mRNA_M-pyrifera_M_contig1100.2092.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1100.2092.1
Unique NamemRNA_M-pyrifera_M_contig1100.2092.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A6H5L712_9PHAE (TRANSKETOLASE_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L712_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.530e-60
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            MN SPSNP W GRDRFVLSNGHACALQYIMLHLCG+GVTMDDLK FRQLDS+TPGHPENFVT G+EVSTGPLGQGISNAVGMA+AERHLAATFN PDF+
Sbjct:   60 MNFSPSNPDWLGRDRFVLSNGHACALQYIMLHLCGYGVTMDDLKSFRQLDSLTPGHPENFVTPGVEVSTGPLGQGISNAVGMAIAERHLAATFNTPDFQ 158          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: D8LHQ1_ECTSI (Transketolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ1_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.300e-56
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            MN SPSNP W GRDRFVLSNGHACALQYIMLHLCG+GVTMDDLK FRQLDS+TPGHPENFVT G+EVSTGPLGQGISNAVGMA+AERHLAATFNKPDF+
Sbjct:   52 MNFSPSNPDWLGRDRFVLSNGHACALQYIMLHLCGYGVTMDDLKSFRQLDSLTPGHPENFVTPGVEVSTGPLGQGISNAVGMAIAERHLAATFNKPDFQ 150          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A7S3Q1S1_9STRA (Transketolase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1S1_9STRA)

HSP 1 Score: 171 bits (434), Expect = 5.520e-48
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFN 282
            MN SPSNP+WW RDRFVLSNGHAC+LQY MLHL G+G+T+DDLK+FRQL S+TPGHPENFVT G+EVSTGPLGQGISNAVG A+AERH AATFN
Sbjct:   69 MNYSPSNPEWWNRDRFVLSNGHACSLQYSMLHLAGYGLTIDDLKNFRQLGSLTPGHPENFVTKGVEVSTGPLGQGISNAVGFAVAERHFAATFN 162          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A9UUK8_MONBE (Transketolase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UUK8_MONBE)

HSP 1 Score: 167 bits (424), Expect = 1.130e-46
Identity = 75/99 (75.76%), Postives = 89/99 (89.90%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            MN +PSNP+W+ RDRFVLSNGHACALQY MLHL G+ +TMDDLK FRQ++S TPGHPEN +T GIEVSTGPLGQG+SNAVG+A+AE+HLAATFN+P F+
Sbjct:   56 MNYNPSNPRWFNRDRFVLSNGHACALQYCMLHLTGYDMTMDDLKSFRQVESRTPGHPENHLTEGIEVSTGPLGQGLSNAVGLALAEKHLAATFNRPGFD 154          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A8J1ZZ71_9DINO (Transketolase n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZZ71_9DINO)

HSP 1 Score: 166 bits (421), Expect = 3.210e-46
Identity = 77/98 (78.57%), Postives = 84/98 (85.71%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDF 294
            MN+SP +P W  RDRFVLSNGHACALQYIMLHL G+GV+MDDLK FRQL S TPGHPENF T G+EV TGPLGQGI+NAVGMA+AE HLAA FNKP F
Sbjct:   68 MNISPKDPNWINRDRFVLSNGHACALQYIMLHLSGYGVSMDDLKQFRQLHSKTPGHPENFCTPGVEVCTGPLGQGITNAVGMALAESHLAARFNKPGF 165          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A835Z7X0_9STRA (Transketolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.980e-46
Identity = 74/99 (74.75%), Postives = 90/99 (90.91%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            M+ SPS+PQW GRDRF+LSNGHACALQYIMLHL G  ++MDDLK FR++DS+TPGHPENFVT GIEVSTGPLGQG++NAVG+A+AE+H+AAT+NK  F+
Sbjct:   69 MSYSPSDPQWPGRDRFILSNGHACALQYIMLHLTGHSLSMDDLKSFRKVDSMTPGHPENFVTPGIEVSTGPLGQGLANAVGLAIAEKHMAATYNKEGFD 167          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A1Y1Z6H8_9FUNG (Transketolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z6H8_9FUNG)

HSP 1 Score: 161 bits (408), Expect = 1.950e-44
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDF 294
            M  +P NP+W  RDRFVLSNGHACALQY++LHLCG+ V+MDDLK FRQ++S  PGHPENF+TAGIEV+TGPLGQGISNAVG+AMAE + AATFNK  F
Sbjct:   46 MKFNPENPKWVSRDRFVLSNGHACALQYVLLHLCGYDVSMDDLKSFRQMNSKCPGHPENFMTAGIEVTTGPLGQGISNAVGLAMAEANFAATFNKEAF 143          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: F2U283_SALR5 (Transketolase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U283_SALR5)

