mRNA_M-pyrifera_M_contig975.22456.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig975.22456.1
Unique NamemRNA_M-pyrifera_M_contig975.22456.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig975.22456.1 vs. uniprot
Match: D7FGS9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGS9_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.840e-26
Identity = 111/248 (44.76%), Postives = 144/248 (58.06%), Query Frame = 1 
Query:    7 WWRRVQQAFVKPSSPSSLKKNASENLSFLQKKYGDLAKDK-GEDLRKSLKTSVSDYGKQAKSAPQDLKARSVELGRQARVRAEKATSGLGKQLGDSARALPSRTVEVATKAAQGAAAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXAMPKVGAYANETGRRIAYVILGTAFLYGLGSSLPGAVGRYYTEKDRRRGEEAKGRGGDASDGGDSLSSTRVEEARGVS----GGEPTLLGIGKVEQWVRDR 735
            WWR++QQ   KPSS   LKK A  NLSFL+KKYG++A  K  +D+R +++ +V                +S   G+ AR RAE ATS +GKQ  +SAR++PS+                  XXXXXXXXXXXXXXXXXXXXXXXXXX             RRI  ++LGTAFLYG+GS LPGAV RY+TEKDRRR EE + +   A       SS R  +  G +     G+ + L + ++E+W+R R
Sbjct:   26 WWRKIQQTLPKPSS---LKKTARGNLSFLEKKYGEVAAGKDAKDVRNAVRNTVK---------------KSASYGKSARDRAEDATSRVGKQFVESARSIPSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRIVLLLLGTAFLYGVGSGLPGAVARYFTEKDRRRYEEGRRKSLGADGESSPSSSARAMDLDGTAVVEAAGQISSLFVVEIERWLRKR 255
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig975.22456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGS9_ECTSI2.840e-2644.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig975contigM-pyrifera_M_contig975:15045..16840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001010.1
Exons2
Model size738
Cds size738
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.9318564-CDS-M-pyrifera_M_contig975:15044..154611622816891.9318564-CDS-M-pyrifera_M_contig975:15044..15461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig975 15045..15461 -
1692278239.8510997-CDS-M-pyrifera_M_contig975:15044..154611692278239.8510997-CDS-M-pyrifera_M_contig975:15044..15461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig975 15045..15461 -
1622816891.9438035-CDS-M-pyrifera_M_contig975:16519..168401622816891.9438035-CDS-M-pyrifera_M_contig975:16519..16840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig975 16520..16840 -
