mRNA_M-pyrifera_M_contig88025.20448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88025.20448.1
Unique NamemRNA_M-pyrifera_M_contig88025.20448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: J9FV51_9SPIT (DNA topoisomerase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9FV51_9SPIT)

HSP 1 Score: 217 bits (552), Expect = 1.260e-61
Identity = 103/217 (47.47%), Postives = 147/217 (67.74%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFKDGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVR 651
            ++D+AHPPIHP K A++  L G  EW +Y  V R FLA  S+DA G ET + V  GGE+F   GL++ E+N+L+VFPYE+W+   LP L  G + +    +L++ D ETRPP LLTE++LI +MD+ GIGTDATI +HIK +Q+R+Y +K G    PS  G  L  AYE +G+ L KPYLR +ME+D + +A+G K    V+R+CV  M ++++ V+
Sbjct:  387 QDDKAHPPIHPVKFASKQDL-GFDEWRVYELVARHFLATISKDAIGAETCIEVSCGGEQFQTKGLIIEEQNWLEVFPYEKWSDSYLPQLNKGESFEVNNQNLKIQDGETRPPPLLTEADLITKMDQNGIGTDATIHEHIKHIQERQYAYKQGQTFLPSPLGTNLVEAYEHLGIELYKPYLRAQMEKDMKMIAEGIKSKDQVLRDCVNEMRRIFNRVK 602          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: A0A1V9Z583_9STRA (DNA topoisomerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z583_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.560e-60
Identity = 106/231 (45.89%), Postives = 153/231 (66.23%), Query Frame = 1
Query:    4 NDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFK--DGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIIDSVKAF 690
            +DQAHPPIHPTK    AA+  + E  +Y +V R FLA CS+DA+G++T++ +    E F A GL++LERN+LD++ YE+W A ++P  E G T  P  T L L   ET PP LLTES+LIA+MD+ GIGTDATIA+HI T+  R+Y  K  + +   P+  G+ L + Y+R+G  L KP LR  MERDC A+A G+K    VVR+C+  M  +++ V AR +++ ++ + +
Sbjct:  383 DDQAHPPIHPTKSVALAAITNDVERRVYEFVVRHFLACCSRDARGSQTSVAMRLADETFGAKGLMILERNYLDIYKYEKWAATTIPVYERGDTFVP--TTLLLKAGETAPPPLLTESDLIAKMDQHGIGTDATIAEHINTILKRQYAVKVNNDTQFQPTELGLALVQTYDRMGYQLAKPDLRAAMERDCNAIAQGQKTCEQVVRDCMSQMKTIFESVVARSNVLDETFQGY 611          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: A0A7J8BJ70_MOLMO (DNA topoisomerase n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8BJ70_MOLMO)

HSP 1 Score: 197 bits (500), Expect = 4.770e-58
Identity = 102/215 (47.44%), Postives = 147/215 (68.37%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYV--FKDGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVY 639
            K+DQAHPPIHPTK  +  +L+G+ E  LY ++ R FLA CSQDA+G ETT+ +D   ERF A GLV+L RN+LDV+PY+RW+ ++LP  E G+   P+   +++ D ET PP LLTE++LIA M++ GIGTDAT A+HI+T++ R YV    D  +L P   GMGL   Y+ +G A+ KP LR E+E + + + +G+K+   V+R+ +    QV+
Sbjct:  102 KSDQAHPPIHPTKYTS--SLQGD-EQRLYEFIVRHFLACCSQDAQGQETTVEIDISQERFVAHGLVILARNYLDVYPYDRWSDKTLPVYERGSHFQPST--VEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAEHIETIKARMYVGLTPDKRFL-PGHLGMGLVEGYDSMGHAMSKPDLRAELEANLKLICEGKKEKSVVLRQQIQKYKQVF 310          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: A0A4C1VAH6_EUMVA (DNA topoisomerase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1VAH6_EUMVA)

