mRNA_M-pyrifera_M_contig90556.20998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90556.20998.1
Unique NamemRNA_M-pyrifera_M_contig90556.20998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90556.20998.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.230e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   37 AQIEDGHGMAEHVSRSVRRLDAIQMRVQRALALVEDVINLRGCAE 171
            AQIEDGHGMAE VSRSVRRLD IQMRVQRALALVEDVINLRGCAE
Sbjct:  133 AQIEDGHGMAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAE 177
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BLAST of mRNA_M-pyrifera_M_contig90556.20998.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.100e-9
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   16 GDVVVFQAQIEDGHGMAEHVSRSVRRLDAIQMRVQRALALVEDVINLRGCAE 171
            G+  +   QIE+   ++E VSR++RRLD  QM VQ ALALVED++NL+ CA+
Sbjct:   67 GEAAMLAEQIEESRVLSERVSRTIRRLDRAQMNVQHALALVEDIVNLKDCAQ 118
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BLAST of mRNA_M-pyrifera_M_contig90556.20998.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.680e-6
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   61 MAEHVSRSVRRLDAIQMRVQRALALVEDVINLRGCAE 171
            +AE +S SVR LD  QMRVQR LA+VED+INL+ CAE
Sbjct:  156 LAEKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAE 192
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BLAST of mRNA_M-pyrifera_M_contig90556.20998.1 vs. uniprot
Match: I2CQF7_NANGC (Oligomeric golgi complex component (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF7_NANGC)

HSP 1 Score: 48.1 bits (113), Expect = 1.950e-5
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   73 VSRSVRRLDAIQMRVQRALALVEDVINLRGCAE 171
            +S SVR LD  QMRVQR LA+VED+INL+ CAE
Sbjct:    1 MSSSVRELDERQMRVQRVLAMVEDIINLKTCAE 33
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90556.20998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE1.230e-1795.56Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2WIB6_9STRA3.100e-951.92Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A4D9D1B9_9STRA5.680e-667.57Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
I2CQF7_NANGC1.950e-569.70Oligomeric golgi complex component (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90556contigM-pyrifera_M_contig90556:471..689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size219
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.719156-CDS-M-pyrifera_M_contig90556:470..6891622816817.719156-CDS-M-pyrifera_M_contig90556:470..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90556 471..689 +
1692278196.0918956-CDS-M-pyrifera_M_contig90556:470..6891692278196.0918956-CDS-M-pyrifera_M_contig90556:470..689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90556 471..689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90556.20998.1prot_M-pyrifera_M_contig90556.20998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90556 471..689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90556.20998.1

>prot_M-pyrifera_M_contig90556.20998.1 ID=prot_M-pyrifera_M_contig90556.20998.1|Name=mRNA_M-pyrifera_M_contig90556.20998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MDGALGDVVVFQAQIEDGHGMAEHVSRSVRRLDAIQMRVQRALALVEDVI
NLRGCAEVGRREGRGGRWGGGG*
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mRNA from alignment at M-pyrifera_M_contig90556:471..689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90556.20998.1 ID=mRNA_M-pyrifera_M_contig90556.20998.1|Name=mRNA_M-pyrifera_M_contig90556.20998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig90556:471..689+ (Macrocystis pyrifera P11B4 male)
ATGGATGGTGCTCTTGGCGATGTTGTTGTTTTCCAGGCTCAAATAGAGGA
TGGGCATGGAATGGCCGAGCACGTGAGCCGCTCCGTGCGTCGGCTGGACG
CTATCCAGATGCGGGTGCAGCGGGCGCTGGCGCTCGTTGAGGACGTCATA
AATCTCAGGGGATGCGCAGAGGTAGGAAGACGGGAAGGGAGGGGGGGCAG
GTGGGGGGGGGGGGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90556:471..689+

>mRNA_M-pyrifera_M_contig90556.20998.1 ID=mRNA_M-pyrifera_M_contig90556.20998.1|Name=mRNA_M-pyrifera_M_contig90556.20998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig90556:471..689+ (Macrocystis pyrifera P11B4 male)
ATGGATGGTGCTCTTGGCGATGTTGTTGTTTTCCAGGCTCAAATAGAGGA
TGGGCATGGAATGGCCGAGCACGTGAGCCGCTCCGTGCGTCGGCTGGACG
CTATCCAGATGCGGGTGCAGCGGGCGCTGGCGCTCGTTGAGGACGTCATA
AATCTCAGGGGATGCGCAGAGGTAGGAAGACGGGAAGGGAGGGGGGGCAG
GTGGGGGGGGGGGGGGTGAATGGATGGTGCTCTTGGCGATGTTGTTGTTT
TCCAGGCTCAAATAGAGGATGGGCATGGAATGGCCGAGCACGTGAGCCGC
TCCGTGCGTCGGCTGGACGCTATCCAGATGCGGGTGCAGCGGGCGCTGGC
GCTCGTTGAGGACGTCATAAATCTCAGGGGATGCGCAGAGGTAGGAAGAC
GGGAAGGGAGGGGGGGCAGGTGGGGGGGGGGGGGGTGA
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