mRNA_M-pyrifera_M_contig90842.21057.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90842.21057.1
Unique NamemRNA_M-pyrifera_M_contig90842.21057.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90842.21057.1 vs. uniprot
Match: F0W5X9_9STRA (Importinlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5X9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.620e-18
Identity = 59/196 (30.10%), Postives = 99/196 (50.51%), Query Frame = 1 
Query:   16 PSLFRDCVDDAADVALSLAESEDWMPETRLAALELLVSLASFGGAVARRSSVLAERAVPAAVGLFAGVVDDDENTEEALLEWGRARNDEHSLTMEPSDDDPL-EDGGITALSRLSHALGGASVMDRLVPLLGELVEDDRWERRRAAAIALTAIGAGARKEILREVRGVSESVWRPLLRDAHPRVRNVTAASIAQVA 600
            P  F+  ++   +  L +  S++  PETR  ALEL+V++        R+SS   +  +P  + L   V DD E        W + + D   + ME  DD+ +  + G  A++RLS ALGG S++  ++P++   + D  W +RRAA  A   +G G++ ++  ++  V   +  P L D HPRV+      I Q+A
Sbjct:  241 PKFFKSALEQLGNAMLVIMTSQEMSPETRDLALELVVTICENASGTVRKSSQFIQMLLPTTLQLICEVEDDPE--------W-KLKFDSPDMYMESHDDENIVSEAGANAITRLSIALGGKSILPVVIPVIRSYLADQDWRKRRAALYATCLLGEGSKAQLESQLASVVGMIM-PYLEDGHPRVQYSAIYCIGQLA 426
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BLAST of mRNA_M-pyrifera_M_contig90842.21057.1 vs. uniprot
Match: A0A5A8EEB9_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EEB9_CAFRO)

HSP 1 Score: 77.4 bits (189), Expect = 6.790e-13
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:   97 TRLAALELLVSLASFGGAVARRSSVLAERAVPAAVGLFAGVVDDDENTEEALLEWGRARNDEHSLTMEPSDDD-PLEDGGITALSRLSHALGGASVMDRLVPLLGELVEDDRWERRRAAAIALTAIGAGARKEILREVRGVSESVWRPLLRDAHPRVRNVTAASIAQV 597
            TR+AALEL V+L  F G + R+ S + + A+ A V      VDDD         WG     + S + +  DD+ P+       L RLS ALGG  ++ R++ ++G   E   W RRRAA + +  +G G++K +   +  ++  V R    D HPRVR      +AQ+
Sbjct: 2266 TRVAALELAVTLCEFAGGMLRKHSAVVD-ALVAEVCERVTEVDDDAT-------WGSRPTHKTSFSHDEDDDENPVVGFSGQVLDRLSSALGGVQMVPRVLGVIGSWFEHAEWRRRRAACLIIGLVGEGSKKALSPRIDDIARGVARRFA-DPHPRVRFAALVGMAQL 2424
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BLAST of mRNA_M-pyrifera_M_contig90842.21057.1 vs. uniprot
Match: A0A6G0X6P6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6P6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.030e-8
Identity = 52/197 (26.40%), Postives = 91/197 (46.19%), Query Frame = 1 
Query:   16 PSLFRDCVDDAADVALSLAESEDWMPETRLAALELLVSLASFGGAVARRSSVLAERAVPAAVGLFAGVVDDDENTEEALLEWGRARNDEHSLTMEPSDDDPLEDGGITALSRLSHALGGASVMDRLVPLLGELVEDDR-WERRRAAAIALTAIGAGARKEILREVRGVSESVWRPLLRDAHPRVRNVTAASIAQVAE 603
            P+L    +D      LS+A+S     +TR+ ALE L+S+      + R S VL E  V   + L A + DDD         W    +D+   T        + D G  A+ R++H++GG  ++  ++P L + +++   W++R AA  A+  +  GA++ +  E+      +   L     PRVR+     I  +A+
Sbjct:  239 PNLLLLHLDMFGSAMLSIAQSSVLGNDTRILALECLLSICEHASQLVRSSKVLLEAVVSCVLVLLAEIPDDDN--------WVNQFDDQKDDTGVR-----MTDAGAAAIDRVAHSIGGKVLLPLVLPWLTQYMDEKASWQQRHAALYAIGLMAEGAKEYLYNELDNWFPRIVASLHDPVFPRVRHAALFCIGHLAK 422
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90842.21057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F0W5X9_9STRA5.620e-1830.10Importinlike protein putative n=1 Tax=Albugo laiba... [more]
A0A5A8EEB9_CAFRO6.790e-1333.33Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A6G0X6P6_9STRA1.030e-826.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90842contigM-pyrifera_M_contig90842:17..646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog272952.HpaP800094
KEGG koko:K20222
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGs3Q7JP@4776,KOG2171@1,KOG2171@2759
COG Functional cat.UY
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.5900688-CDS-M-pyrifera_M_contig90842:16..6461622816820.5900688-CDS-M-pyrifera_M_contig90842:16..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90842 17..646 +
1692278197.8405833-CDS-M-pyrifera_M_contig90842:16..6461692278197.8405833-CDS-M-pyrifera_M_contig90842:16..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90842 17..646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90842.21057.1prot_M-pyrifera_M_contig90842.21057.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90842 17..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90842.21057.1