HSP 1 Score: 160 bits (405), Expect = 5.410e-44
Identity = 72/99 (72.73%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            MN +P NP+W  RDRFVLSNGHACALQY MLHL G+ +T+DDLK FRQ+ S TPGHPEN +T GIEVSTGPLGQGISNAVG+A++ERHLA T+N+P F+
Sbjct:   56 MNYNPGNPKWSNRDRFVLSNGHACALQYCMLHLTGYPLTIDDLKHFRQVGSKTPGHPENHITEGIEVSTGPLGQGISNAVGLALSERHLAGTYNRPGFD 154          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A0J8QYS2_COCIT (Transketolase n=1 Tax=Coccidioides immitis RMSCC 3703 TaxID=454286 RepID=A0A0J8QYS2_COCIT)

HSP 1 Score: 149 bits (377), Expect = 6.840e-44
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            M+ +P NPQW  RDRFVLSNGH C LQY +LHL G+ V++DDLK+FRQLDS+TPGHPE   T G+EV+TGPLGQG +NAVG+A+A++H AA FNKP ++
Sbjct:   48 MSFNPKNPQWINRDRFVLSNGHGCMLQYALLHLFGYEVSLDDLKNFRQLDSITPGHPEAHDTPGVEVTTGPLGQGFANAVGLAIAQKHTAAVFNKPGYD 146          
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Match: A0A1Y1YM21_9FUNG (Transketolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YM21_9FUNG)

HSP 1 Score: 159 bits (401), Expect = 1.910e-43
Identity = 70/99 (70.71%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    1 MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLDSVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFE 297
            M  +P+NP W  RDRFVLSNGH+CALQY++LHL G+ VT+DDLK FRQLDS+ PGHPEN++T GIEV+TGPLGQGISNAVG+A+AE H+ A FNK DF+
Sbjct:   47 MKFNPANPSWPNRDRFVLSNGHSCALQYVLLHLLGYKVTLDDLKTFRQLDSICPGHPENYMTDGIEVTTGPLGQGISNAVGLALAEAHMEAVFNKDDFK 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1100.2092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L712_9PHAE1.530e-6088.89TRANSKETOLASE_1 domain-containing protein n=1 Tax=... [more]
D8LHQ1_ECTSI2.300e-5689.90Transketolase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S3Q1S1_9STRA5.520e-4881.91Transketolase n=1 Tax=Chaetoceros debilis TaxID=12... [more]
A9UUK8_MONBE1.130e-4675.76Transketolase n=1 Tax=Monosiga brevicollis TaxID=8... [more]
A0A8J1ZZ71_9DINO3.210e-4678.57Transketolase n=1 Tax=Amoebophrya sp. A25 TaxID=14... [more]
A0A835Z7X0_9STRA6.980e-4674.75Transketolase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A1Y1Z6H8_9FUNG1.950e-4474.49Transketolase n=1 Tax=Basidiobolus meristosporus C... [more]
F2U283_SALR55.410e-4472.73Transketolase n=1 Tax=Salpingoeca rosetta (strain ... [more]
A0A0J8QYS2_COCIT6.840e-4465.66Transketolase n=1 Tax=Coccidioides immitis RMSCC 3... [more]
A0A1Y1YM21_9FUNG1.910e-4370.71Transketolase n=1 Tax=Basidiobolus meristosporus C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1100contigM-pyrifera_M_contig1100:113..911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue7e-47
Seed eggNOG ortholog2880.D8LHQ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transketolase activity
EggNOG OGsCOG0021@1,KOG0523@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.5992172-CDS-M-pyrifera_M_contig1100:112..2161622815610.5992172-CDS-M-pyrifera_M_contig1100:112..216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1100 113..216 +
1692277486.3803113-CDS-M-pyrifera_M_contig1100:112..2161692277486.3803113-CDS-M-pyrifera_M_contig1100:112..216Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1100 113..216 +
1622815610.613459-CDS-M-pyrifera_M_contig1100:709..9111622815610.613459-CDS-M-pyrifera_M_contig1100:709..911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1100 710..911 +
1692277486.3921423-CDS-M-pyrifera_M_contig1100:709..9111692277486.3921423-CDS-M-pyrifera_M_contig1100:709..911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1100 710..911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1100.2092.1prot_M-pyrifera_M_contig1100.2092.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1100 113..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1100.2092.1

