mRNA_M-pyrifera_M_contig90765.21038.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90765.21038.1
Unique NamemRNA_M-pyrifera_M_contig90765.21038.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90765.21038.1 vs. uniprot
Match: A0A2E1KKX6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KKX6_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.010e-5
Identity = 32/107 (29.91%), Postives = 48/107 (44.86%), Query Frame = 1 
Query:   40 LGGELWHYGGAS---HQNAQARLVYGFIPWIVRADASLIWANYKGDLRGNGWTLHYAMPLDPDGRKHR-------DTRGPVIPSVRAVAVREGIDDRKYIETLRYYA 330
            LG  LW YG      +  A  R  +G   W      + +W    G  RG  W+      +D    +H+       +  G +IP+ R  A+REGIDD +Y+ TL+ +A
Sbjct:  808 LGKXLWSYGXXXXXXYTTADLRHYFGRYLWKSGLKGASLWCYNHGRFRGRFWSYIDRTQVDFSPTEHKLMFSYVWEEDGEIIPTARWEAIREGIDDYRYLRTLKQFA 914
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90765.21038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E1KKX6_9PLAN5.010e-529.91Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90765contigM-pyrifera_M_contig90765:212..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.7216759-CDS-M-pyrifera_M_contig90765:211..7241622816819.7216759-CDS-M-pyrifera_M_contig90765:211..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90765 212..724 +
1692278197.3018472-CDS-M-pyrifera_M_contig90765:211..7241692278197.3018472-CDS-M-pyrifera_M_contig90765:211..724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90765 212..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90765.21038.1prot_M-pyrifera_M_contig90765.21038.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90765 212..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90765.21038.1

>prot_M-pyrifera_M_contig90765.21038.1 ID=prot_M-pyrifera_M_contig90765.21038.1|Name=mRNA_M-pyrifera_M_contig90765.21038.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
NTLSPAAARLQHRLGGELWHYGGASHQNAQARLVYGFIPWIVRADASLIW
ANYKGDLRGNGWTLHYAMPLDPDGRKHRDTRGPVIPSVRAVAVREGIDDR
KYIETLRYYATRYRSESDLRYLDTLSRAARRLLLSIKGVGGLDNVEAAVA
RGAGMIQLRGELRERIVRLLA
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mRNA from alignment at M-pyrifera_M_contig90765:212..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90765.21038.1 ID=mRNA_M-pyrifera_M_contig90765.21038.1|Name=mRNA_M-pyrifera_M_contig90765.21038.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig90765:212..724+ (Macrocystis pyrifera P11B4 male)
AATACCCTGAGCCCGGCCGCGGCGCGATTACAGCACCGTCTTGGCGGCGA
ACTGTGGCATTACGGCGGCGCGAGTCACCAGAATGCGCAGGCACGGCTCG
TGTACGGTTTCATACCGTGGATCGTGCGTGCCGACGCGAGCCTCATCTGG
GCGAATTACAAGGGTGACTTGCGCGGCAACGGCTGGACCCTGCATTACGC
AATGCCGCTCGATCCCGATGGCAGGAAACACCGCGATACCCGCGGGCCGG
TAATCCCGAGCGTACGCGCGGTCGCGGTCAGGGAAGGTATCGATGATCGG
AAATACATCGAGACGCTGCGCTATTACGCCACTCGCTACCGCTCGGAATC
GGATTTGCGCTATCTCGACACACTGAGCCGCGCCGCGCGCAGACTATTGT
TGAGTATCAAGGGAGTGGGTGGCCTCGACAATGTTGAAGCTGCAGTTGCG
CGCGGCGCCGGCATGATCCAGCTGCGGGGGGAACTGCGCGAACGCATCGT
GCGGCTGCTCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90765:212..724+

>mRNA_M-pyrifera_M_contig90765.21038.1 ID=mRNA_M-pyrifera_M_contig90765.21038.1|Name=mRNA_M-pyrifera_M_contig90765.21038.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig90765:212..724+ (Macrocystis pyrifera P11B4 male)
AATACCCTGAGCCCGGCCGCGGCGCGATTACAGCACCGTCTTGGCGGCGA
ACTGTGGCATTACGGCGGCGCGAGTCACCAGAATGCGCAGGCACGGCTCG
TGTACGGTTTCATACCGTGGATCGTGCGTGCCGACGCGAGCCTCATCTGG
GCGAATTACAAGGGTGACTTGCGCGGCAACGGCTGGACCCTGCATTACGC
AATGCCGCTCGATCCCGATGGCAGGAAACACCGCGATACCCGCGGGCCGG
TAATCCCGAGCGTACGCGCGGTCGCGGTCAGGGAAGGTATCGATGATCGG
AAATACATCGAGACGCTGCGCTATTACGCCACTCGCTACCGCTCGGAATC
GGATTTGCGCTATCTCGACACACTGAGCCGCGCCGCGCGCAGACTATTGT
TGAGTATCAAGGGAGTGGGTGGCCTCGACAATGTTGAAGCTGCAGTTGCG
CGCGGCGCCGGCATGATCCAGCTGCGGGGGGAACTGCGCGAACGCATCGT
GCGGCTGCTCGCGAATACCCTGAGCCCGGCCGCGGCGCGATTACAGCACC
GTCTTGGCGGCGAACTGTGGCATTACGGCGGCGCGAGTCACCAGAATGCG
CAGGCACGGCTCGTGTACGGTTTCATACCGTGGATCGTGCGTGCCGACGC
GAGCCTCATCTGGGCGAATTACAAGGGTGACTTGCGCGGCAACGGCTGGA
CCCTGCATTACGCAATGCCGCTCGATCCCGATGGCAGGAAACACCGCGAT
ACCCGCGGGCCGGTAATCCCGAGCGTACGCGCGGTCGCGGTCAGGGAAGG
TATCGATGATCGGAAATACATCGAGACGCTGCGCTATTACGCCACTCGCT
ACCGCTCGGAATCGGATTTGCGCTATCTCGACACACTGAGCCGCGCCGCG
CGCAGACTATTGTTGAGTATCAAGGGAGTGGGTGGCCTCGACAATGTTGA
AGCTGCAGTTGCGCGCGGCGCCGGCATGATCCAGCTGCGGGGGGAACTGC
GCGAACGCATCGTGCGGCTGCTCGCG
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