mRNA_M-pyrifera_M_contig88164.20477.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig88164.20477.1
Unique Name	mRNA_M-pyrifera_M_contig88164.20477.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.850e-20
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query:    1 REVDGMEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRPPSFICK 150
            REVDGMEFEH+SVALDLRFIPD VSF  R VRD+SSSVPSSY+PPSFICK
Sbjct:  449 REVDGMEFEHSSVALDLRFIPDEVSFEGRQVRDKSSSVPSSYQPPSFICK 498

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A7S4ELK0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ELK0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1

Query:    1 REVDGMEFEHTSVALDLRFIP-DGVS--FAERTVRDRSSSVPSSYRPPSFI 144
            REVDGMEFEH+S A+DLR +P + V    A+R +RD+++S+P  Y PP FI
Sbjct:  353 REVDGMEFEHSSTAIDLRTLPAEAVESVIADRPMRDQATSIPGRYEPPDFI 403

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A448Z1P3_9STRA (NUC153 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1

Query:    1 REVDGMEFEHTSVALDLRFIPDGVS---FAERTVRDRSSSVPSSYRPPSFI 144
            REVDGMEFEH+S A+DLR +P+        +R +RD ++S+P  Y PP FI
Sbjct:  346 REVDGMEFEHSSTAIDLRTLPEEALASVITDRPMRDEATSIPGKYEPPEFI 396

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: UPI001D049B9A (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D049B9A)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1

Query:    4 EVDGMEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRP 132
            E DG EFE TSV LDLRFIPD +SF +R V+++ +S+P+ Y P
Sbjct:  408 ECDGFEFESTSVVLDLRFIPDDISFEKRQVKNQCTSMPADYTP 450

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A1E7F590_9STRA (NUC153 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F590_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1

Query:    1 REVDGMEFEHTSVALDLRFIP-DGVS--FAERTVRDRSSSVPSSYRPPSFI 144
            REVDGMEFEH+S A+DLR +P D +    A R +RD ++S+P  Y PP F+
Sbjct:  348 REVDGMEFEHSSTAIDLRTLPKDDLESVIANRPMRDEATSIPGKYEPPEFV 398

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A1Y1I6T7_KLENI (NUC153 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6T7_KLENI)

HSP 1 Score: 56.6 bits (135), Expect = 4.980e-8
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1

Query:    4 EVDGMEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRPPSF 141
            + DG+EFE +S  LDLRF+PD +SF ER  RD +++VPS Y  P F
Sbjct:  346 QCDGLEFEKSSNKLDLRFVPDAMSFDERPKRDTATAVPSDYAAPDF 391

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A7S3LT15_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LT15_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.800e-8
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1

Query:    4 EVDGMEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRPPSFICK 150
            + DGMEFEH+SV  D+RF+PD V   +R VRD ++ V   Y+PP FI +
Sbjct:  185 QCDGMEFEHSSVLFDMRFVPDEVEM-DRPVRDSANEVGDDYQPPEFITR 232

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A7S2Y126_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y126_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.820e-8
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1

Query:    1 REVDGMEFEHTSVALDLRFIPDGV---SFAERTVRDRSSSVPSSYRPPSFI 144
            +EVDGMEFEH+S A+D+R IP G    +   R + D+++++PS+Y PP F+
Sbjct:  422 KEVDGMEFEHSSAAIDVRAIPPGELENAIQNRPLHDQATNIPSNYTPPDFV 472

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A8J9RAM1_9CHLO (Probable pre-rRNA-processing protein ESF1 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAM1_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 6.830e-8
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1

Query:    1 REVDGMEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRPPSFI 144
            +E D +EFE T   LD+RF+PD +SF +R VRD ++ VP+ Y PP F 
Sbjct:  356 KECDDLEFELTGNKLDVRFVPDVLSFEDRQVRDSATDVPADYEPPPFF 403

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BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Match: A0A7S3SGF1_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SGF1_EMIHU)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1

Query:    4 EVDGMEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRPPSF 141
            E DG EFE+++++LDLRFIPD +SF ERT RD ++++P  Y  PSF
Sbjct:  283 ECDGAEFEYSAMSLDLRFIPDEMSF-ERTPRDAATTLPPRYSAPSF 327

