mRNA_M-pyrifera_M_contig90661.21020.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig90661.21020.1
Unique Name	mRNA_M-pyrifera_M_contig90661.21020.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig90661.21020.1 vs. uniprot
Match: A0A2P6N7W0_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N7W0_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-6
Identity = 33/88 (37.50%), Postives = 41/88 (46.59%), Query Frame = 1

Query:    1 CEGCNDGAVCEGEGHMAASQGYWQSRQDSWEFYDCEVFRFACCPHGNCTAGA---DAPCAMGRRGVLCAECDEGYSSMGPTAPCVPCE 255
            C  C D   C  E    A  GYW +  D  E + C V     CP   C A     ++ C   RRGVLC EC+EGY+    T+ C+P E
Sbjct:  573 CSPCPDHVTCTTEKTPQAQGGYWCAVDDGGEEFTCHV-----CPDQYCRADDHDWNSSCNDNRRGVLCGECEEGYTLAFLTSKCMPRE 655

[Close]

BLAST of mRNA_M-pyrifera_M_contig90661.21020.1 vs. uniprot
Match: A0A8J8NGL8_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NGL8_HALGN)

HSP 1 Score: 50.1 bits (118), Expect = 5.950e-5
Identity = 27/85 (31.76%), Postives = 41/85 (48.24%), Query Frame = 1

Query:    1 CEGCND-GAVCEGEGHMAASQGYWQSRQDSWEFYDCEVFRFACCPHGNCTAGADAPCAMGRRGVLCAECDEGYSSMGPTAPCVPC 252
            C+ C D  + C G   +    GYW+    S +F  C ++ +AC      +  A   CA G +G+LCA+C +GYS    +  C  C
Sbjct:  776 CKKCQDLVSECPGGNEIYPLPGYWRISNQSDDFLKC-LYPYACNGRQQLSNNAQGTCAEGYQGILCADCQKGYSKSHSSNRCSQC 859

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig90661.21020.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig90661.21020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A2P6N7W0_9EUKA	1.010e-6	37.50	Uncharacterized protein n=1 Tax=Planoprotostelium ...	[more]
A0A8J8NGL8_HALGN	5.950e-5	31.76	Uncharacterized protein n=1 Tax=Halteria grandinel...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig90661	contig	M-pyrifera_M_contig90661:6..284 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	279
Cds size	279
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816818.5628386-CDS-M-pyrifera_M_contig90661:5..284	1622816818.5628386-CDS-M-pyrifera_M_contig90661:5..284	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig90661 6..284 -
1692278196.545934-CDS-M-pyrifera_M_contig90661:5..284	1692278196.545934-CDS-M-pyrifera_M_contig90661:5..284	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig90661 6..284 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig90661.21020.1	prot_M-pyrifera_M_contig90661.21020.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig90661 6..284 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig90661:6..284-
coding sequence from alignment at M-pyrifera_M_contig90661:6..284-

protein sequence of mRNA_M-pyrifera_M_contig90661.21020.1

>prot_M-pyrifera_M_contig90661.21020.1 ID=prot_M-pyrifera_M_contig90661.21020.1|Name=mRNA_M-pyrifera_M_contig90661.21020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
CEGCNDGAVCEGEGHMAASQGYWQSRQDSWEFYDCEVFRFACCPHGNCTA
GADAPCAMGRRGVLCAECDEGYSSMGPTAPCVPCEAADAAALS

mRNA from alignment at M-pyrifera_M_contig90661:6..284-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig90661.21020.1 ID=mRNA_M-pyrifera_M_contig90661.21020.1|Name=mRNA_M-pyrifera_M_contig90661.21020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig90661:6..284- (Macrocystis pyrifera P11B4 male)
TGTGAAGGGTGCAACGATGGTGCAGTGTGCGAGGGTGAAGGCCACATGGC
AGCATCACAAGGCTACTGGCAGAGCCGCCAAGACTCTTGGGAGTTTTACG
ATTGTGAGGTATTCCGCTTTGCTTGTTGTCCGCATGGGAATTGCACAGCA
GGAGCCGATGCGCCGTGTGCAATGGGGAGGAGAGGGGTGTTGTGTGCAGA
GTGTGATGAAGGGTACTCTTCCATGGGCCCGACAGCGCCCTGCGTTCCGT
GTGAAGCTGCAGACGCCGCTGCCTTGTCC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90661:6..284-

>mRNA_M-pyrifera_M_contig90661.21020.1 ID=mRNA_M-pyrifera_M_contig90661.21020.1|Name=mRNA_M-pyrifera_M_contig90661.21020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig90661:6..284- (Macrocystis pyrifera P11B4 male)
TGTGAAGGGTGCAACGATGGTGCAGTGTGCGAGGGTGAAGGCCACATGGC
AGCATCACAAGGCTACTGGCAGAGCCGCCAAGACTCTTGGGAGTTTTACG
ATTGTGAGGTATTCCGCTTTGCTTGTTGTCCGCATGGGAATTGCACAGCA
GGAGCCGATGCGCCGTGTGCAATGGGGAGGAGAGGGGTGTTGTGTGCAGA
GTGTGATGAAGGGTACTCTTCCATGGGCCCGACAGCGCCCTGCGTTCCGT
GTGAAGCTGCAGACGCCGCTGCCTTGTCCTGTGAAGGGTGCAACGATGGT
GCAGTGTGCGAGGGTGAAGGCCACATGGCAGCATCACAAGGCTACTGGCA
GAGCCGCCAAGACTCTTGGGAGTTTTACGATTGTGAGGTATTCCGCTTTG
CTTGTTGTCCGCATGGGAATTGCACAGCAGGAGCCGATGCGCCGTGTGCA
ATGGGGAGGAGAGGGGTGTTGTGTGCAGAGTGTGATGAAGGGTACTCTTC
CATGGGCCCGACAGCGCCCTGCGTTCCGTGTGAAGCTGCAGACGCCGCTG
CCTTGTCC