mRNA_M-pyrifera_M_contig90354.20946.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI) HSP 1 Score: 107 bits (268), Expect = 4.120e-28 Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1 Query: 10 KHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVRVTGLP 330 +HK L+LAKGYRGR+ V K+A RVE ALQ AY RK KKR R LWI+R+NA VR + Y F+ R + + LNRKVL+E+A+ EP+SFRAV E V+ G P Sbjct: 7 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSP 113
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A835VT88_CHLIN (50S ribosomal protein L20 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VT88_CHLIN) HSP 1 Score: 107 bits (268), Expect = 7.940e-28 Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1 Query: 25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR-VTGLP 330 L+LA +RGRA K+A+ RVE ALQHAYVGRKLKKR RS+WIQR+NAA R ++Y I +A +ALNRKVLSELA++EP SF+A+ E VR + GLP Sbjct: 9 LQLASSFRGRARNCIKIARLRVEKALQHAYVGRKLKKRHWRSVWIQRINAASREHGMTYTGLITGLKAENVALNRKVLSELAMSEPFSFKALVEQVRFMRGLP 111
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A8HNL1_CHLRE (50S ribosomal protein L20 n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8HNL1_CHLRE) HSP 1 Score: 106 bits (265), Expect = 1.180e-27 Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1 Query: 25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR-VTGLP 330 L+LA +RGRA +A+ RVE ALQHAYVGRKLKKR RS+WIQR+NAA R +SY I +A +ALNRKVLSELA++EP SF+A+ E VR + GLP Sbjct: 9 LQLASSFRGRARTCINIARLRVEKALQHAYVGRKLKKRHWRSVWIQRINAASREHGMSYTGLITGLKAENVALNRKVLSELAMSEPFSFKALVEQVRHMRGLP 111
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A2E4T0C7_9FLAO (50S ribosomal protein L20 n=5 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E4T0C7_9FLAO) HSP 1 Score: 105 bits (261), Expect = 4.760e-27 Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1 Query: 4 RAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315 +A+ K L+ AKGY GR VH VAK VE A+Q+AY+GRK KKR RSLWIQR+NA VR +SY F+ A GIALNRKVL++LA+ P +F+AV + V+ Sbjct: 11 KARRKKVLKAAKGYFGRRKNVHTVAKNAVEKAMQYAYIGRKQKKRNFRSLWIQRINAGVREHGLSYSTFMGAISNKGIALNRKVLADLAMNHPEAFKAVVDKVK 114
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A7S3VIJ1_DUNTE (50S ribosomal protein L20 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VIJ1_DUNTE) HSP 1 Score: 104 bits (260), Expect = 6.750e-27 Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVRVTGLP 330 L LAKG+RGRA V +A+ RV ALQHAY GRK KKR R+LWIQR+NA R ++Y F+P A I LNRKVLSELA+ EP SF+A+ + V++ P Sbjct: 8 LHLAKGFRGRAKNVFSIARSRVHKALQHAYRGRKEKKRDMRALWIQRINAGTREHGLTYSQFMPGLSAQNIQLNRKVLSELAMTEPFSFKALVDQVKMMKGP 109
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A2E5XVA9_9FLAO (50S ribosomal protein L20 n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E5XVA9_9FLAO) HSP 1 Score: 103 bits (258), Expect = 1.360e-26 Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1 Query: 4 RAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315 +A+ K L+ AKGY GR VH VAK VE A+Q+AY+GRK KKR RSLWIQR+NA R +SY +F+ A GIALNRKVL++LA+ P +F+A+ + V+ Sbjct: 11 KARRKKVLKAAKGYFGRRKNVHTVAKNAVEKAMQYAYIGRKQKKRNFRSLWIQRINAGAREHGMSYSNFMGAVAKKGIALNRKVLADLAMNHPTAFKAIVDEVK 114
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A2J7ZXC1_9CHLO (50S ribosomal protein L20 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZXC1_9CHLO) HSP 1 Score: 103 bits (256), Expect = 2.730e-26 Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1 Query: 25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315 L+LA +RGRA +A+ RVE ALQHAY+GRKLKKR RS+WIQR+NA R V+Y FI +A + LNRKVLSELA+ EP+SF+A+ E V+ Sbjct: 9 LQLASSFRGRARNCINIARLRVEKALQHAYIGRKLKKRHWRSVWIQRINAGTREHGVTYTSFITGLKAENVQLNRKVLSELAMNEPYSFKALVEQVK 105
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A812NSR7_9DINO (RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NSR7_9DINO) HSP 1 Score: 103 bits (258), Expect = 4.740e-26 Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 1 MRAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVRVTG 324 M+ KHK LAKGY R V + A RV A +HAYVGRKLKKR R LWI ++NA ++ Y DFI + S +ALNRKVL++LAI EP+SF+AV E VR TG Sbjct: 1 MQLKHKKIRALAKGYFLRNKNVFRTALNRVNKAAEHAYVGRKLKKRDMRKLWITQVNAGLQQHGFRYSDFIHSAALSDVALNRKVLAQLAITEPYSFKAVVETVRATG 108
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: J1I1Y0_9BACT (50S ribosomal protein L20 n=2 Tax=Saprospira grandis TaxID=1008 RepID=J1I1Y0_9BACT) HSP 1 Score: 102 bits (254), Expect = 5.500e-26 Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 4 RAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315 R + K L+ A+GY G S+V+ VAK VE +Q+AY+GRKLKKR+ R+LWIQR+NAAVR E +SY F+ SGI LNRKVL++LA+ EP +F+A+ V+ Sbjct: 11 RRRKKKILKQARGYFGARSKVYTVAKNAVEKGMQYAYIGRKLKKRSYRALWIQRINAAVRQEGLSYSRFMHLLSQSGIELNRKVLADLAMNEPAAFKAIVNAVK 114
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: B8BRX1_THAPS (50S ribosomal protein L20 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRX1_THAPS) HSP 1 Score: 102 bits (253), Expect = 6.040e-26 Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 1 Query: 10 KHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315 KHK ++L+KG+RGRA+R ++VA R+E + Q+AY RK+KKR R LWIQRLNA VR + +SY FI +G+ L+RK+LS LA+ EP SF+AV +VV+ Sbjct: 5 KHKRVIKLSKGFRGRANRCYRVAIRRLEKSWQYAYRDRKVKKREFRKLWIQRLNAGVRQQGLSYSKFIQLQGKTGVVLDRKILSTLAMYEPFSFKAVVDVVK 106 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig90354.20946.1 >prot_M-pyrifera_M_contig90354.20946.1 ID=prot_M-pyrifera_M_contig90354.20946.1|Name=mRNA_M-pyrifera_M_contig90354.20946.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp MRAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSback to top mRNA from alignment at M-pyrifera_M_contig90354:221..550+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig90354.20946.1 ID=mRNA_M-pyrifera_M_contig90354.20946.1|Name=mRNA_M-pyrifera_M_contig90354.20946.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig90354:221..550+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig90354:221..550+ >mRNA_M-pyrifera_M_contig90354.20946.1 ID=mRNA_M-pyrifera_M_contig90354.20946.1|Name=mRNA_M-pyrifera_M_contig90354.20946.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig90354:221..550+ (Macrocystis pyrifera P11B4 male)back to top |