mRNA_M-pyrifera_M_contig8715.20263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8715.20263.1
Unique NamemRNA_M-pyrifera_M_contig8715.20263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A6H5L1Z1_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Z1_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 3.750e-74
Identity = 111/124 (89.52%), Postives = 115/124 (92.74%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGK--VKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VTYVNKAGE VAS DVP DRYIFFATE+A VDVPI+NKKRMCRNGCCTTCAVKVLEGK  VK EGALGLLK L+QEGYALTCCSYPKSDLVVQLQEEDDVYMKQFG+DFE GGVEWGGFFLDED
Sbjct:  112 VTYVNKAGEEVASADVPVDRYIFFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKARVKQEGALGLLKNLRQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGNDFEGGGVEWGGFFLDED 235          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A835Z8Q8_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q8_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.490e-52
Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VT  NKAGE VA +DVP DRYI+FA E+   D+P+ N +RMCRNGCCTTCA+ V EGKVK EG LGLLK+L+++G+ LTCCSY  +D+ +QLQ+ED+VY+KQ+G+ FE GGVEWGGF  +ED
Sbjct:   94 VTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 215          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A4D9CSH6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 6.390e-52
Identity = 77/122 (63.11%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VT V+   +T  ++DVP DRYIFFA E++ VD+P+VN KRMCRNGCCTTCAVK+ EGKVK E ALGLL+++K +GYAL+CCS P+SD+V +LQ+ED+VY++Q+G+ FE GGVEWGGF  ++D
Sbjct:   96 VTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYVRQWGETFESGGVEWGGFLPEDD 217          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A7S2V5A4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A4_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.610e-50
Identity = 75/115 (65.22%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   22 GETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            GE V  +DVPADRYI+FA E+A +++P++NK+R CRNGCCTTCAVK  EGK+K +  LGLLKE+K++GY L CCSYP+SDLVV++Q+ED+VY KQ+GD FE GGVEWGGF  ++D
Sbjct:  143 GEEV-EMDVPADRYIYFAFEDAGIELPLINKERACRNGCCTTCAVKTKEGKMKMDPQLGLLKEMKKQGYGLLCCSYPRSDLVVEVQKEDEVYRKQWGDTFESGGVEWGGFLPEDD 256          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A7S3YL42_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL42_HETAK)

HSP 1 Score: 154 bits (390), Expect = 4.580e-45
Identity = 72/125 (57.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKR---MCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VT  N    T  +  VP DRYIFF  EE ++ VPI++ +R   MCRNGCCTTCAVKV+EGKVK +  +GL+KEL++EGYAL CC+YP+SDLV+++  ED+ Y+KQ+G+ FE GGVEWGGF  ++D
Sbjct:   96 VTVKNVDEGTEVTHMVPIDRYIFFQFEEDDIPVPIISGQRGERMCRNGCCTTCAVKVVEGKVKQDAQIGLMKELRKEGYALMCCAYPRSDLVLEVTAEDECYIKQWGESFESGGVEWGGFLPEDD 220          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A482T133_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T133_9ARCH)

HSP 1 Score: 146 bits (369), Expect = 3.990e-42
Identity = 68/118 (57.63%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   13 NKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
             K GE    + VP DRYI+F  EE  V++PI NK RMCR GCCT C VKV EGKVK +  LGLLKE + +GYAL+CC+YPKSD+V +LQ+ED++Y+KQ+ + FE GGV WGG   + D
Sbjct:   85 KKTGEEFVQM-VPEDRYIYFYFEEQGVELPIHNKARMCRQGCCTICTVKVSEGKVKMDAPLGLLKEFRNDGYALSCCAYPKSDVVCELQDEDEMYIKQWAEGFEGGGVIWGGVLPEHD 201          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A7S1ER34_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER34_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 1.030e-40
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VT  + A     SV+VP DRYI+ + EE   D+P       CR+GCCTTCAV++ +G V  E ALGL+K L+++GYAL C SYP+SDLV  LQ+ D+VY+KQFG+ FE GG EWGG FLDED
Sbjct:   53 VTIKDPAKNVTHSVEVPVDRYIWHSMEEQGYDIPA-----SCRHGCCTTCAVRIEQGSVDQEEALGLMKALREQGYALLCVSYPESDLVATLQDADEVYVKQFGNSFESGGKEWGGVFLDED 169          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A5J4YT31_PORPP (Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT31_PORPP)

