mRNA_M-pyrifera_M_contig90354.20946.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90354.20946.1
Unique NamemRNA_M-pyrifera_M_contig90354.20946.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.120e-28
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   10 KHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVRVTGLP 330
            +HK  L+LAKGYRGR+  V K+A  RVE ALQ AY  RK KKR  R LWI+R+NA VR   + Y  F+   R + + LNRKVL+E+A+ EP+SFRAV E V+  G P
Sbjct:    7 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSP 113          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A835VT88_CHLIN (50S ribosomal protein L20 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VT88_CHLIN)

HSP 1 Score: 107 bits (268), Expect = 7.940e-28
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR-VTGLP 330
            L+LA  +RGRA    K+A+ RVE ALQHAYVGRKLKKR  RS+WIQR+NAA R   ++Y   I   +A  +ALNRKVLSELA++EP SF+A+ E VR + GLP
Sbjct:    9 LQLASSFRGRARNCIKIARLRVEKALQHAYVGRKLKKRHWRSVWIQRINAASREHGMTYTGLITGLKAENVALNRKVLSELAMSEPFSFKALVEQVRFMRGLP 111          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A8HNL1_CHLRE (50S ribosomal protein L20 n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8HNL1_CHLRE)

HSP 1 Score: 106 bits (265), Expect = 1.180e-27
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR-VTGLP 330
            L+LA  +RGRA     +A+ RVE ALQHAYVGRKLKKR  RS+WIQR+NAA R   +SY   I   +A  +ALNRKVLSELA++EP SF+A+ E VR + GLP
Sbjct:    9 LQLASSFRGRARTCINIARLRVEKALQHAYVGRKLKKRHWRSVWIQRINAASREHGMSYTGLITGLKAENVALNRKVLSELAMSEPFSFKALVEQVRHMRGLP 111          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A2E4T0C7_9FLAO (50S ribosomal protein L20 n=5 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E4T0C7_9FLAO)

HSP 1 Score: 105 bits (261), Expect = 4.760e-27
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    4 RAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315
            +A+ K  L+ AKGY GR   VH VAK  VE A+Q+AY+GRK KKR  RSLWIQR+NA VR   +SY  F+ A    GIALNRKVL++LA+  P +F+AV + V+
Sbjct:   11 KARRKKVLKAAKGYFGRRKNVHTVAKNAVEKAMQYAYIGRKQKKRNFRSLWIQRINAGVREHGLSYSTFMGAISNKGIALNRKVLADLAMNHPEAFKAVVDKVK 114          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A7S3VIJ1_DUNTE (50S ribosomal protein L20 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VIJ1_DUNTE)

HSP 1 Score: 104 bits (260), Expect = 6.750e-27
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVRVTGLP 330
            L LAKG+RGRA  V  +A+ RV  ALQHAY GRK KKR  R+LWIQR+NA  R   ++Y  F+P   A  I LNRKVLSELA+ EP SF+A+ + V++   P
Sbjct:    8 LHLAKGFRGRAKNVFSIARSRVHKALQHAYRGRKEKKRDMRALWIQRINAGTREHGLTYSQFMPGLSAQNIQLNRKVLSELAMTEPFSFKALVDQVKMMKGP 109          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A2E5XVA9_9FLAO (50S ribosomal protein L20 n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E5XVA9_9FLAO)

HSP 1 Score: 103 bits (258), Expect = 1.360e-26
Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    4 RAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315
            +A+ K  L+ AKGY GR   VH VAK  VE A+Q+AY+GRK KKR  RSLWIQR+NA  R   +SY +F+ A    GIALNRKVL++LA+  P +F+A+ + V+
Sbjct:   11 KARRKKVLKAAKGYFGRRKNVHTVAKNAVEKAMQYAYIGRKQKKRNFRSLWIQRINAGAREHGMSYSNFMGAVAKKGIALNRKVLADLAMNHPTAFKAIVDEVK 114          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A2J7ZXC1_9CHLO (50S ribosomal protein L20 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZXC1_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 2.730e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   25 LRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315
            L+LA  +RGRA     +A+ RVE ALQHAY+GRKLKKR  RS+WIQR+NA  R   V+Y  FI   +A  + LNRKVLSELA+ EP+SF+A+ E V+
Sbjct:    9 LQLASSFRGRARNCINIARLRVEKALQHAYIGRKLKKRHWRSVWIQRINAGTREHGVTYTSFITGLKAENVQLNRKVLSELAMNEPYSFKALVEQVK 105          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: A0A812NSR7_9DINO (RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NSR7_9DINO)

