prot_M-pyrifera_M_contig110249.2150.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110249.2150.1
Unique Nameprot_M-pyrifera_M_contig110249.2150.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length94
Homology
BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Match: A0A0K9QDS7_SPIOL (HMG box domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QDS7_SPIOL)

HSP 1 Score: 54.7 bits (130), Expect = 7.020e-7
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0
Query:    4 TAGGVQVGRKRSAKRARLPGEPKRPPSGYQLFMKEFR----EKRQGSGTPQEIMREVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEFQATHD 94
            +A G    +KR   + + P  PKRP SGY LF+++FR    E+   S   +E+ +E  A W+ ++ EEK+PY+D+   L  +Y+   E + A +D
Sbjct:   98 SAAGESKSKKRKLSKVKDPNMPKRPMSGYFLFLEDFRKVYKEEHPDSKGVKEVAKEAGAKWKSMTDEEKKPYQDKYAELKVEYEKAMEAYNANND 192          
BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Match: T1IWX7_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IWX7_STRMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.420e-6
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 0
Query:   21 LPGEPKRPPSGYQLFMKEFREKRQGSGTPQEIMREVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEFQATHD 94
            L G+PKRPP  + LF+KE      G+ +P+EI+ +    W+  + EEK+PY ++ K+LS+KYKA+ + +    D
Sbjct:  162 LMGKPKRPPHSFNLFLKE--RLTLGTESPKEILIKAGKEWKTKTEEEKRPYVEKAKILSKKYKAESQAWLEKRD 233          
BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Match: UPI001BB22CF4 (transcription factor A, mitochondrial-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB22CF4)

HSP 1 Score: 50.1 bits (118), Expect = 4.380e-5
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 0
Query:    8 VQVGRKRSAKRARLP--------GEPKRPPSGYQLFMK-EFREKRQGSGTPQEIM---REVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEF 89
             ++GRK+   RA+           +PK+PP+GY LF++  F ++  G  T +E+    RE A+ WR L  +EKQ Y ++  LL+  Y+ + +E+
Sbjct:  134 TEIGRKKREMRAKRRHKMEMKKLNKPKKPPTGYSLFIRAHFNQQMVGGRTREEVQAQFREAASIWRSLPEDEKQQYNEEASLLTETYREEMDEW 227          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QDS7_SPIOL7.020e-734.74HMG box domain-containing protein n=1 Tax=Spinacia... [more]
T1IWX7_STRMM1.420e-639.19Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
UPI001BB22CF44.380e-532.98transcription factor A, mitochondrial-like n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 24..91
e-value: 5.1E-13
score: 59.2
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 25..89
e-value: 1.9E-12
score: 47.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 25..90
score: 14.295
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 9..94
e-value: 2.4E-21
score: 77.9
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 13..93
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 10..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110249contigM-pyrifera_M_contig110249:256..537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110249.2150.1mRNA_M-pyrifera_M_contig110249.2150.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110249 256..537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110249.2150.1 ID=prot_M-pyrifera_M_contig110249.2150.1|Name=mRNA_M-pyrifera_M_contig110249.2150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
LPKTAGGVQVGRKRSAKRARLPGEPKRPPSGYQLFMKEFREKRQGSGTPQ
EIMREVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEFQATHD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf