prot_M-pyrifera_M_contig87721.20378.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig87721.20378.1
Unique Nameprot_M-pyrifera_M_contig87721.20378.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length157
Homology
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BLAST of mRNA_M-pyrifera_M_contig87721.20378.1 vs. uniprot
Match: A0A6B2LJH3_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJH3_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 5.420e-7
Identity = 31/88 (35.23%), Postives = 44/88 (50.00%), Query Frame = 0 
Query:   12 ALLDLWFDCGGEDWQYKEGSEPFNRTNPGTWGPDEGDPCEEQWWGVFCNPDNTTVEILYPNSRFSGNPLKGTLPASFGDIQGLKQAYL 99
            AL+D +    G  W         N T+P       GDPC+ QW+G+ C+P NTTV IL      S + L+GT+P+S   +  L   +L
Sbjct:   13 ALMDFYNATRGPHWT--------NSTHPWLL----GDPCDSQWYGISCDPTNTTVTILV----LSSHNLEGTVPSSISKLSNLTMLFL 84
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BLAST of mRNA_M-pyrifera_M_contig87721.20378.1 vs. uniprot
Match: A0A7S4M514_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M514_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 2.270e-5
Identity = 27/76 (35.53%), Postives = 35/76 (46.05%), Query Frame = 0 
Query:    3 AAVSPEVRAALLDLWFD-CGGEDWQYKEGSEPFNRTNPGTWGPDEGDPCEEQWWGVFCNPDNTTVEILYPNSRFSG 77
            A +S       L+  +D  GG DW            N G+WG  EGDPC+ +W+GV C  D T   I  PN+   G
Sbjct:   31 ATISDSAEVTSLNSLYDQLGGPDW-----------NNSGSWG--EGDPCDNEWYGVTCLEDTTVNRIFLPNNNLVG 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87721.20378.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6B2LJH3_9EUKA5.420e-735.23Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A7S4M514_9EUKA2.270e-535.53Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 26..157
e-value: 1.8E-23
score: 84.8
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 46..157
NoneNo IPR availablePANTHERPTHR46662:SF12RECEPTOR-LIKE PROTEIN 4coord: 46..157
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 48..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87721contigM-pyrifera_M_contig87721:99..569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87721.20378.1mRNA_M-pyrifera_M_contig87721.20378.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig87721 99..569 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig87721.20378.1 ID=prot_M-pyrifera_M_contig87721.20378.1|Name=mRNA_M-pyrifera_M_contig87721.20378.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
VEAAVSPEVRAALLDLWFDCGGEDWQYKEGSEPFNRTNPGTWGPDEGDPC
EEQWWGVFCNPDNTTVEILYPNSRFSGNPLKGTLPASFGDIQGLKQAYLS
NDRTPSRLEGSVPESIGQLTDLRCLYLAHNKMNGSLPASMAQLTNLQGLF
LRLNRFS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf