mRNA_M-pyrifera_M_contig100091.22.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100091.22.1
Unique NamemRNA_M-pyrifera_M_contig100091.22.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A2D6U7P6_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U7P6_9ACTN)

HSP 1 Score: 66.2 bits (160), Expect = 3.940e-10
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  181 PAELTSSFRGVTPEVIKVGITAVDWDTLAEIGVD-LGRSNALELWEAALDDINARGGIHGRMLEI 372
            P  LT+S+RGVT + I VG++ +D++ L E+G    G  +   +WEA +DD+NARGGI+GRM++I
Sbjct:   75 PVALTASWRGVTEDTIYVGVSLLDFELLVELGFSPSGWGDQAAVWEALVDDLNARGGINGRMVDI 139          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A7K1ZBK8_9ACTN (ABC transporter substrate-binding protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZBK8_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-9
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1
Query:  190 LTSSFRGVTPEVIKVGITAVDWDTLAEIGVDLGRSNALELWEAA-LDDINARGGIHGRMLEIHGTEF 387
            LTSS+ GVTPE IKVG+  +D+  L E GVD+      E+W  A +D  N RGG HGRM+E+    F
Sbjct:   87 LTSSWTGVTPETIKVGVAGIDFTRLQEFGVDI-EGIVAEIWAPAWVDAFNRRGGAHGRMMEVVVRNF 152          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A2E6UMG5_9ACTN (Peripla_BP_6 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6UMG5_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-8
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  190 LTSSFRGVTPEVIKVGITAVDWDTL-AEIGVDLGRSNALELWEAALDDINARGGIHGRMLEIHGTEF 387
            LT SFRGVT + IKVG+TA+D++ L  + G+ L  +N    +EA + D+NARGGI GR +E+    F
Sbjct:  111 LTDSFRGVTADTIKVGLTAIDFEGLNRDFGLTLTYANYQPFFEALVADLNARGGILGRQVEMVTRNF 177          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A381N747_9ZZZZ (Peripla_BP_6 domain-containing protein (Fragment) n=3 Tax=root TaxID=1 RepID=A0A381N747_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 1.020e-7
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  190 LTSSFRGVTPEVIKVGITAVDWDTL-AEIGVDLGRSNALELWEAALDDINARGGIHGRMLEI 372
            LT SFRGVT E I+VG+TA++++ L  + G+ L  +N    +EA + D+N RGGIHGR + +
Sbjct:   43 LTDSFRGVTAEAIEVGLTAINFEGLNRDFGLSLTYANYRPFFEALVADLNERGGIHGRRVNL 104          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A0C1UV49_9ACTN (Uncharacterized protein n=7 Tax=root TaxID=1 RepID=A0A0C1UV49_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 4.850e-7
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  190 LTSSFRGVTPEVIKVGITAVDWDTLAEI--GVDLGRSNALELWEAALDDINARGGIHGRMLEI 372
            LT SFRGVT E IKVG T++D++   E   G++L  +N   + +  ++D+NARGGI GR +EI
Sbjct:   52 LTDSFRGVTAETIKVGFTSIDFELFNEQFPGLNLTYANYPPMVDVLVEDLNARGGILGRKVEI 114          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A6L7SH27_9ACTN (Amino acid ABC transporter substrate-binding protein n=6 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7SH27_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 4.890e-7
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  181 PAELTSSFRGVTPEVIKVGITAVDWDTLAEIGVDLGRSNALELWEAALDDINARGGIHGRML 366
            P  LT+SFRGVT   I++GIT++D    +  G D G   A   W+ A+D +NA+GGIHGRML
Sbjct:   84 PVPLTASFRGVTETEIRIGITSLD---ASMFGFDQGDLAAK--WQVAVDAVNAKGGIHGRML 140          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A2E5P224_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5P224_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 4.950e-7
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  190 LTSSFRGVTPEVIKVGITAVDWDTLAEI-GVDLGRSNALELWEAALDDINARGGIHGRMLEIHGTEF 387
            L  +FRGVT E IK+G+T +D+++L +I  + L   N + ++EA + DIN+RGG+ GR +++    F
Sbjct:  110 LEDTFRGVTSEAIKIGLTVIDFESLNQIFDLSLTYDNWIPVFEAMVADINSRGGVLGRRVDLVSRSF 176          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A432JUX6_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A432JUX6_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.640e-6
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query:  178 APAELTSSFRGVTPEVIKVGITAVDWDTLAE-IGVDLGRSNALELWEAALDDINARGGIHGRMLEIHGTEF 387
            AP  LT SFRGVT E I VG  A+D+D L    G+DL  +N   + E  + D+N RGGI GR +E+    F
Sbjct:   13 APIILTDSFRGVTAEAILVGWPAIDFDDLNRTFGLDLHYANYGPVIEIVVADLNGRGGILGRRVEVTVRPF 83          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A3M2FXY8_ACTSX (Peripla_BP_6 domain-containing protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2FXY8_ACTSX)