HSP 1 Score: 141 bits (355), Expect = 4.820e-40
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VT  +       SV VP DRYI+ A EE   D+P       CR+GCCTTCAV++  G V+ + ALGLL+E++ +GYAL C SYPKSD+V  LQ+ED+VY+KQFG  FE+GG EWGG FLDED
Sbjct:   82 VTVHDPKKNATYSVQVPEDRYIWHAMEEQGYDIPA-----SCRHGCCTTCAVRIESGAVQQDQALGLLREMRDQGYALLCVSYPKSDIVATLQDEDEVYIKQFGGTFEQGGKEWGGVFLDED 198          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: W7TUL4_9STRA (Ferredoxin (2fe-2s) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUL4_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.470e-40
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVY 297
            VT V+   +T  ++DVP DRYIFFA E++ VD+P+VN KRMCRNGCCTTCAVK+ EGKVK E ALGLL+++K +GYAL+CCS P+SD+V +LQ+ED+VY
Sbjct:   96 VTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194          
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Match: A0A7S1TD70_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD70_9RHOD)

HSP 1 Score: 135 bits (340), Expect = 3.260e-38
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTCAVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGDDFERGGVEWGGFFLDED 366
            VT  + A   V    VP DRYI++  EE   D+P       CRNGCCTTCA +V  G+V  + ALGLLKE+K +GYAL C SYP+SD+ V LQ+ D+VY +QFGD FE+GGVEWGGF  +E+
Sbjct:   47 VTVRDPAKNVVYETQVPEDRYIWWEMEEQGFDIPA-----SCRNGCCTTCAGRVTSGEVSQDEALGLLKEIKAQGYALLCVSYPRSDVEVTLQDIDEVYCRQFGDTFEQGGVEWGGFLPEEE 163          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8715.20263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z1_9PHAE3.750e-7489.522Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835Z8Q8_9STRA1.490e-5263.93Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A4D9CSH6_9STRA6.390e-5263.112Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2V5A4_9STRA4.610e-5065.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YL42_HETAK4.580e-4557.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482T133_9ARCH3.990e-4257.632Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A7S1ER34_9RHOD1.030e-4055.74Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YT31_PORPP4.820e-4055.74Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=... [more]
W7TUL4_9STRA8.470e-4064.65Ferredoxin (2fe-2s) n=1 Tax=Nannochloropsis gadita... [more]
A0A7S1TD70_9RHOD3.260e-3854.10Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8715contigM-pyrifera_M_contig8715:444..1706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue1.4e-57
Seed eggNOG ortholog2880.D7G7R1
Preferred namePETF2
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2RXRY@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons3
Model size371
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8715.20263.1prot_M-pyrifera_M_contig8715.20263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8715 444..1706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.00902-CDS-M-pyrifera_M_contig8715:443..6171622816781.00902-CDS-M-pyrifera_M_contig8715:443..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 444..617 +
1692278174.6367176-CDS-M-pyrifera_M_contig8715:443..6171692278174.6367176-CDS-M-pyrifera_M_contig8715:443..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 444..617 +
1622816781.022826-CDS-M-pyrifera_M_contig8715:1042..11591622816781.022826-CDS-M-pyrifera_M_contig8715:1042..1159Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 1043..1159 +
1692278174.6504083-CDS-M-pyrifera_M_contig8715:1042..11591692278174.6504083-CDS-M-pyrifera_M_contig8715:1042..1159Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 1043..1159 +
1622816781.034259-CDS-M-pyrifera_M_contig8715:1628..17061622816781.034259-CDS-M-pyrifera_M_contig8715:1628..1706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 1629..1706 +
1692278174.6594036-CDS-M-pyrifera_M_contig8715:1628..17061692278174.6594036-CDS-M-pyrifera_M_contig8715:1628..1706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8715 1629..1706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8715.20263.1

