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Homology
BLAST of mRNA_M-pyrifera_M_contig90661.21020.1 vs. uniprot
Match: A0A2P6N7W0_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N7W0_9EUKA) HSP 1 Score: 55.1 bits (131), Expect = 1.010e-6 Identity = 33/88 (37.50%), Postives = 41/88 (46.59%), Query Frame = 1 Query: 1 CEGCNDGAVCEGEGHMAASQGYWQSRQDSWEFYDCEVFRFACCPHGNCTAGA---DAPCAMGRRGVLCAECDEGYSSMGPTAPCVPCE 255
C C D C E A GYW + D E + C V CP C A ++ C RRGVLC EC+EGY+ T+ C+P E
Sbjct: 573 CSPCPDHVTCTTEKTPQAQGGYWCAVDDGGEEFTCHV-----CPDQYCRADDHDWNSSCNDNRRGVLCGECEEGYTLAFLTSKCMPRE 655
BLAST of mRNA_M-pyrifera_M_contig90661.21020.1 vs. uniprot
Match: A0A8J8NGL8_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NGL8_HALGN) HSP 1 Score: 50.1 bits (118), Expect = 5.950e-5 Identity = 27/85 (31.76%), Postives = 41/85 (48.24%), Query Frame = 1 Query: 1 CEGCND-GAVCEGEGHMAASQGYWQSRQDSWEFYDCEVFRFACCPHGNCTAGADAPCAMGRRGVLCAECDEGYSSMGPTAPCVPC 252
C+ C D + C G + GYW+ S +F C ++ +AC + A CA G +G+LCA+C +GYS + C C
Sbjct: 776 CKKCQDLVSECPGGNEIYPLPGYWRISNQSDDFLKC-LYPYACNGRQQLSNNAQGTCAEGYQGILCADCQKGYSKSHSSNRCSQC 859
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 279 |
| Cds size | 279 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816818.5628386-CDS-M-pyrifera_M_contig90661:5..284 | 1622816818.5628386-CDS-M-pyrifera_M_contig90661:5..284 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig90661 6..284 - |
| 1692278196.545934-CDS-M-pyrifera_M_contig90661:5..284 | 1692278196.545934-CDS-M-pyrifera_M_contig90661:5..284 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig90661 6..284 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig90661.21020.1 >prot_M-pyrifera_M_contig90661.21020.1 ID=prot_M-pyrifera_M_contig90661.21020.1|Name=mRNA_M-pyrifera_M_contig90661.21020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
CEGCNDGAVCEGEGHMAASQGYWQSRQDSWEFYDCEVFRFACCPHGNCTA
GADAPCAMGRRGVLCAECDEGYSSMGPTAPCVPCEAADAAALS back to topmRNA from alignment at M-pyrifera_M_contig90661:6..284- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig90661.21020.1 ID=mRNA_M-pyrifera_M_contig90661.21020.1|Name=mRNA_M-pyrifera_M_contig90661.21020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig90661:6..284- (Macrocystis pyrifera P11B4 male)
TGTGAAGGGTGCAACGATGGTGCAGTGTGCGAGGGTGAAGGCCACATGGC
AGCATCACAAGGCTACTGGCAGAGCCGCCAAGACTCTTGGGAGTTTTACG
ATTGTGAGGTATTCCGCTTTGCTTGTTGTCCGCATGGGAATTGCACAGCA
GGAGCCGATGCGCCGTGTGCAATGGGGAGGAGAGGGGTGTTGTGTGCAGA
GTGTGATGAAGGGTACTCTTCCATGGGCCCGACAGCGCCCTGCGTTCCGT
GTGAAGCTGCAGACGCCGCTGCCTTGTCC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig90661:6..284- >mRNA_M-pyrifera_M_contig90661.21020.1 ID=mRNA_M-pyrifera_M_contig90661.21020.1|Name=mRNA_M-pyrifera_M_contig90661.21020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig90661:6..284- (Macrocystis pyrifera P11B4 male)
TGTGAAGGGTGCAACGATGGTGCAGTGTGCGAGGGTGAAGGCCACATGGC
AGCATCACAAGGCTACTGGCAGAGCCGCCAAGACTCTTGGGAGTTTTACG
ATTGTGAGGTATTCCGCTTTGCTTGTTGTCCGCATGGGAATTGCACAGCA
GGAGCCGATGCGCCGTGTGCAATGGGGAGGAGAGGGGTGTTGTGTGCAGA
GTGTGATGAAGGGTACTCTTCCATGGGCCCGACAGCGCCCTGCGTTCCGT
GTGAAGCTGCAGACGCCGCTGCCTTGTCCTGTGAAGGGTGCAACGATGGT
GCAGTGTGCGAGGGTGAAGGCCACATGGCAGCATCACAAGGCTACTGGCA
GAGCCGCCAAGACTCTTGGGAGTTTTACGATTGTGAGGTATTCCGCTTTG
CTTGTTGTCCGCATGGGAATTGCACAGCAGGAGCCGATGCGCCGTGTGCA
ATGGGGAGGAGAGGGGTGTTGTGTGCAGAGTGTGATGAAGGGTACTCTTC
CATGGGCCCGACAGCGCCCTGCGTTCCGTGTGAAGCTGCAGACGCCGCTG
CCTTGTCC back to top
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