mRNA_M-pyrifera_M_contig908.21044.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: H3GB80_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB80_PHYRM) HSP 1 Score: 143 bits (360), Expect = 9.080e-40 Identity = 72/183 (39.34%), Postives = 111/183 (60.66%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSD 519 AM S+ A +W+ + E S+ K++ +++VP PKGRK +G WV +V + +R A+ FSQ G D+ +APV + S+RIV ++AA + + Q+DVKTAFL + E++Y QP G+ +D + ++CKLK+SLYG +QSPR W+ TI ++ GFK C D C+Y+ D Sbjct: 8 AMESSDAVKWKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKNCESDHCVYLKRD 188
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM) HSP 1 Score: 144 bits (362), Expect = 9.810e-40 Identity = 73/183 (39.89%), Postives = 112/183 (61.20%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSD 519 AM S+ A++W+ + E S+ K++ +++VP PKGRK +G WV +V + +R A+ FSQ G D+ +APV + S+RIV ++AA + + Q+DVKTAFL + E++Y QP G+ +D + ++CKLK+SLYG +QSPR W+ TI ++ GFK C D CIY+ D Sbjct: 8 AMESSDAAKWKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD 188
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA) HSP 1 Score: 147 bits (370), Expect = 4.530e-39 Identity = 77/183 (42.08%), Postives = 110/183 (60.11%), Query Frame = 1 Query: 4 MASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSDN 522 M S+ AS+W+ E E S+ K++ +ELVP P+GRK + S WV KV Y +R A+ F Q G DF +APV + S+RI+ +IAA + + Q+DVKTAFL ++EE+Y +QP GF +D ++CKLK++LYG +QSPR W+ TI + GF C D C+YV D+ Sbjct: 1 MESSDASKWKEACESEFESLCKNKTWELVPLPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGF--VDAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD 181
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM) HSP 1 Score: 148 bits (374), Expect = 9.500e-39 Identity = 75/184 (40.76%), Postives = 112/184 (60.87%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSDN 522 AM S+ A +W+ + E+ S+ K+E + LVP PKGRK +G WV +V + +R A+ FSQ G D+ +APV + S+R++ ++AA + V Q+DVKTAFL + E++Y QP G+ +D + Y+C+LK+SLYG +QSPR W+ TI ++ GFK C D CIY+ DN Sbjct: 75 AMESSDADKWKEACDSEVESLRKNETWTLVPLPKGRKAIGCRWVFRVKENQSGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGY--VDGDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRDN 256
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 147 bits (372), Expect = 6.410e-38 Identity = 78/178 (43.82%), Postives = 114/178 (64.04%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPA---PKGRKIVGSMWVCKVYT-----SRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLN-GQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIY 507 AM S Q++EW+ M +ELAS+ H+V +L+P P G ++G+ WV +V T +R Q ++Q G D + +APVC+I S R++ AIAA+ W VI +DV+TAFL ++ E++Y Q GF+K++ + G+P + KLKKSLYG RQSP W+ TI +L KGF DPC+Y Sbjct: 650 AMNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVY 827
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.200e-37 Identity = 81/182 (44.51%), Postives = 106/182 (58.24%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVP---APKGRKIVGSMWVCK-----VYTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSDN 522 A AS A++W A ERE+ S+S +VY+LVP P RK + S WV K + R AQ ++QV G D GS YAPVCRI SVR+V+ I N Q+DV TAFL +++ EE++ QP GF+ D +G + KL +SLYG QSP NW TI L+ GF DPC+Y+ N Sbjct: 938 ARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHN 1119
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: H3G6E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6E3_PHYRM) HSP 1 Score: 137 bits (344), Expect = 1.220e-37 Identity = 67/164 (40.85%), Postives = 101/164 (61.59%), Query Frame = 1 Query: 58 SMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSD 519 S+ K++ +++VP PKGRK +G WV +V + +R A+ FSQ G D+ +APV + S+RIV ++AA + + Q+DVKTAFL + E++Y QP G+ +D + ++CKLK+SLYG +QSPR W+ TI ++ GFK C D CIY+ D Sbjct: 9 SLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDLCIYLKRD 170
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 139 bits (350), Expect = 3.040e-37 Identity = 71/183 (38.80%), Postives = 109/183 (59.56%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSD 519 AM S A +W+ + E S+ K++ +++VP PKGRK +G WV +V + +R A+ FSQ D+ +APV + S+RIV ++AA + + Q+DVKTAFL + E++Y QP G+ +D + ++CKLK+SLYG +QSPR W+ TI ++ GFK C D C+Y+ D Sbjct: 30 AMESTDAVKWKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD 210
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: H3H1B2_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1B2_PHYRM) HSP 1 Score: 142 bits (359), Expect = 3.630e-37 Identity = 73/183 (39.89%), Postives = 111/183 (60.66%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKV----------YTSRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSD 519 AM S+ A +W+ + E S+ K++ +++VP PKGRK +G WV +V + +R A+ FSQ G D+ +APV + S+RIV ++AA + + Q+DVKTAFL + E++Y QP G+ +D + ++CKLK+SLYG +QSPR W+ TI ++ GFK C D CIY+ D Sbjct: 30 AMESSDAVKWKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD 210
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 144 bits (364), Expect = 3.670e-37 Identity = 76/183 (41.53%), Postives = 110/183 (60.11%), Query Frame = 1 Query: 1 AMASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKVYT----------SRFCAQRFSQVAGTDFGSMYAPVCRIPSVRIVSAIAASHNWNVIQLDVKTAFLQSEMKEELYARQPVGFDKLDLNGQPYICKLKKSLYGFRQSPRNWHGTIHHELIAKGFKGCTCDPCIYVTSD 519 A++S Q ++W ME+E+ S+ +EV+ LV P+ RK VGS WV +V T +R AQ FSQ G D+ ++PV R SVR V A+AA H + Q+DV TAFL ++KEE+Y +QP GF +D + +C+L++S+ G +QSPR W+ + +L GF T DPCIYV + Sbjct: 136 ALSSPQKTKWVKAMEKEMESLKTNEVWNLVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGF--IDKGKEHLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEE 316 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig908.21044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig908.21044.1 >prot_M-pyrifera_M_contig908.21044.1 ID=prot_M-pyrifera_M_contig908.21044.1|Name=mRNA_M-pyrifera_M_contig908.21044.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp MASAQASEWQAPMERELASMSKHEVYELVPAPKGRKIVGSMWVCKVYTSRback to top mRNA from alignment at M-pyrifera_M_contig908:17619..18140- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig908.21044.1 ID=mRNA_M-pyrifera_M_contig908.21044.1|Name=mRNA_M-pyrifera_M_contig908.21044.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig908:17619..18140- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig908:17619..18140- >mRNA_M-pyrifera_M_contig908.21044.1 ID=mRNA_M-pyrifera_M_contig908.21044.1|Name=mRNA_M-pyrifera_M_contig908.21044.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig908:17619..18140- (Macrocystis pyrifera P11B4 male)back to top |