mRNA_M-pyrifera_M_contig8802.20444.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8802.20444.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI) HSP 1 Score: 107 bits (268), Expect = 4.440e-22 Identity = 94/115 (81.74%), Postives = 99/115 (86.09%), Query Frame = 1 Query: 1723 KLSDHEKTKAALEDALDSTTLGDLWFEHGELKEARYEHLRALRIRMAKLPAGHRDVAESLESLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQPGK 2067 + S +K+K AL DALDST LGDLWFE GELKEARYEHLRALRIR A+LP GH D+AESLESLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQ GK Sbjct: 112 EFSAQQKSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGK 226
BLAST of mRNA_M-pyrifera_M_contig8802.20444.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.000e-18 Identity = 87/113 (76.99%), Postives = 91/113 (80.53%), Query Frame = 1 Query: 1729 SDHEKTKAALEDALDSTTLGDLWFEHGELKEARYEHLRALRIRMAKLPAGHRDVAESLESLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQPGK 2067 S +K+K AL DALDST GD WFE GELKEARYEHLRALRIR A+LP GH D+AESLESLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQ GK Sbjct: 1559 SAQQKSKTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGK 1671 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8802.20444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8802.20444.1 >prot_M-pyrifera_M_contig8802.20444.1 ID=prot_M-pyrifera_M_contig8802.20444.1|Name=mRNA_M-pyrifera_M_contig8802.20444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=685bp MHVLQAAYVRSVARGRLDLMKTLDQRREAALSVVGPGGLSAALAAATAVAback to top mRNA from alignment at M-pyrifera_M_contig8802:498..7248- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8802.20444.1 ID=mRNA_M-pyrifera_M_contig8802.20444.1|Name=mRNA_M-pyrifera_M_contig8802.20444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6751bp|location=Sequence derived from alignment at M-pyrifera_M_contig8802:498..7248- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8802:498..7248- >mRNA_M-pyrifera_M_contig8802.20444.1 ID=mRNA_M-pyrifera_M_contig8802.20444.1|Name=mRNA_M-pyrifera_M_contig8802.20444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4110bp|location=Sequence derived from alignment at M-pyrifera_M_contig8802:498..7248- (Macrocystis pyrifera P11B4 male)back to top |