mRNA_M-pyrifera_M_contig87721.20378.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87721.20378.1
Unique NamemRNA_M-pyrifera_M_contig87721.20378.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87721.20378.1 vs. uniprot
Match: A0A6B2LJH3_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJH3_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 5.420e-7
Identity = 31/88 (35.23%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:   34 ALLDLWFDCGGEDWQYKEGSEPFNRTNPGTWGPDEGDPCEEQWWGVFCNPDNTTVEILYPNSRFSGNPLKGTLPASFGDIQGLKQAYL 297
            AL+D +    G  W         N T+P       GDPC+ QW+G+ C+P NTTV IL      S + L+GT+P+S   +  L   +L
Sbjct:   13 ALMDFYNATRGPHWT--------NSTHPWLL----GDPCDSQWYGISCDPTNTTVTILV----LSSHNLEGTVPSSISKLSNLTMLFL 84
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BLAST of mRNA_M-pyrifera_M_contig87721.20378.1 vs. uniprot
Match: A0A7S4M514_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M514_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 2.270e-5
Identity = 27/76 (35.53%), Postives = 35/76 (46.05%), Query Frame = 1 
Query:    7 AAVSPEVRAALLDLWFD-CGGEDWQYKEGSEPFNRTNPGTWGPDEGDPCEEQWWGVFCNPDNTTVEILYPNSRFSG 231
            A +S       L+  +D  GG DW            N G+WG  EGDPC+ +W+GV C  D T   I  PN+   G
Sbjct:   31 ATISDSAEVTSLNSLYDQLGGPDW-----------NNSGSWG--EGDPCDNEWYGVTCLEDTTVNRIFLPNNNLVG 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87721.20378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6B2LJH3_9EUKA5.420e-735.23Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A7S4M514_9EUKA2.270e-535.53Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87721contigM-pyrifera_M_contig87721:99..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.65939-CDS-M-pyrifera_M_contig87721:98..5691622816786.65939-CDS-M-pyrifera_M_contig87721:98..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87721 99..569 +
1692278178.114555-CDS-M-pyrifera_M_contig87721:98..5691692278178.114555-CDS-M-pyrifera_M_contig87721:98..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87721 99..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87721.20378.1prot_M-pyrifera_M_contig87721.20378.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87721 99..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87721.20378.1

>prot_M-pyrifera_M_contig87721.20378.1 ID=prot_M-pyrifera_M_contig87721.20378.1|Name=mRNA_M-pyrifera_M_contig87721.20378.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
VEAAVSPEVRAALLDLWFDCGGEDWQYKEGSEPFNRTNPGTWGPDEGDPC
EEQWWGVFCNPDNTTVEILYPNSRFSGNPLKGTLPASFGDIQGLKQAYLS
NDRTPSRLEGSVPESIGQLTDLRCLYLAHNKMNGSLPASMAQLTNLQGLF
LRLNRFS
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mRNA from alignment at M-pyrifera_M_contig87721:99..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87721.20378.1 ID=mRNA_M-pyrifera_M_contig87721.20378.1|Name=mRNA_M-pyrifera_M_contig87721.20378.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig87721:99..569+ (Macrocystis pyrifera P11B4 male)
GTAGAGGCAGCCGTGAGCCCAGAGGTGCGTGCGGCGCTGCTCGACCTTTG
GTTCGATTGCGGAGGCGAAGATTGGCAATACAAAGAGGGGTCAGAGCCAT
TCAACAGAACCAACCCGGGCACATGGGGCCCAGATGAGGGGGATCCTTGT
GAAGAGCAGTGGTGGGGCGTCTTCTGCAACCCCGACAATACGACAGTGGA
GATTCTCTACCCAAACTCTCGCTTCAGCGGGAATCCGTTGAAAGGGACAC
TCCCTGCATCCTTTGGAGATATACAGGGCCTCAAACAGGCGTATCTTTCA
AATGATCGCACCCCCAGCCGCCTCGAGGGCTCAGTGCCGGAGAGCATTGG
CCAATTAACGGACCTCAGGTGCCTCTACCTCGCACACAACAAGATGAATG
GCTCCCTTCCTGCGTCCATGGCACAACTCACAAACCTCCAGGGTCTCTTC
TTGAGGCTCAACCGATTCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87721:99..569+

>mRNA_M-pyrifera_M_contig87721.20378.1 ID=mRNA_M-pyrifera_M_contig87721.20378.1|Name=mRNA_M-pyrifera_M_contig87721.20378.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig87721:99..569+ (Macrocystis pyrifera P11B4 male)
GTAGAGGCAGCCGTGAGCCCAGAGGTGCGTGCGGCGCTGCTCGACCTTTG
GTTCGATTGCGGAGGCGAAGATTGGCAATACAAAGAGGGGTCAGAGCCAT
TCAACAGAACCAACCCGGGCACATGGGGCCCAGATGAGGGGGATCCTTGT
GAAGAGCAGTGGTGGGGCGTCTTCTGCAACCCCGACAATACGACAGTGGA
GATTCTCTACCCAAACTCTCGCTTCAGCGGGAATCCGTTGAAAGGGACAC
TCCCTGCATCCTTTGGAGATATACAGGGCCTCAAACAGGCGTATCTTTCA
AATGATCGCACCCCCAGCCGCCTCGAGGGCTCAGTGCCGGAGAGCATTGG
CCAATTAACGGACCTCAGGTGCCTCTACCTCGCACACAACAAGATGAATG
GCTCCCTTCCTGCGTCCATGGCACAACTCACAAACCTCCAGGGTCTCTTC
TTGAGGCTCAACCGATTCTCTGTAGAGGCAGCCGTGAGCCCAGAGGTGCG
TGCGGCGCTGCTCGACCTTTGGTTCGATTGCGGAGGCGAAGATTGGCAAT
ACAAAGAGGGGTCAGAGCCATTCAACAGAACCAACCCGGGCACATGGGGC
CCAGATGAGGGGGATCCTTGTGAAGAGCAGTGGTGGGGCGTCTTCTGCAA
CCCCGACAATACGACAGTGGAGATTCTCTACCCAAACTCTCGCTTCAGCG
GGAATCCGTTGAAAGGGACACTCCCTGCATCCTTTGGAGATATACAGGGC
CTCAAACAGGCGTATCTTTCAAATGATCGCACCCCCAGCCGCCTCGAGGG
CTCAGTGCCGGAGAGCATTGGCCAATTAACGGACCTCAGGTGCCTCTACC
TCGCACACAACAAGATGAATGGCTCCCTTCCTGCGTCCATGGCACAACTC
ACAAACCTCCAGGGTCTCTTCTTGAGGCTCAACCGATTCTCT
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