mRNA_M-pyrifera_M_contig90815.21048.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90815.21048.1
Unique NamemRNA_M-pyrifera_M_contig90815.21048.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90815.21048.1 vs. uniprot
Match: I7M0I5_TETTS (RNA recognition motif protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M0I5_TETTS)

HSP 1 Score: 49.3 bits (116), Expect = 2.300e-5
Identity = 15/34 (44.12%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   61 KQGAKRCPHCLIYAVKVDGCDWIKCGRCEHGWCW 162
            K+GA++CP+C +Y +++DGC  ++C RC    CW
Sbjct: 1645 KEGARKCPNCGVYIIRIDGCYRVECRRCNQHICW 1678
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BLAST of mRNA_M-pyrifera_M_contig90815.21048.1 vs. uniprot
Match: T2M4D7_HYDVU (RBR-type E3 ubiquitin transferase n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M4D7_HYDVU)

HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5
Identity = 17/48 (35.42%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   19 LLKTAEQDEKQCVAKQGAKRCPHCLIYAVKVDGCDWIKCGRCEHGWCW 162
            L +  E+   +   +  +K+CP+C  Y  K+DGC+ +KC +CE  +CW
Sbjct:  356 LKQAVEEHFSETWLENNSKKCPNCSTYIEKIDGCNKMKCYKCETNFCW 403
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90815.21048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
I7M0I5_TETTS2.300e-544.12RNA recognition motif protein n=1 Tax=Tetrahymena ... [more]
T2M4D7_HYDVU4.250e-535.42RBR-type E3 ubiquitin transferase n=1 Tax=Hydra vu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90815contigM-pyrifera_M_contig90815:27..188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.182736-CDS-M-pyrifera_M_contig90815:26..1881622816820.182736-CDS-M-pyrifera_M_contig90815:26..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90815 27..188 +
1692278197.5989687-CDS-M-pyrifera_M_contig90815:26..1881692278197.5989687-CDS-M-pyrifera_M_contig90815:26..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90815 27..188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90815.21048.1prot_M-pyrifera_M_contig90815.21048.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90815 27..188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90815.21048.1

>prot_M-pyrifera_M_contig90815.21048.1 ID=prot_M-pyrifera_M_contig90815.21048.1|Name=mRNA_M-pyrifera_M_contig90815.21048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
GVCETALLKTAEQDEKQCVAKQGAKRCPHCLIYAVKVDGCDWIKCGRCEH
GWCW
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mRNA from alignment at M-pyrifera_M_contig90815:27..188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90815.21048.1 ID=mRNA_M-pyrifera_M_contig90815.21048.1|Name=mRNA_M-pyrifera_M_contig90815.21048.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig90815:27..188+ (Macrocystis pyrifera P11B4 male)
GGAGTATGTGAGACAGCGCTCCTCAAGACAGCGGAACAGGATGAGAAGCA
GTGTGTGGCAAAGCAAGGCGCCAAGAGATGCCCCCACTGCCTCATTTACG
CCGTCAAGGTCGACGGCTGTGATTGGATCAAGTGTGGGAGATGTGAACAT
GGTTGGTGTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90815:27..188+

>mRNA_M-pyrifera_M_contig90815.21048.1 ID=mRNA_M-pyrifera_M_contig90815.21048.1|Name=mRNA_M-pyrifera_M_contig90815.21048.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig90815:27..188+ (Macrocystis pyrifera P11B4 male)
GGAGTATGTGAGACAGCGCTCCTCAAGACAGCGGAACAGGATGAGAAGCA
GTGTGTGGCAAAGCAAGGCGCCAAGAGATGCCCCCACTGCCTCATTTACG
CCGTCAAGGTCGACGGCTGTGATTGGATCAAGTGTGGGAGATGTGAACAT
GGTTGGTGTTGGGGAGTATGTGAGACAGCGCTCCTCAAGACAGCGGAACA
GGATGAGAAGCAGTGTGTGGCAAAGCAAGGCGCCAAGAGATGCCCCCACT
GCCTCATTTACGCCGTCAAGGTCGACGGCTGTGATTGGATCAAGTGTGGG
AGATGTGAACATGGTTGGTGTTGG
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