mRNA_M-pyrifera_M_contig109809.2046.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109809.2046.1
Unique NamemRNA_M-pyrifera_M_contig109809.2046.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: A0A803N485_CHEQI (Uncharacterized protein n=5 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803N485_CHEQI)

HSP 1 Score: 72.4 bits (176), Expect = 6.230e-14
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    4 VPIPDSRGEATLVQKCGFCGERITVDMPSQGVGALVADSDEAEGEQMAVV--EVRGGEIESWS-AGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            VPIP SRG+A LVQKC FCG   T+ M  +    L  D  EA G+ + ++  + RG E   +S  GD WK+V   G V E+  DL DGDWAD+DE      S+  + +
Sbjct:   33 VPIPKSRGQANLVQKCKFCGREGTITMIPKSGRYLTGDDCEA-GKFVPLMSFDCRGLEPVDYSFGGDQWKIVTTAGTVFENV-DLSDGDWADYDEKKKMPTSVSNLQS 138          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: A0A0K9RW51_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RW51_SPIOL)

HSP 1 Score: 72.8 bits (177), Expect = 7.300e-14
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    4 VPIPDSRGEATLVQKCGFCGERITVDM-PSQGVGALVADSDEAEGEQMAVVEVRGGEIESWS-AGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            VPIP SRG A LVQKC  CG   T+ M P  G      D +E +   M   + RG E  ++S  GD WK+V   G V E+  DL DGDWAD+DE      SI  + +
Sbjct:   56 VPIPKSRGNANLVQKCKLCGRDGTITMIPKSGRPLTGDDCEEGKYAPMMSFDCRGLEPVAYSFGGDQWKIVTTAGTVFENV-DLSDGDWADYDEKGKMPTSISNLQS 161          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: A0A812PGA2_9DINO (CZIB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PGA2_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-11
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   19 SRGEATLVQKCGFCGERITVDMPSQGVGALVADSDEAEGEQMAVVEVRGGEIESWSAGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            SRG A L QKC FCG +    +   G     A++   + + +  +E RG E  SW A  G+ V    GG +ED  D  +G+WAD+ EDTD A+++L ++T
Sbjct:   58 SRGTAHLQQKCSFCGCKFNATL---GAAREWAEAGGLDSQTLVDIECRGCEPVSWVAAQGFTVKGAEGGEMEDV-DFSEGEWADYVEDTDEALTVLSVTT 153          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: A0A0J8CWI0_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CWI0_BETVV)

HSP 1 Score: 63.9 bits (154), Expect = 1.920e-10
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    4 VPIPDSRGEATLVQKCGFCGERITVDM-PSQGVGALVADSDEAEGEQMAVVEVRGGEIESWSAG-DGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            VP+P SRG+A LVQKC FCG    + M P  G     AD +  +   +   + RG E   +S G D WKV    G V E+  +L  GDW D+DE+    VS+  + +
Sbjct:   56 VPLPKSRGQANLVQKCKFCGREGNITMIPKFGRPLTGADCEAGQYAPLMSFDCRGLEPLEYSFGCDQWKVETTAGTVFENV-NLSGGDWVDYDENGSMPVSVDNLKS 161          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: A0A1I7S2T4_BURXY ((pine wood nematode) hypothetical protein n=2 Tax=Bilateria TaxID=33213 RepID=A0A1I7S2T4_BURXY)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-9
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    4 VPIPDSRGEATLVQKCGFCGERITVDMPSQGVGALVADSDEAEGEQMAVVEVRGGEIESWSAGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            V IP+SRG A  V+KCGFC +  TV++    + A V +SDE     +   E RG E   +     W+      G      DL D  WADFDE  D  V+I+++ +
Sbjct:   53 VEIPNSRGTANYVEKCGFCNKTATVNIVPDSIKA-VKESDEFT--TICKFETRGTEPVEFEISGQWRCEGTESGTKFSEVDLSDA-WADFDEKADAPVTIMDVES 153          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: A0A0R3U1X7_MESCO (Uncharacterized protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3U1X7_MESCO)

HSP 1 Score: 59.7 bits (143), Expect = 7.760e-9
Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 1
Query:    7 PIPDSRGEATLVQKCGFCGERITVDMPSQGVGALVADSDEAEGEQMAVV---EVRGGEIESWSAGDGWKVVAKGGGV-LEDTADLGDGDWADFDEDTDTAVSILEIST 318
            PI  SRG   L  KC FCG   + D+    V A      E E E+M  +   E RG E  ++S   GW+VV+      + D  DLG G+WAD+DE  D  V I ++++
Sbjct:   53 PIKGSRGLTNLKLKCKFCGRENSADIVEGSVKAY----HEEESEKMRPIVRFECRGLEPLTFSPRVGWRVVSSSNSATVFDDVDLGQGEWADYDEAGDQCVEIFDVTS 156          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: F2UMI0_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMI0_SALR5)

