mRNA_M-pyrifera_M_contig89506.20751.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89506.20751.1
Unique NamemRNA_M-pyrifera_M_contig89506.20751.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A6H5JI21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI21_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.170e-29
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   34 GCFQAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
            G   A D VPFFP VDISI+VLGFWFVWLFTVPSLRARKP  +EKVAL+IAFLATPVVSFAMPFVTK
Sbjct:  201 GGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTK 267          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: D8LL49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL49_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.890e-29
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   34 GCFQAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
            G   A D VPFFP VDISI+VLGFWFVWLFTVPSLRARKP  +EKVAL+IAFLATPVVSFAMPF+TK
Sbjct:  197 GGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFITK 263          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A7S2FEW9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEW9_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-23
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   46 AYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKP------REAEKVALNIAFLATPVVSFAMPFVTK 234
            AYDA+PFFP +D+S+RVLGFW +WLFT+PSLR+RKP        AEK AL+I+FL TPVV+ AMP VTK
Sbjct:   13 AYDAMPFFPHLDLSVRVLGFWGIWLFTIPSLRSRKPGGVWGMNGAEKKALDISFLLTPVVNLAMPIVTK 81          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A7S2UZ01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ01_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.810e-22
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   43 QAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
              YDAVPF   +D+S+RVLGFW +WLFTVPSLRARKP   EK ALNIAF ATP+ + A+PF TK
Sbjct:  170 MVYDAVPFVDHLDLSVRVLGFWVIWLFTVPSLRARKPAADEKTALNIAFGATPLTNLALPFFTK 233          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A6S9FX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FX91_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 5.660e-22
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   40 FQAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
            F +Y  VPF  DVDIS+RVLGFWF+WLFT+PSLRARKP   EK ALN AF  TP+ +   PFVTK
Sbjct:  161 FLSYGIVPFVEDVDISVRVLGFWFIWLFTIPSLRARKPAAGEKEALNWAFGLTPLTNLLAPFVTK 225          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A835YV04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV04_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.100e-21
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   43 QAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPRE-AEKVALNIAFLATPVVSFAMPFVTK 234
              YD VP F  VD+SIRVLGFW +WLF +PSLRARKP   AEK ALNIAF+A+P+VS A+P +TK
Sbjct:  160 MVYDRVPGFEHVDLSIRVLGFWVIWLFAIPSLRARKPTNPAEKTALNIAFVASPLVSLALPAITK 224          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A7S2FLN3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLN3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.090e-19
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   46 AYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKP------REAEKVALNIAFLATPVVSFAMPFVTK 234
            +YDA+PF P++D+++RVLGFW +WLFT+PSLR+RKP        AEK AL+IAFL TP+ +   PF TK
Sbjct:  167 SYDALPFLPNLDLAVRVLGFWGIWLFTIPSLRSRKPGGVWGMSNAEKNALDIAFLVTPLANLLAPFATK 235          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A7S3ERS1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ERS1_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 4.500e-19
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   34 GCFQAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
            G   A+DA P    +DIS+R LGFW  WLFT+PSLRAR+P+  EK ALNIAFL +P+++FA PF TK
Sbjct:   40 GGVAAFDAFPTV-TIDISLRALGFWSYWLFTIPSLRARRPKGWEKKALNIAFLGSPLLTFAAPFATK 105          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: M2VTY8_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTY8_GALSU)