HSP 1 Score: 205 bits (522), Expect = 4.980e-58
Identity = 104/230 (45.22%), Postives = 156/230 (67.83%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYV-FKDGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIIDSVKA 687
            K+D+AHPPIHPTK      L G  E  +Y ++ R FLA CS+DA+G ET++T+D  GE+FSATGL++  RN+LDV+PYE+W+++ +   E G T DP  T +++ +  T PP LLTE++LIA M++ GIGTDAT A+HI+T+++R YV   +  +  P   GMGL   Y+ +G+ + KP+LR ++E D +A+++GRKQ  AV+ E +    +VY  V A  ++ ID+  A
Sbjct:  253 KSDKAHPPIHPTKYTNN--LTGN-EQRIYEFIVRSFLACCSKDAQGQETSVTIDIAGEKFSATGLMITARNYLDVYPYEKWSSKEIHIYENGQTFDP--TVIEMVEGSTSPPNLLTEADLIALMEKHGIGTDATHAEHIETIKNRSYVALANAVHFVPGLLGMGLVEGYDAMGLHISKPHLRAQLEADLKAISEGRKQPQAVLAEQIAKYKEVYITVTAE-ALKIDNALA 476          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: T1I0Z0_RHOPR (DNA topoisomerase (Fragment) n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1I0Z0_RHOPR)

HSP 1 Score: 204 bits (519), Expect = 8.090e-58
Identity = 98/227 (43.17%), Postives = 154/227 (67.84%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFKDGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIIDSV 681
            K+DQ+HPPIHP K     +L+G  E  +Y ++ R FLA  S+DAKG+ET + ++  GE F A+GL++LERN+LDV+PYE WN++++   E+G T  P   D++  +S+T PP LLTE++LIA M++ GIGTDAT A+HI+T++ R YV  +G+Y  PS+ GMGL   Y+ +G A+ KP+LR E+E D + + DG ++   V+RE +     ++   + + + I +++
Sbjct:  409 KSDQSHPPIHPIKYTN--SLQGN-EAKMYEFIVRHFLACVSKDAKGHETNVLIEINGEEFQASGLMILERNYLDVYPYENWNSKNIHYYEVGQTFHPTILDIE--ESQTSPPNLLTEADLIALMEKHGIGTDATHAEHIETIKTRSYVGLEGNYFVPSAIGMGLVEGYDTMGFAMSKPHLRAELEADLKRICDGVRRPEDVLREQIDKYRNLFQQAKLQVNKIDEAI 630          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: A0A067D7B1_SAPPC (DNA topoisomerase n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7B1_SAPPC)

HSP 1 Score: 207 bits (526), Expect = 8.400e-58
Identity = 104/231 (45.02%), Postives = 146/231 (63.20%), Query Frame = 1
Query:    4 NDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFK--DGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIIDSVKAF 690
            +DQAHPPIHPTK    ++L  + E  +Y  V R FLA CS DA+G++T +T+    E F+A+GL++L RN+LD++ YE+W A  +P  E G    P  T L L   ET PP LLTES+LIA+MD  GIGTDATIA+HI T+  R+Y  K  + +   P+  G+ L + Y+R+G  L KP LR  +ERDC A+A G+K    VVR C+  M  +Y  V AR  ++ ++ + +
Sbjct:  383 DDQAHPPIHPTKCVPLSSLNNDVERRVYELVVRHFLACCSMDARGSQTNVTMTLASETFTASGLMILARNYLDIYVYEKWAATVIPVYERGDRFVP--TTLLLKRGETAPPPLLTESDLIAKMDTHGIGTDATIAEHINTILKRQYAIKVNNNTQFKPTELGLALVQTYDRMGYQLAKPDLRAAVERDCNAIAQGQKSCDQVVRSCMDQMRTIYQNVVARSGVLDETFQGY 611          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: G4TIC8_SERID (DNA topoisomerase n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TIC8_SERID)

HSP 1 Score: 202 bits (514), Expect = 9.040e-58
Identity = 111/235 (47.23%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFK----DGSYLTPSSFGMGLYRAYERIGV--ALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIIDSVKA 687
            KND+AHPPIHPT  A   A     E  +Y YVTRRFLA+CS+DA+G +TT+TV   GE FSA+GL+VLERN+L+VFPY++W++  LP  E G    P  T  +L + ET  P+LLTE++L++ MD+ GIGTDATIA HI T+ +R+YV +    +  YL PS+ G+GL   Y +IG+  +L KP LRRE ER    V D  K    +++E +    +V+ L R   ++II+  +A
Sbjct:  351 KNDKAHPPIHPTAYAGNLA---GNEKKVYEYVTRRFLASCSKDAEGFQTTITVAVNGEEFSASGLLVLERNYLEVFPYDKWSSHELPPFEEGEEFMP--TICELREGETTRPSLLTEADLVSLMDKNGIGTDATIAQHINTIVEREYVMERLEGNTKYLVPSTLGVGLVHGYNQIGLEKSLSKPQLRRETERSMVQVCDRIKTKDDMLQESIEQYKEVFILARREFNLIINKDQA 580          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: T1J1V7_STRMM (DNA topoisomerase n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J1V7_STRMM)