>prot_M-pyrifera_M_contig1100.2092.1 ID=prot_M-pyrifera_M_contig1100.2092.1|Name=mRNA_M-pyrifera_M_contig1100.2092.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MNLSPSNPQWWGRDRFVLSNGHACALQYIMLHLCGFGVTMDDLKDFRQLD
SVTPGHPENFVTAGIEVSTGPLGQGISNAVGMAMAERHLAATFNKPDFEA
S*
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mRNA from alignment at M-pyrifera_M_contig1100:113..911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1100.2092.1 ID=mRNA_M-pyrifera_M_contig1100.2092.1|Name=mRNA_M-pyrifera_M_contig1100.2092.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=799bp|location=Sequence derived from alignment at M-pyrifera_M_contig1100:113..911+ (Macrocystis pyrifera P11B4 male)
ATGAACTTGTCGCCCTCCAACCCACAGTGGTGGGGGCGCGACCGCTTCGT GCTCTCCAACGGACACGCTTGCGCCCTGCAGTACATCATGCTGCACCTTT GTGGGTAAGCTATTGATGCCTGGTAAAAAGAACCTTTATATTTCCCTATT AACATTTGGTCCTATTTACCATGGTCCCTCGCTTACATAGTAATAGCTTA CTATTAATAATAGCCGAAAAGTTTCGACAGGATAGGCTTCGTACTGCCTG GTATCTTCAGTATTGCTCCCAACGGTGGGGGCACGAGCGTTCTGTACTAG TTCCGCTCGTGTCGCTGTCACCCATTCTCTTGCCGAGCCAATAAAACCAT GGCCGAAGCATCAGGCATGCCTTAAACGAGCGCGCCATCTAAATATTTGG TTACGTACGCGATTCAAATCGGCGACCGCTCAAGAAAAACACGTACTATT TTCGTTCAAAAACACAGATGCCGTTTTTTATCTTAAGCACTACGAACTAT TACGACGGACGTGAGCACTTAATATTCGTTATGAACACGTGGTATAGGTG TTACGCTGTACTAATCGCTCAGTTCAACTCTTACGCTGTTGAAATAGGTT TGGTGTCACCATGGACGACCTGAAGGACTTCCGGCAGCTGGACTCGGTGA CCCCTGGACACCCCGAGAACTTCGTCACCGCCGGTATCGAGGTGTCCACC GGACCTCTCGGACAGGGCATCTCTAACGCGGTCGGCATGGCCATGGCCGA GAGGCACCTGGCCGCGACCTTCAACAAGCCTGACTTTGAGGCAAGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1100:113..911+

>mRNA_M-pyrifera_M_contig1100.2092.1 ID=mRNA_M-pyrifera_M_contig1100.2092.1|Name=mRNA_M-pyrifera_M_contig1100.2092.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig1100:113..911+ (Macrocystis pyrifera P11B4 male)
ATGAACTTGTCGCCCTCCAACCCACAGTGGTGGGGGCGCGACCGCTTCGT
GCTCTCCAACGGACACGCTTGCGCCCTGCAGTACATCATGCTGCACCTTT
GTGGATGAACTTGTCGCCCTCCAACCCACAGTGGTGGGGGCGCGACCGCT
TCGTGCTCTCCAACGGACACGCTTGCGCCCTGCAGTACATCATGCTGCAC
CTTTGTGGGTTTGGTGTCACCATGGACGACCTGAAGGACTTCCGGCAGCT
GGACTCGGTGACCCCTGGACACCCCGAGAACTTCGTCACCGCCGGTATCG
AGGTGTCCACCGGACCTCTCGGACAGGGCATCTCTAACGCGGTCGGCATG
GCCATGGCCGAGAGGCACCTGGCCGCGACCTTCAACAAGCCTGACTTTGA
GGCAAGTTAAGTTTGGTGTCACCATGGACGACCTGAAGGACTTCCGGCAG
CTGGACTCGGTGACCCCTGGACACCCCGAGAACTTCGTCACCGCCGGTAT
CGAGGTGTCCACCGGACCTCTCGGACAGGGCATCTCTAACGCGGTCGGCA
TGGCCATGGCCGAGAGGCACCTGGCCGCGACCTTCAACAAGCCTGACTTT
GAGGCAAGTTAA
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