HSP 1 Score: 84.7 bits (208), Expect = 1.670e-18
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   31 GGCFQAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
            GG   A +  PF  +V +  R LGFW VWLFT+PSLRARKP  AEK ALN+AFLA PV +  +PFV K
Sbjct:  102 GGLLAA-NKFPFVQEVPLVFRALGFWMVWLFTIPSLRARKPNMAEKNALNVAFLACPVANVVIPFVNK 168          
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Match: A0A7S2TND9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TND9_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 4.110e-18
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   61 PFFPDVDISIRVLGFWFVWLFTVPSLRARKPREAEKVALNIAFLATPVVSFAMPFVTK 234
            P +PD+ I+ + LGFW +WLFT+PSLRARKP E EK ALN+AFLATP+++ A+P V K
Sbjct:  187 PGYPDLPIAAQALGFWTIWLFTIPSLRARKPAEVEKQALNVAFLATPLLNLAIPSVAK 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89506.20751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI21_9PHAE1.170e-2983.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL49_ECTSI1.890e-2982.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FEW9_9STRA1.720e-2365.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UZ01_9STRA1.810e-2267.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9FX91_HETAK5.660e-2266.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YV04_9STRA4.100e-2166.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FLN3_9STRA4.090e-1956.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ERS1_9EUKA4.500e-1959.70Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
M2VTY8_GALSU1.670e-1858.82Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7S2TND9_9EUKA4.110e-1862.07Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89506contigM-pyrifera_M_contig89506:506..739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D8LL49
Hectar predicted targeting categoryother localisation
EggNOG OGs2BZA5@1,2QSK6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.5975747-CDS-M-pyrifera_M_contig89506:505..7391622816805.5975747-CDS-M-pyrifera_M_contig89506:505..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89506 506..739 -
1692278189.147242-CDS-M-pyrifera_M_contig89506:505..7391692278189.147242-CDS-M-pyrifera_M_contig89506:505..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89506 506..739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89506.20751.1prot_M-pyrifera_M_contig89506.20751.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89506 506..739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89506.20751.1

>prot_M-pyrifera_M_contig89506.20751.1 ID=prot_M-pyrifera_M_contig89506.20751.1|Name=mRNA_M-pyrifera_M_contig89506.20751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
ATSPFYLYAGGGCFQAYDAVPFFPDVDISIRVLGFWFVWLFTVPSLRARK
PREAEKVALNIAFLATPVVSFAMPFVTK
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mRNA from alignment at M-pyrifera_M_contig89506:506..739-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89506.20751.1 ID=mRNA_M-pyrifera_M_contig89506.20751.1|Name=mRNA_M-pyrifera_M_contig89506.20751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig89506:506..739- (Macrocystis pyrifera P11B4 male)
GCTACCTCACCTTTCTATCTATATGCGGGTGGCGGCTGTTTTCAGGCGTA CGACGCCGTTCCGTTCTTCCCTGACGTGGATATCTCAATCCGAGTCCTGG GCTTCTGGTTCGTCTGGCTTTTCACGGTGCCCTCTCTTCGGGCAAGGAAG CCGAGGGAGGCGGAGAAAGTGGCGCTGAACATCGCCTTTCTCGCCACCCC CGTGGTCAGCTTCGCCATGCCCTTCGTCACCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89506:506..739-

>mRNA_M-pyrifera_M_contig89506.20751.1 ID=mRNA_M-pyrifera_M_contig89506.20751.1|Name=mRNA_M-pyrifera_M_contig89506.20751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig89506:506..739- (Macrocystis pyrifera P11B4 male)
GCTACCTCACCTTTCTATCTATATGCGGGTGGCGGCTGTTTTCAGGCGTA
CGACGCCGTTCCGTTCTTCCCTGACGTGGATATCTCAATCCGAGTCCTGG
GCTTCTGGTTCGTCTGGCTTTTCACGGTGCCCTCTCTTCGGGCAAGGAAG
CCGAGGGAGGCGGAGAAAGTGGCGCTGAACATCGCCTTTCTCGCCACCCC
CGTGGTCAGCTTCGCCATGCCCTTCGTCACCAAGGCTACCTCACCTTTCT
ATCTATATGCGGGTGGCGGCTGTTTTCAGGCGTACGACGCCGTTCCGTTC
TTCCCTGACGTGGATATCTCAATCCGAGTCCTGGGCTTCTGGTTCGTCTG
GCTTTTCACGGTGCCCTCTCTTCGGGCAAGGAAGCCGAGGGAGGCGGAGA
AAGTGGCGCTGAACATCGCCTTTCTCGCCACCCCCGTGGTCAGCTTCGCC
ATGCCCTTCGTCACCAAG
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