HSP 1 Score: 55.8 bits (133), Expect = 1.690e-6
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  181 PAELTSSFRGVTPEVIKVGITAVDWDTLAEIGVD-LGRSNALELWEAALDDINARGGIHGRMLE 369
            P ELT+S+RGVT + I+VGI+ +D+  L +  +   G  +   +W+  +DD+NARGGI GR +E
Sbjct:   66 PVELTASWRGVTEDTIRVGISMLDFKFLVDNNLSPSGWGDQQLVWQTFIDDLNARGGILGRSVE 129          
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Match: A0A6B1GZK3_9ACTN (Uncharacterized protein n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1GZK3_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 7.960e-6
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  181 PAELTSSFRGVTPEVIKVGITAVDWDTLAEIGVDLGRSNALELWEAALDDINARGGIHGRML 366
            P  LT+SFRGVT   I++G+T++D +     G D G  +    W+ A+D +NA+GGI+GRML
Sbjct:   92 PVPLTASFRGVTETEIRIGMTSLDAEMF---GFDQG--DLASKWQVAVDAVNAKGGINGRML 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100091.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2D6U7P6_9ACTN3.940e-1047.69Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]
A0A7K1ZBK8_9ACTN1.360e-949.25ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A2E6UMG5_9ACTN1.640e-847.76Peripla_BP_6 domain-containing protein n=2 Tax=Aci... [more]
A0A381N747_9ZZZZ1.020e-746.77Peripla_BP_6 domain-containing protein (Fragment) ... [more]
A0A0C1UV49_9ACTN4.850e-747.62Uncharacterized protein n=7 Tax=root TaxID=1 RepID... [more]
A0A6L7SH27_9ACTN4.890e-750.00Amino acid ABC transporter substrate-binding prote... [more]
A0A2E5P224_9ACTN4.950e-740.30Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A432JUX6_9ACTN1.640e-646.48Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A3M2FXY8_ACTSX1.690e-643.75Peripla_BP_6 domain-containing protein n=1 Tax=Act... [more]
A0A6B1GZK3_9ACTN7.960e-645.16Uncharacterized protein n=4 Tax=Acidimicrobiia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100091contigM-pyrifera_M_contig100091:1..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.5881069-CDS-M-pyrifera_M_contig100091:0..3871622815495.5881069-CDS-M-pyrifera_M_contig100091:0..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100091 1..387 -
1692277437.8521101-CDS-M-pyrifera_M_contig100091:0..3871692277437.8521101-CDS-M-pyrifera_M_contig100091:0..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100091 1..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100091.22.1prot_M-pyrifera_M_contig100091.22.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100091 1..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100091.22.1

>prot_M-pyrifera_M_contig100091.22.1 ID=prot_M-pyrifera_M_contig100091.22.1|Name=mRNA_M-pyrifera_M_contig100091.22.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
ALALALALFGASCSGSDSAPSDAGAAAREVDETNDSSAPEDSPASEGQGA
TPDADAGVVAPAELTSSFRGVTPEVIKVGITAVDWDTLAEIGVDLGRSNA
LELWEAALDDINARGGIHGRMLEIHGTEF
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mRNA from alignment at M-pyrifera_M_contig100091:1..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100091.22.1 ID=mRNA_M-pyrifera_M_contig100091.22.1|Name=mRNA_M-pyrifera_M_contig100091.22.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig100091:1..387- (Macrocystis pyrifera P11B4 male)
GCCCTCGCCCTCGCGTTGGCACTCTTCGGCGCATCCTGCAGCGGGTCCGA CTCGGCGCCGTCCGACGCCGGCGCAGCCGCTCGCGAGGTCGATGAGACCA ACGACTCGTCCGCACCCGAAGACTCGCCCGCCTCCGAGGGCCAGGGCGCG ACGCCCGACGCCGACGCCGGCGTCGTAGCGCCGGCCGAACTCACCTCATC GTTTCGCGGGGTGACCCCAGAGGTCATCAAGGTCGGGATCACCGCCGTCG ACTGGGACACCCTCGCCGAGATCGGTGTCGACCTCGGACGCTCGAACGCA CTCGAGCTCTGGGAAGCGGCGCTCGACGACATCAACGCCCGTGGCGGCAT CCACGGCCGGATGCTCGAGATCCACGGCACCGAGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100091:1..387-

>mRNA_M-pyrifera_M_contig100091.22.1 ID=mRNA_M-pyrifera_M_contig100091.22.1|Name=mRNA_M-pyrifera_M_contig100091.22.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig100091:1..387- (Macrocystis pyrifera P11B4 male)
GCCCTCGCCCTCGCGTTGGCACTCTTCGGCGCATCCTGCAGCGGGTCCGA
CTCGGCGCCGTCCGACGCCGGCGCAGCCGCTCGCGAGGTCGATGAGACCA
ACGACTCGTCCGCACCCGAAGACTCGCCCGCCTCCGAGGGCCAGGGCGCG
ACGCCCGACGCCGACGCCGGCGTCGTAGCGCCGGCCGAACTCACCTCATC
GTTTCGCGGGGTGACCCCAGAGGTCATCAAGGTCGGGATCACCGCCGTCG
ACTGGGACACCCTCGCCGAGATCGGTGTCGACCTCGGACGCTCGAACGCA
CTCGAGCTCTGGGAAGCGGCGCTCGACGACATCAACGCCCGTGGCGGCAT
CCACGGCCGGATGCTCGAGATCCACGGCACCGAGTTCGCCCTCGCCCTCG
CGTTGGCACTCTTCGGCGCATCCTGCAGCGGGTCCGACTCGGCGCCGTCC
GACGCCGGCGCAGCCGCTCGCGAGGTCGATGAGACCAACGACTCGTCCGC
ACCCGAAGACTCGCCCGCCTCCGAGGGCCAGGGCGCGACGCCCGACGCCG
ACGCCGGCGTCGTAGCGCCGGCCGAACTCACCTCATCGTTTCGCGGGGTG
ACCCCAGAGGTCATCAAGGTCGGGATCACCGCCGTCGACTGGGACACCCT
CGCCGAGATCGGTGTCGACCTCGGACGCTCGAACGCACTCGAGCTCTGGG
AAGCGGCGCTCGACGACATCAACGCCCGTGGCGGCATCCACGGCCGGATG
CTCGAGATCCACGGCACCGAGTTC
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