mRNA_M-pyrifera_M_contig90045.20867.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90045.20867.1
Unique NamemRNA_M-pyrifera_M_contig90045.20867.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A518ABF5_9PLAN (Probable RNA 2'-phosphotransferase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A518ABF5_9PLAN)

HSP 1 Score: 150 bits (379), Expect = 1.050e-44
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYIDFP 228
            QFVA ITREGLKKMKRHHVHLHGDE+TA AVGQRRGKPVLL+IRSGEM QAGFEFFVTPNQVWLTDRVPPEYIDFP
Sbjct:  106 QFVAAITREGLKKMKRHHVHLHGDESTAQAVGQRRGKPVLLQIRSGEMHQAGFEFFVTPNQVWLTDRVPPEYIDFP 181          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A517QC58_9PLAN (RNA 2'-phosphotransferase n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QC58_9PLAN)

HSP 1 Score: 126 bits (316), Expect = 1.220e-36
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   40 MKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYIDFP 228
            MKRHHVHLHGDE+TA AVGQRRGKPVLL+IRSGEM QAGFEFFVTPNQVWLTDRVPPEYI+FP
Sbjct:    1 MKRHHVHLHGDESTAQAVGQRRGKPVLLQIRSGEMHQAGFEFFVTPNQVWLTDRVPPEYIEFP 63          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A6C4R9_9PLAN (Probable RNA 2'-phosphotransferase n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6C4R9_9PLAN)

HSP 1 Score: 121 bits (303), Expect = 3.540e-33
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYIDFP 228
            +F+  I+REGLKKM RHHVHLH DE T++AVG+RRG+PVLL++R+ EM QAG EFFVTPNQVWLT+ VP EYIDFP
Sbjct:  106 KFIEPISREGLKKMNRHHVHLHVDEQTSIAVGRRRGRPVLLQVRAREMHQAGCEFFVTPNQVWLTESVPVEYIDFP 181          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A518IHP8_9PLAN (Probable RNA 2'-phosphotransferase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IHP8_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 8.150e-32
Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYIDFP 228
            QFV  I REGLKKM+RHHVHLH DE T+L VG+RRG PVLL +RS EM +AG EFFVTPNQVWLT+ VP  YIDFP
Sbjct:  106 QFVDSIAREGLKKMQRHHVHLHVDEQTSLTVGRRRGTPVLLSVRSLEMHEAGCEFFVTPNQVWLTESVPAAYIDFP 181          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A517VU13_9PLAN (Probable RNA 2'-phosphotransferase n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VU13_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 2.380e-31
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYIDFP 228
            QFV  I   GL KMKRHHVHLH DE T+L VG RRG PVLLK+R+ EM QAGFEFFVTPN+VWLTD VP  YI+FP
Sbjct:  106 QFVGAIAHGGLMKMKRHHVHLHVDEKTSLNVGSRRGNPVLLKVRALEMHQAGFEFFVTPNEVWLTDHVPVVYIEFP 181          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A7Y2FA53_9BACT (Probable RNA 2'-phosphotransferase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2FA53_9BACT)

HSP 1 Score: 112 bits (280), Expect = 1.100e-29
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYIDFP 228
            +FVA I ++GL+KM+RHHVHLH D   A AVG RRGK VLL+IRSGEM +AG  F+VTPNQVWL D VP E+IDFP
Sbjct:  106 RFVAAIAKQGLEKMQRHHVHLHADSAVANAVGARRGKAVLLRIRSGEMHRAGHRFWVTPNQVWLVDHVPAEFIDFP 181          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A4A1P5_9BACT (Probable RNA 2'-phosphotransferase n=2 Tax=Blastopirellula marina TaxID=124 RepID=A4A1P5_9BACT)

HSP 1 Score: 110 bits (275), Expect = 6.780e-29
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYI 219
            Q VA+I   GLKKMKRHHVHLH D  TA AVGQRRGKPVLL+I +G M   G+ F+VTPNQVWLTD VPP Y+
Sbjct:  109 QSVAIILETGLKKMKRHHVHLHHDRQTASAVGQRRGKPVLLQIAAGRMHADGYSFYVTPNQVWLTDEVPPAYL 181          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A2S8GN84_9BACT (Probable RNA 2'-phosphotransferase n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GN84_9BACT)

HSP 1 Score: 109 bits (272), Expect = 1.780e-28
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    7 VAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYI 219
            VA+I   GLKKM RHHVHLH D+ TA AVGQRRGKPVLL+I SG M   G+ F+VTPNQVWLTD VPP+Y+
Sbjct:  108 VAIIMETGLKKMARHHVHLHHDQETASAVGQRRGKPVLLQIASGRMHADGYLFYVTPNQVWLTDEVPPQYV 178          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: UPI001E5C216E (RNA 2'-phosphotransferase n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E5C216E)

HSP 1 Score: 107 bits (266), Expect = 1.430e-27
Identity = 50/71 (70.42%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    7 VAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYI 219
            VA+I   GLKKM RHHVHLH D  TA AVGQRRGKPVLL++ SG M   G+ F+VTPNQVWLTD VPP YI
Sbjct:  108 VAIILETGLKKMARHHVHLHHDRETASAVGQRRGKPVLLQVASGRMHGDGYLFYVTPNQVWLTDEVPPAYI 178          
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Match: A0A5C5UX26_9BACT (Probable RNA 2'-phosphotransferase n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5UX26_9BACT)

