mRNA_M-pyrifera_M_contig87569.20338.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87569.20338.1
Unique NamemRNA_M-pyrifera_M_contig87569.20338.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A3D5DHL5_9GAMM (Mismatch-specific DNA-glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DHL5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 4.890e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   25 SLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 147
            S++WG Q   CAGA +F++PNPS ANAAYS  +I  W D+L
Sbjct:  131 SIDWGEQKSSCAGAVIFISPNPSTANAAYSLAEITAWYDKL 171
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BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A1T2L345_9GAMM (UDG domain-containing protein n=2 Tax=Gammaproteobacteria incertae sedis TaxID=118884 RepID=A0A1T2L345_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 5.510e-7
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 YAQGVRFESLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 147
            Y Q VR  S+EWG Q++    + VFVTPNPS ANAA+S   +  W  RL
Sbjct:  136 YTQNVRVPSIEWGEQSERIGNSMVFVTPNPSPANAAFSLQVLTEWDQRL 184
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BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A7V5UAW6_9GAMM (Mismatch-specific DNA-glycosylase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5UAW6_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    4 AQGVRFESLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 147
            A G+ F +  WG Q +  AG  VFV+PNPS ANAA+S DD+VR  D L
Sbjct:  140 AVGLSFSNDHWGLQQETVAGLPVFVSPNPSPANAAFSLDDLVRCYDEL 187
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BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A1G0JT32_9GAMM (UDG domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_52_10 TaxID=1798297 RepID=A0A1G0JT32_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 3.940e-5
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   25 SLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 147
            ++ WGAQ  L   + VFVTPNPS ANA YS DD++++ D +
Sbjct:  130 TIPWGAQKYLIGKSRVFVTPNPSPANAQYSLDDLIKYYDAM 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3D5DHL5_9GAMM4.890e-856.10Mismatch-specific DNA-glycosylase n=1 Tax=Gammapro... [more]
A0A1T2L345_9GAMM5.510e-751.02UDG domain-containing protein n=2 Tax=Gammaproteob... [more]
A0A7V5UAW6_9GAMM1.230e-654.17Mismatch-specific DNA-glycosylase n=1 Tax=Chromati... [more]
A0A1G0JT32_9GAMM3.940e-551.22UDG domain-containing protein n=1 Tax=Gammaproteob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87569contigM-pyrifera_M_contig87569:683..829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.2829566-CDS-M-pyrifera_M_contig87569:682..8291622816784.2829566-CDS-M-pyrifera_M_contig87569:682..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87569 683..829 -
1692278176.4706826-CDS-M-pyrifera_M_contig87569:682..8291692278176.4706826-CDS-M-pyrifera_M_contig87569:682..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87569 683..829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87569.20338.1prot_M-pyrifera_M_contig87569.20338.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87569 683..829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87569.20338.1

>prot_M-pyrifera_M_contig87569.20338.1 ID=prot_M-pyrifera_M_contig87569.20338.1|Name=mRNA_M-pyrifera_M_contig87569.20338.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
YAQGVRFESLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL
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mRNA from alignment at M-pyrifera_M_contig87569:683..829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87569.20338.1 ID=mRNA_M-pyrifera_M_contig87569.20338.1|Name=mRNA_M-pyrifera_M_contig87569.20338.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig87569:683..829- (Macrocystis pyrifera P11B4 male)
TACGCGCAGGGCGTGCGTTTCGAGTCGCTCGAGTGGGGCGCGCAGGCGCA
GTTGTGCGCCGGCGCCGCCGTGTTCGTGACCCCGAATCCGAGTGCGGCGA
ATGCCGCCTACAGTTTCGACGATATCGTCCGCTGGATGGATCGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87569:683..829-

>mRNA_M-pyrifera_M_contig87569.20338.1 ID=mRNA_M-pyrifera_M_contig87569.20338.1|Name=mRNA_M-pyrifera_M_contig87569.20338.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig87569:683..829- (Macrocystis pyrifera P11B4 male)
TACGCGCAGGGCGTGCGTTTCGAGTCGCTCGAGTGGGGCGCGCAGGCGCA
GTTGTGCGCCGGCGCCGCCGTGTTCGTGACCCCGAATCCGAGTGCGGCGA
ATGCCGCCTACAGTTTCGACGATATCGTCCGCTGGATGGATCGCCTCTAC
GCGCAGGGCGTGCGTTTCGAGTCGCTCGAGTGGGGCGCGCAGGCGCAGTT
GTGCGCCGGCGCCGCCGTGTTCGTGACCCCGAATCCGAGTGCGGCGAATG
CCGCCTACAGTTTCGACGATATCGTCCGCTGGATGGATCGCCTC
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