            MA+       EEV PE  C + M ++++PVT+SCGHTF +  L ++L G   +C +CRAPV
Sbjct:   11 MASAQGDAGSEEVPPEFECTICMKLLLDPVTVSCGHTFCRVCLEQSL-GYRGLCAVCRAPV 70          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A8J2B3Y6_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2B3Y6_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 5.910e-7
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 MAA--GDDSDV-----EEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPV 183
            MAA  GDD DV        + PE  C L + ++++PV++SCGHTF +S +  +L    S CPLCR P+
Sbjct:    1 MAASPGDDPDVLAAGGPSGISPEFECALCLRLLLDPVSVSCGHTFCRSCIETSL-DHRSACPLCRQPI 67          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A2I0AMS9_9ASPA (RING-type E3 ubiquitin transferase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AMS9_9ASPA)

HSP 1 Score: 53.9 bits (128), Expect = 8.190e-7
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   13 DDSDVEEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPVHSS 192
            DD D++    P   C LT  +MV+PV+ SCGH FE+ AL  +   G   C +C AP+ S+
Sbjct:  189 DDGDIKPS--PFFYCPLTCDLMVDPVSGSCGHCFERRALEASFQEGNRFCTICNAPLTST 246          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A6T1BC94_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1BC94_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-6
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   31 EEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPV 183
            E+V PE  C + M +M++PVT+SCGHTF +  L ++L G   +C +CR+PV
Sbjct:    9 EDVPPEFECTICMKLMLDPVTVSCGHTFCRVCLEQSL-GYRGLCAVCRSPV 58          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A8J1Z118_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1Z118_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 2.060e-6
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   31 EEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPV 183
            EEV  E  C L + +++EPV++SCGHTF +S +  A L   + CPLCR P+
Sbjct:    3 EEVSSEFECALCLRLLLEPVSVSCGHTFCRSCIE-ASLDHRAACPLCRQPI 52          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A812KBY1_9DINO (LONRF3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KBY1_9DINO)

HSP 1 Score: 52.4 bits (124), Expect = 2.790e-6
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   28 EEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPV 183
            +E + P L C + M +++EPV++ CGHTF ++ L +AL G  ++C +CRAPV
Sbjct:    3 DESIPPHLECAICMKLLLEPVSVPCGHTFCQTCLDQAL-GYRNLCAVCRAPV 53          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A812WVL6_9DINO (LONRF3 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WVL6_9DINO)

HSP 1 Score: 52.4 bits (124), Expect = 2.840e-6
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   28 EEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPV 183
            +E + P L C + M +++EPV++ CGHTF ++ L +A+ G  ++C +CRAPV
Sbjct:  216 DESIPPHLECAICMKLLLEPVSVPCGHTFCQTCLEQAM-GYRNLCAVCRAPV 266          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: A0A6A5CAJ5_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CAJ5_NAEFO)

HSP 1 Score: 51.6 bits (122), Expect = 5.320e-6
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   16 DSDVEEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPVH 186
            D DVEE     L C L   +  EPVTLSCGHTF++S + R +   +  CPLCR  +H
Sbjct:  289 DEDVEE-----LECPLCYRVFYEPVTLSCGHTFDRSCICR-VHDYSDKCPLCRQTIH 339          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: UPI00145B6409 (E3 ubiquitin-protein ligase TRIM21-like n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145B6409)

HSP 1 Score: 50.8 bits (120), Expect = 9.900e-6
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1
Query:   46 ELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLC 171
            +L C + M + VEPVT SCGH+F +  L RAL   TS CPLC
Sbjct:   20 QLNCSICMEMFVEPVTTSCGHSFCRRCLDRALRLNTSACPLC 61          
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Match: UPI001CFCF708 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCF708)

