mRNA_M-pyrifera_M_contig97500.22457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97500.22457.1
Unique NamemRNA_M-pyrifera_M_contig97500.22457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: A0A7V9NRF9_9ACTN (Glycosyltransferase family 4 protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NRF9_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 2.760e-14
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   25 GFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLVLP 213
            GF   G +   + +S   LLPYRIASQSG VVLAQA+G+VP+  AVGGLPEQ+ DG  G +LP
Sbjct:  234 GFLDPGALRSTVEQSSATLLPYRIASQSGAVVLAQALGSVPVASAVGGLPEQISDGETGRLLP 296          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: A0A7C4TF15_9ACTN (Glyco_trans_4-like_N domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C4TF15_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 9.630e-13
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   19 LSGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLVLP 213
            L G+ P G ++ A++ ++V L PY  A+QSG VVLA  +G+VP+  AVGG+PEQ+  GVDG+++P
Sbjct:  232 LPGYLPPGALLGAVAATEVTLAPYAHATQSGAVVLAHVLGSVPVASAVGGIPEQIDGGVDGILVP 296          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: A0A848EHE6_9PROT (Glycosyltransferase family 4 protein n=3 Tax=Roseomonas TaxID=125216 RepID=A0A848EHE6_9PROT)

HSP 1 Score: 64.7 bits (156), Expect = 1.720e-10
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 MTNATTLSGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLV 207
            +   T   G+    ++V  ++ +D A+LPYR ASQSGVV +A A+G   IV  VGGL EQVRDG+DGLV
Sbjct:  246 LPGVTLRPGWLSEADLVGLLAAADAAVLPYREASQSGVVPVALALGVPAIVTPVGGLAEQVRDGLDGLV 314          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: A0A4D8RKW3_AZOBR (Glycosyltransferase n=5 Tax=Azospirillum TaxID=191 RepID=A0A4D8RKW3_AZOBR)

HSP 1 Score: 60.5 bits (145), Expect = 5.520e-9
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 MTNATTLSGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLV 207
            + N T  + + P  EI   M ++D+ +LPYR ASQSGV+ +AQ+ G   +V  VGGL EQV DG  GLV
Sbjct:  260 LPNITLDNRYIPENEIPAIMGKADLVVLPYREASQSGVIAMAQSCGVPVVVTPVGGLVEQVIDGETGLV 328          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: UPI001BAB02C4 (glycosyltransferase family 4 protein n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BAB02C4)

HSP 1 Score: 60.1 bits (144), Expect = 7.390e-9
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   22 SGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLV 207
            +G+ P  E+ + ++ +D  +LPYR ASQSGV  LA A G   +   VGGL EQ++DG+DGL+
Sbjct:  248 AGWLPEAEMARLVASADAVVLPYREASQSGVAPLAHAAGVPVVATPVGGLAEQLQDGIDGLL 309          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: UPI0018DFAF7A (glycosyltransferase family 4 protein n=1 Tax=Roseomonas sp. OP-27 TaxID=2748667 RepID=UPI0018DFAF7A)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-8
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 MTNATTLSGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLV 207
            +   T  S +    E+   ++E+D  +LPYR ASQSGV  LA  +G   +   VGGL EQVRDG+DG++
Sbjct:   63 LPGVTVESRWLGEAEMAALVAEADAVVLPYREASQSGVAPLAHGLGVPVVATPVGGLAEQVRDGIDGVL 131          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: UPI001E3CA6E5 (glycosyltransferase n=1 Tax=Roseomonas sp. CECT 9278 TaxID=2845823 RepID=UPI001E3CA6E5)

HSP 1 Score: 58.9 bits (141), Expect = 1.910e-8
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   43 EIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLVLPLD 219
            E+   ++ +   + PYR ASQSG+V LA ++G   +  AVGGL EQVRDGV GLV+P D
Sbjct:  254 EMAPLLASARAVVFPYRQASQSGIVPLALSLGVPAVATAVGGLVEQVRDGVSGLVVPPD 312          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: A0A7Y1ZRX7_9BACT (Glycosyltransferase n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y1ZRX7_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.930e-8
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    7 NATTLSGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLVLPLD 219
            + T ++ F P  E+      +D  +LPYR A+QSGVV +A       IV   GGLPE V+DG+ G V+P+D
Sbjct:  257 HVTIINRFVPDDEVATYFCAADTVVLPYRSATQSGVVQIAMHFDRACIVTDTGGLPEMVQDGITGFVVPVD 327          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: UPI0010C14CA1 (glycosyltransferase family 4 protein n=1 Tax=Roseomonas sp. HF4 TaxID=2562313 RepID=UPI0010C14CA1)

HSP 1 Score: 58.5 bits (140), Expect = 2.650e-8
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   43 EIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLV 207
            E+ Q ++ SD  +LPY  ASQSGV  +A AMG   +V  VGGL EQVRD +DGLV
Sbjct:  258 ELPQLIAASDAVVLPYTEASQSGVAPVAHAMGVPVVVTPVGGLVEQVRDDIDGLV 312          
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Match: A0A060BNW9_9CHLB (Glycos_transf_1 (Fragment) n=1 Tax=uncultured Chlorobium sp. TaxID=309171 RepID=A0A060BNW9_9CHLB)