HSP 1 Score: 105 bits (262), Expect = 6.380e-27
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    7 VAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQAGFEFFVTPNQVWLTDRVPPEYI 219
            VA+I   GLKKM RHHVHLH D+ TA AVGQRRGKP+LL+I +G M   G+ F+VTPN+VWLTD VPP+Y+
Sbjct:  108 VAIILETGLKKMARHHVHLHHDQATASAVGQRRGKPILLQIAAGRMHADGYLFYVTPNEVWLTDEVPPQYL 178          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90045.20867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518ABF5_9PLAN1.050e-4493.42Probable RNA 2'-phosphotransferase n=8 Tax=Gimesia... [more]
A0A517QC58_9PLAN1.220e-3692.06RNA 2'-phosphotransferase n=1 Tax=Gimesia panareen... [more]
A6C4R9_9PLAN3.540e-3372.37Probable RNA 2'-phosphotransferase n=8 Tax=Plancto... [more]
A0A518IHP8_9PLAN8.150e-3273.68Probable RNA 2'-phosphotransferase n=2 Tax=Gimesia... [more]
A0A517VU13_9PLAN2.380e-3172.37Probable RNA 2'-phosphotransferase n=1 Tax=Gimesia... [more]
A0A7Y2FA53_9BACT1.100e-2968.42Probable RNA 2'-phosphotransferase n=1 Tax=Pirellu... [more]
A4A1P5_9BACT6.780e-2969.86Probable RNA 2'-phosphotransferase n=2 Tax=Blastop... [more]
A0A2S8GN84_9BACT1.780e-2870.42Probable RNA 2'-phosphotransferase n=1 Tax=Blastop... [more]
UPI001E5C216E1.430e-2770.42RNA 2'-phosphotransferase n=1 Tax=unclassified Bla... [more]
A0A5C5UX26_9BACT6.380e-2766.20Probable RNA 2'-phosphotransferase n=1 Tax=Blastop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90045contigM-pyrifera_M_contig90045:2..232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score123.2
Seed ortholog evalue5.1e-26
Seed eggNOG ortholog344747.PM8797T_20338
Preferred namekptA
KEGG koko:K07559
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016740,GO:0016772
EggNOG free text desc.Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
EggNOG OGs2IZVU@203682,COG1859@1,COG1859@2
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.6888695-CDS-M-pyrifera_M_contig90045:1..2321622816811.6888695-CDS-M-pyrifera_M_contig90045:1..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90045 2..232 +
1692278192.7458644-CDS-M-pyrifera_M_contig90045:1..2321692278192.7458644-CDS-M-pyrifera_M_contig90045:1..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90045 2..232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90045.20867.1prot_M-pyrifera_M_contig90045.20867.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90045 2..232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90045.20867.1

>prot_M-pyrifera_M_contig90045.20867.1 ID=prot_M-pyrifera_M_contig90045.20867.1|Name=mRNA_M-pyrifera_M_contig90045.20867.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
QFVAVITREGLKKMKRHHVHLHGDENTALAVGQRRGKPVLLKIRSGEMSQ
AGFEFFVTPNQVWLTDRVPPEYIDFP*
back to top

mRNA from alignment at M-pyrifera_M_contig90045:2..232+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90045.20867.1 ID=mRNA_M-pyrifera_M_contig90045.20867.1|Name=mRNA_M-pyrifera_M_contig90045.20867.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig90045:2..232+ (Macrocystis pyrifera P11B4 male)
CAGTTTGTTGCAGTGATCACCCGCGAGGGGCTCAAGAAGATGAAACGCCA TCACGTGCATCTGCATGGAGATGAAAATACCGCACTGGCGGTCGGGCAGC GGCGGGGAAAACCGGTGTTGTTGAAGATCCGCTCGGGAGAGATGTCTCAG GCCGGGTTTGAATTCTTTGTGACTCCGAATCAGGTCTGGTTAACCGATCG AGTTCCACCCGAGTACATCGACTTCCCCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90045:2..232+

>mRNA_M-pyrifera_M_contig90045.20867.1 ID=mRNA_M-pyrifera_M_contig90045.20867.1|Name=mRNA_M-pyrifera_M_contig90045.20867.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig90045:2..232+ (Macrocystis pyrifera P11B4 male)
CAGTTTGTTGCAGTGATCACCCGCGAGGGGCTCAAGAAGATGAAACGCCA
TCACGTGCATCTGCATGGAGATGAAAATACCGCACTGGCGGTCGGGCAGC
GGCGGGGAAAACCGGTGTTGTTGAAGATCCGCTCGGGAGAGATGTCTCAG
GCCGGGTTTGAATTCTTTGTGACTCCGAATCAGGTCTGGTTAACCGATCG
AGTTCCACCCGAGTACATCGACTTCCCCTGACAGTTTGTTGCAGTGATCA
CCCGCGAGGGGCTCAAGAAGATGAAACGCCATCACGTGCATCTGCATGGA
GATGAAAATACCGCACTGGCGGTCGGGCAGCGGCGGGGAAAACCGGTGTT
GTTGAAGATCCGCTCGGGAGAGATGTCTCAGGCCGGGTTTGAATTCTTTG
TGACTCCGAATCAGGTCTGGTTAACCGATCGAGTTCCACCCGAGTACATC
GACTTCCCCTGA
back to top