HSP 1 Score: 53.5 bits (127), Expect = 1.540e-6
Identity = 35/107 (32.71%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    7 PIPDSRGEATLVQKCGFC---GERITVDMPSQGVGALVADSDEAEGEQMAVVEVRGGEIESWSAGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            P+  SRG A  V K       G  +T +   +G    + + D  +   +A  + RG +I  +   DG+ V   GG V +D  DL + +WAD+DE+ D +VSI+E+ T
Sbjct:   51 PLEGSRGTANFVMKWSKSDRKGSSVTKE-EKKGGARFITEDDVGKWVPVAAFDCRGADIIKYHPRDGFTVTTTGGAVFKDV-DLSE-EWADYDEENDLSVSIMEVET 154          
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Match: W7TRG8_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRG8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.130e-5
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  118 SDEAEGEQMAVVEVRGGEIESWSAGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVSILEIST 318
            SD    + +A +E RG ++E+W   D + VV++GG   E  A+L DGD+ ++DE+ + AVS+LE++T
Sbjct:   81 SDSGAFQTVARIEARGVDVEAWRVRDDFVVVSEGGTRFE-AANLVDGDYTEYDEEHNQAVSVLEVAT 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109809.2046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A803N485_CHEQI6.230e-1442.59Uncharacterized protein n=5 Tax=Chenopodium quinoa... [more]
A0A0K9RW51_SPIOL7.300e-1442.99Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A812PGA2_9DINO1.220e-1138.00CZIB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A0J8CWI0_BETVV1.920e-1038.32Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A1I7S2T4_BURXY1.640e-936.19(pine wood nematode) hypothetical protein n=2 Tax=... [more]
A0A0R3U1X7_MESCO7.760e-937.04Uncharacterized protein n=2 Tax=Mesocestoides cort... [more]
F2UMI0_SALR51.540e-632.71Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
W7TRG8_9STRA2.130e-540.30Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109809contigM-pyrifera_M_contig109809:4..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog5039.XP_002623062.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.DUF866 domain-containing protein
EggNOG OGs20GW5@147545,39TNN@33154,3B399@33183,3P2GP@4751,3QU4F@4890,KOG1296@1,KOG1296@2759
COG Functional cat.S
Best tax levelOnygenales
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.414276-CDS-M-pyrifera_M_contig109809:3..3211622815608.414276-CDS-M-pyrifera_M_contig109809:3..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109809 4..321 +
1692277485.4363832-CDS-M-pyrifera_M_contig109809:3..3211692277485.4363832-CDS-M-pyrifera_M_contig109809:3..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109809 4..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109809.2046.1prot_M-pyrifera_M_contig109809.2046.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109809 4..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109809.2046.1

>prot_M-pyrifera_M_contig109809.2046.1 ID=prot_M-pyrifera_M_contig109809.2046.1|Name=mRNA_M-pyrifera_M_contig109809.2046.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
RVPIPDSRGEATLVQKCGFCGERITVDMPSQGVGALVADSDEAEGEQMAV
VEVRGGEIESWSAGDGWKVVAKGGGVLEDTADLGDGDWADFDEDTDTAVS
ILEIST
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mRNA from alignment at M-pyrifera_M_contig109809:4..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109809.2046.1 ID=mRNA_M-pyrifera_M_contig109809.2046.1|Name=mRNA_M-pyrifera_M_contig109809.2046.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig109809:4..321+ (Macrocystis pyrifera P11B4 male)
CGTGTTCCAATCCCAGATTCTCGTGGAGAGGCAACTTTGGTGCAAAAATG TGGATTTTGCGGCGAGAGGATCACGGTAGATATGCCTTCGCAAGGGGTTG GAGCATTGGTGGCAGATTCGGATGAGGCAGAGGGAGAACAGATGGCGGTT GTGGAGGTGAGAGGTGGAGAGATTGAATCTTGGTCTGCTGGAGATGGGTG GAAGGTTGTAGCCAAAGGAGGTGGGGTGTTGGAAGACACGGCAGATCTCG GGGACGGAGATTGGGCTGATTTTGACGAAGATACGGACACGGCAGTTTCT ATTCTTGAAATTTCCACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109809:4..321+

>mRNA_M-pyrifera_M_contig109809.2046.1 ID=mRNA_M-pyrifera_M_contig109809.2046.1|Name=mRNA_M-pyrifera_M_contig109809.2046.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig109809:4..321+ (Macrocystis pyrifera P11B4 male)
CGTGTTCCAATCCCAGATTCTCGTGGAGAGGCAACTTTGGTGCAAAAATG
TGGATTTTGCGGCGAGAGGATCACGGTAGATATGCCTTCGCAAGGGGTTG
GAGCATTGGTGGCAGATTCGGATGAGGCAGAGGGAGAACAGATGGCGGTT
GTGGAGGTGAGAGGTGGAGAGATTGAATCTTGGTCTGCTGGAGATGGGTG
GAAGGTTGTAGCCAAAGGAGGTGGGGTGTTGGAAGACACGGCAGATCTCG
GGGACGGAGATTGGGCTGATTTTGACGAAGATACGGACACGGCAGTTTCT
ATTCTTGAAATTTCCACACGTGTTCCAATCCCAGATTCTCGTGGAGAGGC
AACTTTGGTGCAAAAATGTGGATTTTGCGGCGAGAGGATCACGGTAGATA
TGCCTTCGCAAGGGGTTGGAGCATTGGTGGCAGATTCGGATGAGGCAGAG
GGAGAACAGATGGCGGTTGTGGAGGTGAGAGGTGGAGAGATTGAATCTTG
GTCTGCTGGAGATGGGTGGAAGGTTGTAGCCAAAGGAGGTGGGGTGTTGG
AAGACACGGCAGATCTCGGGGACGGAGATTGGGCTGATTTTGACGAAGAT
ACGGACACGGCAGTTTCTATTCTTGAAATTTCCACA
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