mRNA_M-pyrifera_M_contig110249.2150.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110249.2150.1
Unique NamemRNA_M-pyrifera_M_contig110249.2150.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Match: A0A0K9QDS7_SPIOL (HMG box domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QDS7_SPIOL)

HSP 1 Score: 54.7 bits (130), Expect = 7.020e-7
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   10 TAGGVQVGRKRSAKRARLPGEPKRPPSGYQLFMKEFR----EKRQGSGTPQEIMREVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEFQATHD 282
            +A G    +KR   + + P  PKRP SGY LF+++FR    E+   S   +E+ +E  A W+ ++ EEK+PY+D+   L  +Y+   E + A +D
Sbjct:   98 SAAGESKSKKRKLSKVKDPNMPKRPMSGYFLFLEDFRKVYKEEHPDSKGVKEVAKEAGAKWKSMTDEEKKPYQDKYAELKVEYEKAMEAYNANND 192
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BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Match: T1IWX7_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IWX7_STRMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.420e-6
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   61 LPGEPKRPPSGYQLFMKEFREKRQGSGTPQEIMREVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEFQATHD 282
            L G+PKRPP  + LF+KE      G+ +P+EI+ +    W+  + EEK+PY ++ K+LS+KYKA+ + +    D
Sbjct:  162 LMGKPKRPPHSFNLFLKE--RLTLGTESPKEILIKAGKEWKTKTEEEKRPYVEKAKILSKKYKAESQAWLEKRD 233
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BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Match: UPI001BB22CF4 (transcription factor A, mitochondrial-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB22CF4)

HSP 1 Score: 50.1 bits (118), Expect = 4.380e-5
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   22 VQVGRKRSAKRARLP--------GEPKRPPSGYQLFMK-EFREKRQGSGTPQEIM---REVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEF 267
             ++GRK+   RA+           +PK+PP+GY LF++  F ++  G  T +E+    RE A+ WR L  +EKQ Y ++  LL+  Y+ + +E+
Sbjct:  134 TEIGRKKREMRAKRRHKMEMKKLNKPKKPPTGYSLFIRAHFNQQMVGGRTREEVQAQFREAASIWRSLPEDEKQQYNEEASLLTETYREEMDEW 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110249.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QDS7_SPIOL7.020e-734.74HMG box domain-containing protein n=1 Tax=Spinacia... [more]
T1IWX7_STRMM1.420e-639.19Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
UPI001BB22CF44.380e-532.98transcription factor A, mitochondrial-like n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110249contigM-pyrifera_M_contig110249:256..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.8706567-CDS-M-pyrifera_M_contig110249:255..5371622815613.8706567-CDS-M-pyrifera_M_contig110249:255..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110249 256..537 +
1692277487.9141219-CDS-M-pyrifera_M_contig110249:255..5371692277487.9141219-CDS-M-pyrifera_M_contig110249:255..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110249 256..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110249.2150.1prot_M-pyrifera_M_contig110249.2150.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110249 256..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110249.2150.1

>prot_M-pyrifera_M_contig110249.2150.1 ID=prot_M-pyrifera_M_contig110249.2150.1|Name=mRNA_M-pyrifera_M_contig110249.2150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
LPKTAGGVQVGRKRSAKRARLPGEPKRPPSGYQLFMKEFREKRQGSGTPQ
EIMREVAAAWRELSPEEKQPYKDQGKLLSRKYKADKEEFQATHD
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mRNA from alignment at M-pyrifera_M_contig110249:256..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110249.2150.1 ID=mRNA_M-pyrifera_M_contig110249.2150.1|Name=mRNA_M-pyrifera_M_contig110249.2150.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig110249:256..537+ (Macrocystis pyrifera P11B4 male)
TTACCGAAAACAGCAGGGGGTGTGCAAGTGGGACGCAAGCGGTCTGCAAA
GCGTGCAAGATTGCCCGGAGAACCGAAACGTCCTCCAAGTGGCTACCAGC
TCTTTATGAAAGAGTTTCGTGAGAAGCGGCAAGGTTCTGGTACGCCACAG
GAGATTATGCGAGAAGTTGCAGCGGCATGGAGAGAGCTGAGCCCCGAAGA
AAAGCAGCCTTACAAAGATCAAGGCAAACTCTTGTCTCGCAAGTACAAGG
CTGACAAGGAAGAGTTCCAAGCCACCCACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110249:256..537+

>mRNA_M-pyrifera_M_contig110249.2150.1 ID=mRNA_M-pyrifera_M_contig110249.2150.1|Name=mRNA_M-pyrifera_M_contig110249.2150.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig110249:256..537+ (Macrocystis pyrifera P11B4 male)
TTACCGAAAACAGCAGGGGGTGTGCAAGTGGGACGCAAGCGGTCTGCAAA
GCGTGCAAGATTGCCCGGAGAACCGAAACGTCCTCCAAGTGGCTACCAGC
TCTTTATGAAAGAGTTTCGTGAGAAGCGGCAAGGTTCTGGTACGCCACAG
GAGATTATGCGAGAAGTTGCAGCGGCATGGAGAGAGCTGAGCCCCGAAGA
AAAGCAGCCTTACAAAGATCAAGGCAAACTCTTGTCTCGCAAGTACAAGG
CTGACAAGGAAGAGTTCCAAGCCACCCACGACTTACCGAAAACAGCAGGG
GGTGTGCAAGTGGGACGCAAGCGGTCTGCAAAGCGTGCAAGATTGCCCGG
AGAACCGAAACGTCCTCCAAGTGGCTACCAGCTCTTTATGAAAGAGTTTC
GTGAGAAGCGGCAAGGTTCTGGTACGCCACAGGAGATTATGCGAGAAGTT
GCAGCGGCATGGAGAGAGCTGAGCCCCGAAGAAAAGCAGCCTTACAAAGA
TCAAGGCAAACTCTTGTCTCGCAAGTACAAGGCTGACAAGGAAGAGTTCC
AAGCCACCCACGAC
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