>prot_M-pyrifera_M_contig90842.21057.1 ID=prot_M-pyrifera_M_contig90842.21057.1|Name=mRNA_M-pyrifera_M_contig90842.21057.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
LATNVPSLFRDCVDDAADVALSLAESEDWMPETRLAALELLVSLASFGGA
VARRSSVLAERAVPAAVGLFAGVVDDDENTEEALLEWGRARNDEHSLTME
PSDDDPLEDGGITALSRLSHALGGASVMDRLVPLLGELVEDDRWERRRAA
AIALTAIGAGARKEILREVRGVSESVWRPLLRDAHPRVRNVTAASIAQVA
EVLLPSRTDK
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mRNA from alignment at M-pyrifera_M_contig90842:17..646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90842.21057.1 ID=mRNA_M-pyrifera_M_contig90842.21057.1|Name=mRNA_M-pyrifera_M_contig90842.21057.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig90842:17..646+ (Macrocystis pyrifera P11B4 male)
CTAGCAACGAATGTGCCTTCGTTATTTCGAGATTGTGTGGATGACGCTGC
AGATGTTGCATTGTCTTTGGCAGAGTCGGAAGATTGGATGCCTGAAACTC
GTTTGGCTGCTCTAGAGTTGCTTGTGTCGCTGGCATCATTTGGTGGAGCT
GTTGCAAGGCGATCCAGTGTCCTTGCGGAGCGTGCAGTCCCTGCAGCAGT
TGGATTGTTTGCTGGGGTTGTGGATGATGACGAAAACACTGAGGAAGCAT
TGTTAGAATGGGGACGAGCAAGGAATGATGAGCATTCCTTAACGATGGAG
CCAAGTGATGATGATCCATTGGAAGATGGTGGTATTACTGCACTGTCAAG
ACTTTCTCACGCATTGGGTGGTGCTTCTGTGATGGATCGCCTTGTTCCTT
TGCTTGGTGAATTGGTCGAAGATGACAGATGGGAACGAAGAAGAGCAGCT
GCTATTGCACTTACTGCGATTGGGGCAGGTGCGAGGAAGGAGATTTTGAG
AGAAGTGAGGGGTGTGAGTGAGTCAGTGTGGAGGCCATTGTTGCGAGATG
CACATCCTCGAGTTCGGAATGTGACTGCTGCATCAATTGCTCAAGTTGCT
GAAGTATTGCTACCTTCTCGAACAGACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90842:17..646+

>mRNA_M-pyrifera_M_contig90842.21057.1 ID=mRNA_M-pyrifera_M_contig90842.21057.1|Name=mRNA_M-pyrifera_M_contig90842.21057.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig90842:17..646+ (Macrocystis pyrifera P11B4 male)
CTAGCAACGAATGTGCCTTCGTTATTTCGAGATTGTGTGGATGACGCTGC
AGATGTTGCATTGTCTTTGGCAGAGTCGGAAGATTGGATGCCTGAAACTC
GTTTGGCTGCTCTAGAGTTGCTTGTGTCGCTGGCATCATTTGGTGGAGCT
GTTGCAAGGCGATCCAGTGTCCTTGCGGAGCGTGCAGTCCCTGCAGCAGT
TGGATTGTTTGCTGGGGTTGTGGATGATGACGAAAACACTGAGGAAGCAT
TGTTAGAATGGGGACGAGCAAGGAATGATGAGCATTCCTTAACGATGGAG
CCAAGTGATGATGATCCATTGGAAGATGGTGGTATTACTGCACTGTCAAG
ACTTTCTCACGCATTGGGTGGTGCTTCTGTGATGGATCGCCTTGTTCCTT
TGCTTGGTGAATTGGTCGAAGATGACAGATGGGAACGAAGAAGAGCAGCT
GCTATTGCACTTACTGCGATTGGGGCAGGTGCGAGGAAGGAGATTTTGAG
AGAAGTGAGGGGTGTGAGTGAGTCAGTGTGGAGGCCATTGTTGCGAGATG
CACATCCTCGAGTTCGGAATGTGACTGCTGCATCAATTGCTCAAGTTGCT
GAAGTATTGCTACCTTCTCGAACAGACAAGCTAGCAACGAATGTGCCTTC
GTTATTTCGAGATTGTGTGGATGACGCTGCAGATGTTGCATTGTCTTTGG
CAGAGTCGGAAGATTGGATGCCTGAAACTCGTTTGGCTGCTCTAGAGTTG
CTTGTGTCGCTGGCATCATTTGGTGGAGCTGTTGCAAGGCGATCCAGTGT
CCTTGCGGAGCGTGCAGTCCCTGCAGCAGTTGGATTGTTTGCTGGGGTTG
TGGATGATGACGAAAACACTGAGGAAGCATTGTTAGAATGGGGACGAGCA
AGGAATGATGAGCATTCCTTAACGATGGAGCCAAGTGATGATGATCCATT
GGAAGATGGTGGTATTACTGCACTGTCAAGACTTTCTCACGCATTGGGTG
GTGCTTCTGTGATGGATCGCCTTGTTCCTTTGCTTGGTGAATTGGTCGAA
GATGACAGATGGGAACGAAGAAGAGCAGCTGCTATTGCACTTACTGCGAT
TGGGGCAGGTGCGAGGAAGGAGATTTTGAGAGAAGTGAGGGGTGTGAGTG
AGTCAGTGTGGAGGCCATTGTTGCGAGATGCACATCCTCGAGTTCGGAAT
GTGACTGCTGCATCAATTGCTCAAGTTGCTGAAGTATTGCTACCTTCTCG
AACAGACAAG
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