prot_M-pyrifera_M_contig90815.21048.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig90815.21048.1
Unique Nameprot_M-pyrifera_M_contig90815.21048.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length54
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig90815.21048.1 vs. uniprot
Match: I7M0I5_TETTS (RNA recognition motif protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M0I5_TETTS)

HSP 1 Score: 49.3 bits (116), Expect = 2.300e-5
Identity = 15/34 (44.12%), Postives = 25/34 (73.53%), Query Frame = 0 
Query:   21 KQGAKRCPHCLIYAVKVDGCDWIKCGRCEHGWCW 54
            K+GA++CP+C +Y +++DGC  ++C RC    CW
Sbjct: 1645 KEGARKCPNCGVYIIRIDGCYRVECRRCNQHICW 1678
[Close]
BLAST of mRNA_M-pyrifera_M_contig90815.21048.1 vs. uniprot
Match: T2M4D7_HYDVU (RBR-type E3 ubiquitin transferase n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M4D7_HYDVU)

HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5
Identity = 17/48 (35.42%), Postives = 29/48 (60.42%), Query Frame = 0 
Query:    7 LLKTAEQDEKQCVAKQGAKRCPHCLIYAVKVDGCDWIKCGRCEHGWCW 54
            L +  E+   +   +  +K+CP+C  Y  K+DGC+ +KC +CE  +CW
Sbjct:  356 LKQAVEEHFSETWLENNSKKCPNCSTYIEKIDGCNKMKCYKCETNFCW 403
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90815.21048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
I7M0I5_TETTS2.300e-544.12RNA recognition motif protein n=1 Tax=Tetrahymena ... [more]
T2M4D7_HYDVU4.250e-535.42RBR-type E3 ubiquitin transferase n=1 Tax=Hydra vu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1750coord: 2..54
e-value: 5.5E-6
score: 28.3
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 16..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90815contigM-pyrifera_M_contig90815:27..188 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90815.21048.1mRNA_M-pyrifera_M_contig90815.21048.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig90815 27..188 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig90815.21048.1 ID=prot_M-pyrifera_M_contig90815.21048.1|Name=mRNA_M-pyrifera_M_contig90815.21048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
GVCETALLKTAEQDEKQCVAKQGAKRCPHCLIYAVKVDGCDWIKCGRCEH
GWCW
back to top