HSP 1 Score: 103 bits (258), Expect = 4.740e-26
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 MRAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVRVTG 324
            M+ KHK    LAKGY  R   V + A  RV  A +HAYVGRKLKKR  R LWI ++NA ++     Y DFI +   S +ALNRKVL++LAI EP+SF+AV E VR TG
Sbjct:    1 MQLKHKKIRALAKGYFLRNKNVFRTALNRVNKAAEHAYVGRKLKKRDMRKLWITQVNAGLQQHGFRYSDFIHSAALSDVALNRKVLAQLAITEPYSFKAVVETVRATG 108          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: J1I1Y0_9BACT (50S ribosomal protein L20 n=2 Tax=Saprospira grandis TaxID=1008 RepID=J1I1Y0_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.500e-26
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    4 RAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315
            R + K  L+ A+GY G  S+V+ VAK  VE  +Q+AY+GRKLKKR+ R+LWIQR+NAAVR E +SY  F+     SGI LNRKVL++LA+ EP +F+A+   V+
Sbjct:   11 RRRKKKILKQARGYFGARSKVYTVAKNAVEKGMQYAYIGRKLKKRSYRALWIQRINAAVRQEGLSYSRFMHLLSQSGIELNRKVLADLAMNEPAAFKAIVNAVK 114          
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Match: B8BRX1_THAPS (50S ribosomal protein L20 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRX1_THAPS)

HSP 1 Score: 102 bits (253), Expect = 6.040e-26
Identity = 54/102 (52.94%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   10 KHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARSLWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAVFEVVR 315
            KHK  ++L+KG+RGRA+R ++VA  R+E + Q+AY  RK+KKR  R LWIQRLNA VR + +SY  FI     +G+ L+RK+LS LA+ EP SF+AV +VV+
Sbjct:    5 KHKRVIKLSKGFRGRANRCYRVAIRRLEKSWQYAYRDRKVKKREFRKLWIQRLNAGVRQQGLSYSKFIQLQGKTGVVLDRKILSTLAMYEPFSFKAVVDVVK 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90354.20946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI4.120e-2854.2150S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A835VT88_CHLIN7.940e-2859.2250S ribosomal protein L20 n=1 Tax=Chlamydomonas in... [more]
A8HNL1_CHLRE1.180e-2759.2250S ribosomal protein L20 n=2 Tax=Chlamydomonas Ta... [more]
A0A2E4T0C7_9FLAO4.760e-2754.8150S ribosomal protein L20 n=5 Tax=Flavobacteriales... [more]
A0A7S3VIJ1_DUNTE6.750e-2754.9050S ribosomal protein L20 n=1 Tax=Dunaliella terti... [more]
A0A2E5XVA9_9FLAO1.360e-2652.8850S ribosomal protein L20 n=2 Tax=Flavobacteriales... [more]
A0A2J7ZXC1_9CHLO2.730e-2656.7050S ribosomal protein L20 n=1 Tax=Tetrabaena socia... [more]
A0A812NSR7_9DINO4.740e-2653.70RplT protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
J1I1Y0_9BACT5.500e-2652.8850S ribosomal protein L20 n=2 Tax=Saprospira grand... [more]
B8BRX1_THAPS6.040e-2652.9450S ribosomal protein L20 (Fragment) n=1 Tax=Thala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90354contigM-pyrifera_M_contig90354:221..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D7G284
Preferred namerpl20
KEGG koko:K02887
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0292@1,KOG4707@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.303532-CDS-M-pyrifera_M_contig90354:220..5501622816815.303532-CDS-M-pyrifera_M_contig90354:220..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90354 221..550 +
1692278194.781753-CDS-M-pyrifera_M_contig90354:220..5501692278194.781753-CDS-M-pyrifera_M_contig90354:220..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90354 221..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90354.20946.1prot_M-pyrifera_M_contig90354.20946.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90354 221..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90354.20946.1