HSP 1 Score: 206 bits (523), Expect = 1.270e-57
Identity = 106/226 (46.90%), Postives = 149/226 (65.93%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYV-FKDGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIID 675
            K D AHPPIHPTK A +  L+G+ E  +Y +V R FLA CS+DAKG+ETT+ +D   ERF+A GL++LERN+LDV+PYE W+A+ +P  E+  T  P+  D+     ET  P LLTE++LIA MD+ GIGTDAT A+HI+T++ R YV   +     P   G GL   Y+ +G A+ KP+LR E+E D Q + DG K A AV+ E +G    V++   A++++ +D
Sbjct:  380 KTDNAHPPIHPTKYADQ--LQGD-EKCVYEFVVRHFLACCSKDAKGHETTIEIDVAQERFTANGLIILERNYLDVYPYESWSAKVIPHFEMNRTFQPSAIDM--VGGETSSPPLLTEADLIALMDKHGIGTDATHAEHIETIKQRSYVGLNEHKAFLPGELGFGLVEGYDSMGFAMSKPHLRAELESDLQKICDGTKAAEAVLTEQIGKYRSVFEEA-AKQAVKLD 599          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: A0A0C3PNK5_PISTI (DNA topoisomerase n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3PNK5_PISTI)

HSP 1 Score: 205 bits (521), Expect = 2.220e-57
Identity = 108/235 (45.96%), Postives = 157/235 (66.81%), Query Frame = 1
Query:    4 NDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFK--DGS--YLTPSSFGMGLYRAYERIGV--ALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYDLVRARRSIIIDSVKAF 690
            ND+AHPPIHPT  A    L G+ +  +Y ++TRRFLA+CS+DA+G+ETT+ V+ GGE F ATGL+VL+RN+LDV+PY++WNA+ +P    G   +P  T  ++ + +T PP LLTE++L+A MD+ GIGTDATIA HI+T+ DR+YV +  DG+  +L PS+ GMGL   Y  IG   +L KP LRRE ER    V +G K    ++ E +    ++Y + +     ++ SV+ +
Sbjct:  379 NDKAHPPIHPTAHA--GNLTGDDK-KVYDFITRRFLASCSKDAEGSETTVEVEYGGEEFYATGLIVLQRNYLDVYPYDKWNAKEIPNFRDGEEFEP--TSCEIKEGKTTPPPLLTEADLVALMDKNGIGTDATIAQHIQTIIDREYVIERMDGTTKHLLPSTLGMGLVEGYNEIGFDRSLSKPQLRRETERSMVQVCEGTKSKDQMLLESIEQYREMYIIAKREFGKVLSSVRRY 608          
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.410e-57
Identity = 112/230 (48.70%), Postives = 147/230 (63.91%), Query Frame = 1
Query:    1 KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETTLTVDAGGERFSATGLVVLERNFLDVFP-YERWNARSLPA--LELGATLDPAQTDLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFKDGSY-------------LTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPAVVRECVGSMHQVYD 642
            K+DQAHPPIHPTKLA    L+G  E  +Y  V R FLA CS DAKG  T +TV+ GGE F+ATG+V+LERN+LDV+  +E+W+A +LPA  L++GA   P  T L L    T+PP LL+E++LI+RMD +GIGTDATIA HIKT+  RKYV                     P++ G+GL   YE IG  L KP LR EMER+C+ VA G +    +V+ C+  M + ++
Sbjct:  404 KDDQAHPPIHPTKLAAPQELKGTDEQKVYELVVRHFLACCSDDAKGKRTKVTVEMGGEEFTATGIVILERNWLDVYNGWEKWHASTLPANVLQVGAAFVP--TSLTLETGRTQPPPLLSEADLISRMDEKGIGTDATIAQHIKTILQRKYVTXXXXXXXXXXXXXXLQRRFQPTNLGLGLVEGYEEIGYQLTKPELRAEMERECKRVARGERGRTEMVQACLLKMKECFE 631          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88025.20448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J9FV51_9SPIT1.260e-6147.47DNA topoisomerase n=1 Tax=Oxytricha trifallax TaxI... [more]
A0A1V9Z583_9STRA1.560e-6045.89DNA topoisomerase n=1 Tax=Achlya hypogyna TaxID=12... [more]
A0A7J8BJ70_MOLMO4.770e-5847.44DNA topoisomerase n=1 Tax=Molossus molossus TaxID=... [more]
A0A4C1VAH6_EUMVA4.980e-5845.22DNA topoisomerase n=1 Tax=Eumeta variegata TaxID=1... [more]
T1I0Z0_RHOPR8.090e-5843.17DNA topoisomerase (Fragment) n=1 Tax=Rhodnius prol... [more]
A0A067D7B1_SAPPC8.400e-5845.02DNA topoisomerase n=3 Tax=Saprolegnia TaxID=4769 R... [more]
G4TIC8_SERID9.040e-5847.23DNA topoisomerase n=1 Tax=Serendipita indica (stra... [more]