1692278239.8598118-CDS-M-pyrifera_M_contig975:16519..168401692278239.8598118-CDS-M-pyrifera_M_contig975:16519..16840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig975 16520..16840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig975.22456.1prot_M-pyrifera_M_contig975.22456.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig975 15045..16840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig975.22456.1

>prot_M-pyrifera_M_contig975.22456.1 ID=prot_M-pyrifera_M_contig975.22456.1|Name=mRNA_M-pyrifera_M_contig975.22456.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
MSWWRRVQQAFVKPSSPSSLKKNASENLSFLQKKYGDLAKDKGEDLRKSL
KTSVSDYGKQAKSAPQDLKARSVELGRQARVRAEKATSGLGKQLGDSARA
LPSRTVEVATKAAQGAAAAGAEAAQSAASAGVKAATDAGRRATSKARDAM
PKVGAYANETGRRIAYVILGTAFLYGLGSSLPGAVGRYYTEKDRRRGEEA
KGRGGDASDGGDSLSSTRVEEARGVSGGEPTLLGIGKVEQWVRDR*
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mRNA from alignment at M-pyrifera_M_contig975:15045..16840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig975.22456.1 ID=mRNA_M-pyrifera_M_contig975.22456.1|Name=mRNA_M-pyrifera_M_contig975.22456.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1796bp|location=Sequence derived from alignment at M-pyrifera_M_contig975:15045..16840- (Macrocystis pyrifera P11B4 male)
ATGTCGTGGTGGCGCAGAGTCCAGCAAGCTTTCGTTAAGCCAAGCTCGCC
AAGCTCTCTCAAGAAAAACGCGAGCGAAAACCTGTCCTTCCTTCAAAAGA
AGTACGGCGACCTCGCCAAGGACAAAGGGGAGGACTTGAGAAAATCTTTG
AAGACAAGCGTCAGCGACTACGGGAAGCAAGCGAAAAGTGCCCCCCAGGA
TCTGAAGGCGCGGAGCGTGGAGCTCGGAAGGCAGGCACGGGTGCGCGCCG
AGAAAGCAACGTCAGGCCTGGGCAAGCAGCTGGGCGATAGCGCGAGAGCT
TTACCGTCGAGGACTGTCGAGGTTTGTTGCTCGCCTTGGTACCTTTTATG
CTCCCCGCGAGGCACTCGGGCTACCTCCTGCTGCACGGATGTGGGCTTCA
AATCGAGTCCTTGTCACGTTCAGAGCTGTAACACACTCGACCAAAAAGTG
TGCACCTCAATAGAGCTACCTCGTTTAGTCAAGCACAGCATAGATCCTCT
CTCCAGAGTCCAGAGTGTGAGTATAACAAGTAATAAATGCACTCGTCGTC
GTAGAACATCGTAGAATATCGTCGTAAAGCATCGTCGTTCGTCGTAGACC
ACTGCTGTCGTTGGCGTTTTCGAATTTGGGTGCGATGTCAACCATATCCT
GACTATTCGGGGCTGCGGAGTTCAGAGCTTTGCTCCTTCAGGCTCGAGGC
CAGCCCAACGGCTGCTTGCTCGTAACTGCTGATTATGCTTGCTGCATGCG
AGGGCGCTCTAACTCGCCAACCAATCACTGGCTGGCATCGTCACGTCAAT
CGACGATATACCGGCCTTGTCGGTGTTTTGTTGTTTGTGTGCCTGGTATG
ATAAGCAGTTGAGCAACCAACGCTGTCCTGTCCAGTATACTTGTAGTGCT
GTACGAGAAGCACATGCCACTGTGTCCGGAAAAGTAAGGGCCGTTTGCGC
AATGATATTGGTACAAAACGTTTCTTAATTTTTCGGACATGTCTGTCGTT
TCTCACCATGACGCTGGCGCGATACAATTGTCTACCCCGTACAATACCCG
CTGGGCTGAGAACGTCGTCACCAGCTTTCTCGCACTGCTGTACGATACAC
CTGTACTGCTACACAAGGTACAAGCAGGGCTTCCTAGAGCTACAAGAGGC
AGACAACAAATAGTTGCGGCCCGAAACTGGCTCTACTGATTTTAGGTATA
ACTCGGGCTCCAGCTTGCGCAAAGCTGGTGGCGCTGTTACGCTCCATATA