HSP 1 Score: 50.4 bits (119), Expect = 1.360e-5
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   22 DVEEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGGTSVCPLCRAPVH 186
            D  E++  EL C L   +  EPVTLSCGHTF++S + R +   +  CPLCR  +H
Sbjct:  302 DFNEDI-EELECPLCYRVFYEPVTLSCGHTFDRSCICR-VHDYSDKCPLCRQTIH 354          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97530.22469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S1WYB5_ALECA1.220e-744.26Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A8J2B3Y6_9DINO5.910e-742.65Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A2I0AMS9_9ASPA8.190e-741.67RING-type E3 ubiquitin transferase n=1 Tax=Apostas... [more]
A0A6T1BC94_9DINO1.500e-647.06Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A8J1Z118_9DINO2.060e-647.06Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A812KBY1_9DINO2.790e-644.23LONRF3 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812WVL6_9DINO2.840e-642.31LONRF3 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A6A5CAJ5_NAEFO5.320e-647.37Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI00145B64099.900e-654.76E3 ubiquitin-protein ligase TRIM21-like n=1 Tax=Pe... [more]
UPI001CFCF7081.360e-545.45uncharacterized protein n=1 Tax=Naegleria lovanien... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97530contigM-pyrifera_M_contig97530:511..702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.5065517-CDS-M-pyrifera_M_contig97530:510..7021622816892.5065517-CDS-M-pyrifera_M_contig97530:510..702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97530 511..702 +
1692278240.173029-CDS-M-pyrifera_M_contig97530:510..7021692278240.173029-CDS-M-pyrifera_M_contig97530:510..702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97530 511..702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97530.22469.1prot_M-pyrifera_M_contig97530.22469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97530 511..702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97530.22469.1

>prot_M-pyrifera_M_contig97530.22469.1 ID=prot_M-pyrifera_M_contig97530.22469.1|Name=mRNA_M-pyrifera_M_contig97530.22469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MAAGDDSDVEEEVWPELVCGLTMGIMVEPVTLSCGHTFEKSALRRALLGG
TSVCPLCRAPVHSS
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mRNA from alignment at M-pyrifera_M_contig97530:511..702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97530.22469.1 ID=mRNA_M-pyrifera_M_contig97530.22469.1|Name=mRNA_M-pyrifera_M_contig97530.22469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig97530:511..702+ (Macrocystis pyrifera P11B4 male)
ATGGCAGCTGGCGATGATTCTGACGTGGAGGAGGAAGTGTGGCCAGAGTT GGTTTGTGGGCTGACGATGGGGATCATGGTTGAGCCTGTGACGCTTTCTT GTGGGCACACTTTCGAGAAATCTGCGCTGCGTCGCGCGTTATTGGGCGGG ACTTCTGTGTGTCCTCTGTGCCGCGCCCCTGTGCATTCTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97530:511..702+

>mRNA_M-pyrifera_M_contig97530.22469.1 ID=mRNA_M-pyrifera_M_contig97530.22469.1|Name=mRNA_M-pyrifera_M_contig97530.22469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig97530:511..702+ (Macrocystis pyrifera P11B4 male)
ATGGCAGCTGGCGATGATTCTGACGTGGAGGAGGAAGTGTGGCCAGAGTT
GGTTTGTGGGCTGACGATGGGGATCATGGTTGAGCCTGTGACGCTTTCTT
GTGGGCACACTTTCGAGAAATCTGCGCTGCGTCGCGCGTTATTGGGCGGG
ACTTCTGTGTGTCCTCTGTGCCGCGCCCCTGTGCATTCTTCTATGGCAGC
TGGCGATGATTCTGACGTGGAGGAGGAAGTGTGGCCAGAGTTGGTTTGTG
GGCTGACGATGGGGATCATGGTTGAGCCTGTGACGCTTTCTTGTGGGCAC
ACTTTCGAGAAATCTGCGCTGCGTCGCGCGTTATTGGGCGGGACTTCTGT
GTGTCCTCTGTGCCGCGCCCCTGTGCATTCTTCT
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