T1J1V7_STRMM1.270e-5746.90DNA topoisomerase n=1 Tax=Strigamia maritima TaxID... [more]
A0A0C3PNK5_PISTI2.220e-5745.96DNA topoisomerase n=1 Tax=Pisolithus tinctorius Ma... [more]
A0A4D9CZ97_9STRA2.410e-5748.70DNA topoisomerase n=1 Tax=Nannochloropsis salina C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88025contigM-pyrifera_M_contig88025:136..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue2.1e-51
Seed eggNOG ortholog112098.XP_008605361.1
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000003,GO:0000018,GO:0000070,GO:0000278,GO:0000280,GO:0000712,GO:0000723,GO:0000724,GO:0000725,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006278,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007005,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009611,GO:0009888,GO:0009987,GO:0010833,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0031099,GO:0031323,GO:0031422,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040007,GO:0042060,GO:0042246,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044786,GO:0045132,GO:0046483,GO:0048285,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size690
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.8260422-CDS-M-pyrifera_M_contig88025:135..8251622816789.8260422-CDS-M-pyrifera_M_contig88025:135..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88025 136..825 -
1692278179.7492127-CDS-M-pyrifera_M_contig88025:135..8251692278179.7492127-CDS-M-pyrifera_M_contig88025:135..825Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88025 136..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88025.20448.1prot_M-pyrifera_M_contig88025.20448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88025 136..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88025.20448.1

>prot_M-pyrifera_M_contig88025.20448.1 ID=prot_M-pyrifera_M_contig88025.20448.1|Name=mRNA_M-pyrifera_M_contig88025.20448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=230bp
KNDQAHPPIHPTKLATRAALRGEGEWPLYRYVTRRFLAACSQDAKGNETT
LTVDAGGERFSATGLVVLERNFLDVFPYERWNARSLPALELGATLDPAQT
DLQLTDSETRPPTLLTESELIARMDREGIGTDATIADHIKTVQDRKYVFK
DGSYLTPSSFGMGLYRAYERIGVALCKPYLRREMERDCQAVADGRKQAPA
VVRECVGSMHQVYDLVRARRSIIIDSVKAF
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mRNA from alignment at M-pyrifera_M_contig88025:136..825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88025.20448.1 ID=mRNA_M-pyrifera_M_contig88025.20448.1|Name=mRNA_M-pyrifera_M_contig88025.20448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig88025:136..825- (Macrocystis pyrifera P11B4 male)
AAGAATGATCAAGCACATCCACCGATTCATCCTACAAAACTTGCAACTCG TGCTGCACTTCGTGGCGAGGGAGAATGGCCATTGTATCGATACGTGACAC GTCGTTTCCTTGCTGCATGTTCACAAGATGCAAAAGGAAATGAAACAACA TTGACTGTTGATGCAGGTGGAGAACGATTCTCTGCAACTGGATTAGTTGT GCTGGAACGAAACTTTCTTGATGTATTTCCATATGAACGATGGAATGCAC GTTCCTTACCAGCATTGGAGCTTGGTGCAACTCTTGACCCAGCACAAACA GATCTGCAACTTACAGATTCAGAAACACGTCCTCCTACACTTCTTACCGA ATCAGAACTCATTGCACGCATGGACCGTGAAGGAATTGGCACCGATGCTA CCATTGCTGATCACATAAAAACTGTCCAAGATCGAAAGTATGTTTTCAAA GATGGCTCCTACCTCACTCCATCTTCCTTTGGCATGGGATTGTATCGTGC ATATGAACGAATTGGAGTTGCTCTATGTAAACCATACCTTCGACGTGAAA TGGAACGTGATTGTCAAGCAGTTGCAGATGGAAGAAAGCAAGCACCTGCT GTTGTTCGTGAATGTGTTGGAAGTATGCATCAAGTCTATGATCTTGTGCG TGCACGTCGTTCTATCATCATAGACTCTGTCAAAGCATTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88025:136..825-