HSP 1 Score: 56.2 bits (134), Expect = 2.760e-8
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   43 EIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPIVHAVGGLPEQVRDGVDGLV 207
            EI   +  +D  +LPYR ASQSGV  +A  +G   +   VGGL EQVRDGVDGL+
Sbjct:   26 EIAALIGGADAVVLPYREASQSGVAPVAHGLGVPVVATPVGGLSEQVRDGVDGLL 80          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97500.22457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9NRF9_9ACTN2.760e-1458.73Glycosyltransferase family 4 protein n=1 Tax=Actin... [more]
A0A7C4TF15_9ACTN9.630e-1349.23Glyco_trans_4-like_N domain-containing protein n=1... [more]
A0A848EHE6_9PROT1.720e-1050.72Glycosyltransferase family 4 protein n=3 Tax=Roseo... [more]
A0A4D8RKW3_AZOBR5.520e-947.83Glycosyltransferase n=5 Tax=Azospirillum TaxID=191... [more]
UPI001BAB02C47.390e-946.77glycosyltransferase family 4 protein n=1 Tax=Roseo... [more]
UPI0018DFAF7A1.200e-843.48glycosyltransferase family 4 protein n=1 Tax=Roseo... [more]
UPI001E3CA6E51.910e-850.85glycosyltransferase n=1 Tax=Roseomonas sp. CECT 92... [more]
A0A7Y1ZRX7_9BACT1.930e-842.25Glycosyltransferase n=1 Tax=Rhodothermales bacteri... [more]
UPI0010C14CA12.650e-856.36glycosyltransferase family 4 protein n=1 Tax=Roseo... [more]
A0A060BNW9_9CHLB2.760e-852.73Glycos_transf_1 (Fragment) n=1 Tax=uncultured Chlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97500contigM-pyrifera_M_contig97500:276..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.9791057-CDS-M-pyrifera_M_contig97500:275..4941622816891.9791057-CDS-M-pyrifera_M_contig97500:275..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97500 276..494 -
1692278239.8700159-CDS-M-pyrifera_M_contig97500:275..4941692278239.8700159-CDS-M-pyrifera_M_contig97500:275..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97500 276..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97500.22457.1prot_M-pyrifera_M_contig97500.22457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97500 276..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97500.22457.1

>prot_M-pyrifera_M_contig97500.22457.1 ID=prot_M-pyrifera_M_contig97500.22457.1|Name=mRNA_M-pyrifera_M_contig97500.22457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MTNATTLSGFRPAGEIVQAMSESDVALLPYRIASQSGVVVLAQAMGTVPI
VHAVGGLPEQVRDGVDGLVLPLD
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mRNA from alignment at M-pyrifera_M_contig97500:276..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97500.22457.1 ID=mRNA_M-pyrifera_M_contig97500.22457.1|Name=mRNA_M-pyrifera_M_contig97500.22457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig97500:276..494- (Macrocystis pyrifera P11B4 male)
ATGACGAACGCCACGACGCTGAGTGGCTTTCGCCCAGCTGGAGAGATCGT CCAGGCCATGTCGGAATCCGATGTTGCATTGTTGCCGTACCGAATCGCCA GCCAGAGCGGCGTCGTCGTCCTCGCTCAGGCGATGGGCACGGTGCCGATC GTCCACGCCGTCGGCGGTCTTCCGGAACAGGTACGCGACGGAGTCGACGG CCTGGTCCTGCCGTTGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97500:276..494-

>mRNA_M-pyrifera_M_contig97500.22457.1 ID=mRNA_M-pyrifera_M_contig97500.22457.1|Name=mRNA_M-pyrifera_M_contig97500.22457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig97500:276..494- (Macrocystis pyrifera P11B4 male)
ATGACGAACGCCACGACGCTGAGTGGCTTTCGCCCAGCTGGAGAGATCGT
CCAGGCCATGTCGGAATCCGATGTTGCATTGTTGCCGTACCGAATCGCCA
GCCAGAGCGGCGTCGTCGTCCTCGCTCAGGCGATGGGCACGGTGCCGATC
GTCCACGCCGTCGGCGGTCTTCCGGAACAGGTACGCGACGGAGTCGACGG
CCTGGTCCTGCCGTTGGATATGACGAACGCCACGACGCTGAGTGGCTTTC
GCCCAGCTGGAGAGATCGTCCAGGCCATGTCGGAATCCGATGTTGCATTG
TTGCCGTACCGAATCGCCAGCCAGAGCGGCGTCGTCGTCCTCGCTCAGGC
GATGGGCACGGTGCCGATCGTCCACGCCGTCGGCGGTCTTCCGGAACAGG
TACGCGACGGAGTCGACGGCCTGGTCCTGCCGTTGGAT
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