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig88164.20477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LFV7_ECTSI	5.850e-20	86.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S4ELK0_9STRA	1.040e-8	54.90	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A448Z1P3_9STRA	1.420e-8	50.98	NUC153 domain-containing protein n=1 Tax=Pseudo-ni...	[more]
UPI001D049B9A	1.950e-8	58.14	uncharacterized protein n=1 Tax=Naegleria lovanien...	[more]
A0A1E7F590_9STRA	2.660e-8	52.94	NUC153 domain-containing protein n=1 Tax=Fragilari...	[more]
A0A1Y1I6T7_KLENI	4.980e-8	54.35	NUC153 domain-containing protein n=1 Tax=Klebsormi...	[more]
A0A7S3LT15_9STRA	6.800e-8	51.02	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]
A0A7S2Y126_9STRA	6.820e-8	47.06	Hypothetical protein n=2 Tax=Amphiprora paludosa T...	[more]
A0A8J9RAM1_9CHLO	6.830e-8	50.00	Probable pre-rRNA-processing protein ESF1 at N-ter...	[more]
A0A7S3SGF1_EMIHU	1.740e-7	56.52	Hypothetical protein (Fragment) n=1 Tax=Emiliania ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig88164	contig	M-pyrifera_M_contig88164:520..669 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	80.5
Seed ortholog evalue	2.2e-13
Seed eggNOG ortholog	2880.D8LFV7
Preferred name	ESF1
KEGG ko	ko:K22197
KEGG Pathway	ko05225,map05225
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.	rRNA processing
EggNOG OGs	COG5638@1,KOG2318@2759
COG Functional cat.	A
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001
Exons	1
Model size	150
Cds size	135
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816791.1033072-CDS-M-pyrifera_M_contig88164:519..654	1622816791.1033072-CDS-M-pyrifera_M_contig88164:519..654	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig88164 520..654 -
1692278180.412265-CDS-M-pyrifera_M_contig88164:519..654	1692278180.412265-CDS-M-pyrifera_M_contig88164:519..654	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig88164 520..654 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816791.1144395-UTR-M-pyrifera_M_contig88164:654..669	1622816791.1144395-UTR-M-pyrifera_M_contig88164:654..669	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig88164 655..669 -
1692278180.4241178-UTR-M-pyrifera_M_contig88164:654..669	1692278180.4241178-UTR-M-pyrifera_M_contig88164:654..669	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig88164 655..669 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig88164.20477.1	prot_M-pyrifera_M_contig88164.20477.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig88164 520..654 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig88164:520..669-
coding sequence from alignment at M-pyrifera_M_contig88164:520..669-

protein sequence of mRNA_M-pyrifera_M_contig88164.20477.1

>prot_M-pyrifera_M_contig88164.20477.1 ID=prot_M-pyrifera_M_contig88164.20477.1|Name=mRNA_M-pyrifera_M_contig88164.20477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MEFEHTSVALDLRFIPDGVSFAERTVRDRSSSVPSSYRPPSFICK

mRNA from alignment at M-pyrifera_M_contig88164:520..669-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig88164.20477.1 ID=mRNA_M-pyrifera_M_contig88164.20477.1|Name=mRNA_M-pyrifera_M_contig88164.20477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig88164:520..669- (Macrocystis pyrifera P11B4 male)
AGGGAGGTGGACGGGATGGAGTTCGAGCATACTTCGGTGGCGTTAGACCT
TCGGTTCATCCCCGACGGCGTTTCGTTCGCGGAGCGGACGGTGCGGGACC
GTAGCTCGTCGGTTCCTTCGTCGTACCGGCCGCCCTCCTTCATCTGCAAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88164:520..669-

>mRNA_M-pyrifera_M_contig88164.20477.1 ID=mRNA_M-pyrifera_M_contig88164.20477.1|Name=mRNA_M-pyrifera_M_contig88164.20477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig88164:520..669- (Macrocystis pyrifera P11B4 male)
ATGGAGTTCGAGCATACTTCGGTGGCGTTAGACCTTCGGTTCATCCCCGA
CGGCGTTTCGTTCGCGGAGCGGACGGTGCGGGACCGTAGCTCGTCGGTTC
CTTCGTCGTACCGGCCGCCCTCCTTCATCTGCAAGATGGAGTTCGAGCAT
ACTTCGGTGGCGTTAGACCTTCGGTTCATCCCCGACGGCGTTTCGTTCGC
GGAGCGGACGGTGCGGGACCGTAGCTCGTCGGTTCCTTCGTCGTACCGGC
CGCCCTCCTTCATCTGCAAG