>mRNA_M-pyrifera_M_contig88025.20448.1 ID=mRNA_M-pyrifera_M_contig88025.20448.1|Name=mRNA_M-pyrifera_M_contig88025.20448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1380bp|location=Sequence derived from alignment at M-pyrifera_M_contig88025:136..825- (Macrocystis pyrifera P11B4 male)
AAGAATGATCAAGCACATCCACCGATTCATCCTACAAAACTTGCAACTCG
TGCTGCACTTCGTGGCGAGGGAGAATGGCCATTGTATCGATACGTGACAC
GTCGTTTCCTTGCTGCATGTTCACAAGATGCAAAAGGAAATGAAACAACA
TTGACTGTTGATGCAGGTGGAGAACGATTCTCTGCAACTGGATTAGTTGT
GCTGGAACGAAACTTTCTTGATGTATTTCCATATGAACGATGGAATGCAC
GTTCCTTACCAGCATTGGAGCTTGGTGCAACTCTTGACCCAGCACAAACA
GATCTGCAACTTACAGATTCAGAAACACGTCCTCCTACACTTCTTACCGA
ATCAGAACTCATTGCACGCATGGACCGTGAAGGAATTGGCACCGATGCTA
CCATTGCTGATCACATAAAAACTGTCCAAGATCGAAAGTATGTTTTCAAA
GATGGCTCCTACCTCACTCCATCTTCCTTTGGCATGGGATTGTATCGTGC
ATATGAACGAATTGGAGTTGCTCTATGTAAACCATACCTTCGACGTGAAA
TGGAACGTGATTGTCAAGCAGTTGCAGATGGAAGAAAGCAAGCACCTGCT
GTTGTTCGTGAATGTGTTGGAAGTATGCATCAAGTCTATGATCTTGTGCG
TGCACGTCGTTCTATCATCATAGACTCTGTCAAAGCATTTAAGAATGATC
AAGCACATCCACCGATTCATCCTACAAAACTTGCAACTCGTGCTGCACTT
CGTGGCGAGGGAGAATGGCCATTGTATCGATACGTGACACGTCGTTTCCT
TGCTGCATGTTCACAAGATGCAAAAGGAAATGAAACAACATTGACTGTTG
ATGCAGGTGGAGAACGATTCTCTGCAACTGGATTAGTTGTGCTGGAACGA
AACTTTCTTGATGTATTTCCATATGAACGATGGAATGCACGTTCCTTACC
AGCATTGGAGCTTGGTGCAACTCTTGACCCAGCACAAACAGATCTGCAAC
TTACAGATTCAGAAACACGTCCTCCTACACTTCTTACCGAATCAGAACTC
ATTGCACGCATGGACCGTGAAGGAATTGGCACCGATGCTACCATTGCTGA
TCACATAAAAACTGTCCAAGATCGAAAGTATGTTTTCAAAGATGGCTCCT
ACCTCACTCCATCTTCCTTTGGCATGGGATTGTATCGTGCATATGAACGA
ATTGGAGTTGCTCTATGTAAACCATACCTTCGACGTGAAATGGAACGTGA
TTGTCAAGCAGTTGCAGATGGAAGAAAGCAAGCACCTGCTGTTGTTCGTG
AATGTGTTGGAAGTATGCATCAAGTCTATGATCTTGTGCGTGCACGTCGT
TCTATCATCATAGACTCTGTCAAAGCATTT
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