TACGGAACTTATAGTCTATCCACCCGAACTTGTGAAGTAGTAGGCCTTAA
ACCATTCCAAATATCAACCTCGACAACACCTGCCGCCGCCGCCCCCACCC
CGACCCCCGACGATCGGACGCCGTCGAAGGTGGCGACGAAAGCTGCACAA
GGAGCTGCGGCAGCCGGGGCCGAGGCGGCACAAAGCGCGGCCTCGGCAGG
GGTGAAGGCGGCCACGGATGCTGGTCGACGGGCCACGAGCAAGGCGCGGG
ATGCCATGCCTAAGGTCGGAGCGTACGCGAACGAGACCGGCCGACGCATA
GCGTACGTGATTTTAGGAACGGCTTTTTTGTACGGCCTTGGGTCATCACT
GCCTGGGGCCGTGGGGCGTTACTACACCGAGAAGGATCGCAGGCGAGGCG
AAGAGGCGAAAGGGAGGGGGGGCGATGCGAGCGATGGTGGCGATTCGTTG
TCGTCAACCCGGGTAGAGGAGGCGAGAGGGGTATCGGGGGGGGAGCCGAC
ACTGCTCGGGATTGGGAAGGTCGAACAATGGGTGCGAGATCGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig975:15045..16840-

>mRNA_M-pyrifera_M_contig975.22456.1 ID=mRNA_M-pyrifera_M_contig975.22456.1|Name=mRNA_M-pyrifera_M_contig975.22456.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig975:15045..16840- (Macrocystis pyrifera P11B4 male)
ATGTCGTGGTGGCGCAGAGTCCAGCAAGCTTTCGTTAAGCCAAGCTCGCC
AAGCTCTCTCAAGAAAAACGCGAGCGAAAACCTGTCCTTCCTTCAAAAGA
AGTACGGCGACCTCGCCAAGGACAAAGGGGAGGACTTGAGAAAATCTTTG
AAGACAAGCGTCAGCGACTACGGGAAGCAAGCGAAAAGTGCCCCCCAGGA
TCTGAAGGCGCGGAGCGTGGAGCTCGGAAGGCAGGCACGGGTGCGCGCCG
AGAAAGCAACGTCAGGCCTGGGCAAGCAGCTGGGCGATAGCGCGAGAGCT
TTACCGTCGAGGACTGTCGAGATGTCGTGGTGGCGCAGAGTCCAGCAAGC
TTTCGTTAAGCCAAGCTCGCCAAGCTCTCTCAAGAAAAACGCGAGCGAAA
ACCTGTCCTTCCTTCAAAAGAAGTACGGCGACCTCGCCAAGGACAAAGGG
GAGGACTTGAGAAAATCTTTGAAGACAAGCGTCAGCGACTACGGGAAGCA
AGCGAAAAGTGCCCCCCAGGATCTGAAGGCGCGGAGCGTGGAGCTCGGAA
GGCAGGCACGGGTGCGCGCCGAGAAAGCAACGTCAGGCCTGGGCAAGCAG
CTGGGCGATAGCGCGAGAGCTTTACCGTCGAGGACTGTCGAGGTGGCGAC
GAAAGCTGCACAAGGAGCTGCGGCAGCCGGGGCCGAGGCGGCACAAAGCG
CGGCCTCGGCAGGGGTGAAGGCGGCCACGGATGCTGGTCGACGGGCCACG
AGCAAGGCGCGGGATGCCATGCCTAAGGTCGGAGCGTACGCGAACGAGAC
CGGCCGACGCATAGCGTACGTGATTTTAGGAACGGCTTTTTTGTACGGCC
TTGGGTCATCACTGCCTGGGGCCGTGGGGCGTTACTACACCGAGAAGGAT
CGCAGGCGAGGCGAAGAGGCGAAAGGGAGGGGGGGCGATGCGAGCGATGG
TGGCGATTCGTTGTCGTCAACCCGGGTAGAGGAGGCGAGAGGGGTATCGG
GGGGGGAGCCGACACTGCTCGGGATTGGGAAGGTCGAACAATGGGTGCGA
GATCGATGAGTGGCGACGAAAGCTGCACAAGGAGCTGCGGCAGCCGGGGC
CGAGGCGGCACAAAGCGCGGCCTCGGCAGGGGTGAAGGCGGCCACGGATG
CTGGTCGACGGGCCACGAGCAAGGCGCGGGATGCCATGCCTAAGGTCGGA
GCGTACGCGAACGAGACCGGCCGACGCATAGCGTACGTGATTTTAGGAAC
GGCTTTTTTGTACGGCCTTGGGTCATCACTGCCTGGGGCCGTGGGGCGTT
ACTACACCGAGAAGGATCGCAGGCGAGGCGAAGAGGCGAAAGGGAGGGGG
GGCGATGCGAGCGATGGTGGCGATTCGTTGTCGTCAACCCGGGTAGAGGA
GGCGAGAGGGGTATCGGGGGGGGAGCCGACACTGCTCGGGATTGGGAAGG
TCGAACAATGGGTGCGAGATCGATGA
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