>prot_M-pyrifera_M_contig90354.20946.1 ID=prot_M-pyrifera_M_contig90354.20946.1|Name=mRNA_M-pyrifera_M_contig90354.20946.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MRAKHKATLRLAKGYRGRASRVHKVAKGRVETALQHAYVGRKLKKRAARS
LWIQRLNAAVRAESVSYRDFIPATRASGIALNRKVLSELAIAEPHSFRAV
FEVVRVTGLP
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mRNA from alignment at M-pyrifera_M_contig90354:221..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90354.20946.1 ID=mRNA_M-pyrifera_M_contig90354.20946.1|Name=mRNA_M-pyrifera_M_contig90354.20946.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig90354:221..550+ (Macrocystis pyrifera P11B4 male)
ATGCGAGCAAAGCACAAAGCAACCCTTCGCCTTGCGAAAGGGTACAGAGG ACGTGCGAGCAGGGTTCACAAGGTCGCAAAAGGGCGCGTCGAGACTGCAT TGCAGCATGCATACGTGGGAAGAAAACTAAAGAAAAGGGCTGCTCGGTCT TTGTGGATTCAACGACTGAATGCAGCAGTTCGGGCAGAGAGTGTCAGCTA CAGAGATTTTATTCCTGCTACTCGTGCGTCTGGTATTGCTTTGAATCGCA AAGTCTTGTCCGAGCTAGCGATTGCGGAGCCTCATTCGTTTCGGGCTGTT TTCGAAGTTGTTCGGGTCACAGGCTTGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90354:221..550+

>mRNA_M-pyrifera_M_contig90354.20946.1 ID=mRNA_M-pyrifera_M_contig90354.20946.1|Name=mRNA_M-pyrifera_M_contig90354.20946.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig90354:221..550+ (Macrocystis pyrifera P11B4 male)
ATGCGAGCAAAGCACAAAGCAACCCTTCGCCTTGCGAAAGGGTACAGAGG
ACGTGCGAGCAGGGTTCACAAGGTCGCAAAAGGGCGCGTCGAGACTGCAT
TGCAGCATGCATACGTGGGAAGAAAACTAAAGAAAAGGGCTGCTCGGTCT
TTGTGGATTCAACGACTGAATGCAGCAGTTCGGGCAGAGAGTGTCAGCTA
CAGAGATTTTATTCCTGCTACTCGTGCGTCTGGTATTGCTTTGAATCGCA
AAGTCTTGTCCGAGCTAGCGATTGCGGAGCCTCATTCGTTTCGGGCTGTT
TTCGAAGTTGTTCGGGTCACAGGCTTGCCAATGCGAGCAAAGCACAAAGC
AACCCTTCGCCTTGCGAAAGGGTACAGAGGACGTGCGAGCAGGGTTCACA
AGGTCGCAAAAGGGCGCGTCGAGACTGCATTGCAGCATGCATACGTGGGA
AGAAAACTAAAGAAAAGGGCTGCTCGGTCTTTGTGGATTCAACGACTGAA
TGCAGCAGTTCGGGCAGAGAGTGTCAGCTACAGAGATTTTATTCCTGCTA
CTCGTGCGTCTGGTATTGCTTTGAATCGCAAAGTCTTGTCCGAGCTAGCG
ATTGCGGAGCCTCATTCGTTTCGGGCTGTTTTCGAAGTTGTTCGGGTCAC
AGGCTTGCCA
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