>prot_M-pyrifera_M_contig8715.20263.1 ID=prot_M-pyrifera_M_contig8715.20263.1|Name=mRNA_M-pyrifera_M_contig8715.20263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
VTYVNKAGETVASVDVPADRYIFFATEEAEVDVPIVNKKRMCRNGCCTTC
AVKVLEGKVKAEGALGLLKELKQEGYALTCCSYPKSDLVVQLQEEDDVYM
KQFGDDFERGGVEWGGFFLDED*
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mRNA from alignment at M-pyrifera_M_contig8715:444..1706+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8715.20263.1 ID=mRNA_M-pyrifera_M_contig8715.20263.1|Name=mRNA_M-pyrifera_M_contig8715.20263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at M-pyrifera_M_contig8715:444..1706+ (Macrocystis pyrifera P11B4 male)
GTGACGTACGTGAACAAGGCTGGCGAAACGGTTGCTTCGGTGGATGTTCC GGCTGATCGGTACATCTTTTTCGCTACCGAAGAGGCTGAAGTTGACGTTC CTATCGTCAACAAGAAGAGGATGTGCAGGAACGGGTGCTGTACCACGTGC GCTGTCAAGGTTTTGGAGGGAAAGGTACACGCTCCGAAAACCGTTCCGTT TGCAGTTTACACTGTACAGGCAGCAAGTAAAAGTACCCTCCACGCTGTTA GTTTTCTACTGGAGAAACATATCATCAGCCACCGACGTGAACTAGATCAG CTTACGAGTTGAAGTTTGTTCTCCACGTTAGTGTGCCGCGCGCGATCGCT ATCTACCCCCGGGCTGTAGAGTGAATCAAAGTGACCCGCAAGCAACTCAA GAAGGCACGCACTGCGCGCAATGGGTAGAACACAAATTGCGCACACAGAT ATCACCAGACTCACCATACGATTGAACCTGTCTGTTGATTGTGTAGACTA ATCGGCGGCGCCGTAGTGGTGTTCGGGCTTGCCAAACGGCAGGGTGCACT GCGACAAGTTTGAGAGTGAATTGTTCGCCTTGTACATTTCCGCAAGCAGG TAAAAGCTGAGGGTGCGCTCGGACTGCTGAAGGAGCTCAAGCAGGAAGGG TACGCCTTGACGTGCTGCTCCTACCCGAAATCGGACCTGGTGGTGCAGTT GCAGGAGGAAGACGATGTGAGCCTTTGAAGGTTTTGGCCACCCTCTTCTG CTCTGAATGGACACTGGCATTGAGACGGCGGGTCTGTGTGATTAGAGCTT GATTTCCCCGCATCGTTTCTCTCCACGCGATGTTTTCTTCGATACACTCG TACTCTTTTATTATTTTTTTTCGTCGCGCGTGGCAGACCAAGGGGGCCTT ACCATTCTTGCATGTAGCCCTAACTTGGAGGTGCTCCGCGTGCTCTGCTT ATGGTTTGGGTTGATCGCATACCGCGCGGAAACCCTGCGGAACAACTGAT TGTGACGGAACTATCGCTAAACGGTGCATTGGACACATAAGTACCCCTGT CCTGATTTAAGGCTCAAAGTTGTATCCCCGCCCCTACCGCATTTGCGACC TATCCAGGTCATGCGTTAGAATGTTGAATGTGTAACACCTTTTGAGACGG TTCGTATATTATTTTTTTTGCCTTCCCCGCTGCAGGTGTACATGAAGCAA TTCGGAGACGACTTCGAGAGAGGAGGGGTAGAATGGGGGGGCTTTTTCCT GGACGAGGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8715:444..1706+

>mRNA_M-pyrifera_M_contig8715.20263.1 ID=mRNA_M-pyrifera_M_contig8715.20263.1|Name=mRNA_M-pyrifera_M_contig8715.20263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig8715:444..1706+ (Macrocystis pyrifera P11B4 male)
GTGACGTACGTGAACAAGGCTGGCGAAACGGTTGCTTCGGTGGATGTTCC
GGCTGATCGGTACATCTTTTTCGCTACCGAAGAGGCTGAAGTTGACGTTC
CTATCGTCAACAAGAAGAGGATGTGCAGGAACGGGTGCTGTACCACGTGC
GCTGTCAAGGTTTTGGAGGGAAAGGTGACGTACGTGAACAAGGCTGGCGA
AACGGTTGCTTCGGTGGATGTTCCGGCTGATCGGTACATCTTTTTCGCTA
CCGAAGAGGCTGAAGTTGACGTTCCTATCGTCAACAAGAAGAGGATGTGC
AGGAACGGGTGCTGTACCACGTGCGCTGTCAAGGTTTTGGAGGGAAAGGT
AAAAGCTGAGGGTGCGCTCGGACTGCTGAAGGAGCTCAAGCAGGAAGGGT
ACGCCTTGACGTGCTGCTCCTACCCGAAATCGGACCTGGTGGTGCAGTTG
CAGGAGGAAGACGATGTAAAAGCTGAGGGTGCGCTCGGACTGCTGAAGGA
GCTCAAGCAGGAAGGGTACGCCTTGACGTGCTGCTCCTACCCGAAATCGG
ACCTGGTGGTGCAGTTGCAGGAGGAAGACGATGTGTACATGAAGCAATTC
GGAGACGACTTCGAGAGAGGAGGGGTAGAATGGGGGGGCTTTTTCCTGGA
CGAGGACTGAGTGTACATGAAGCAATTCGGAGACGACTTCGAGAGAGGAG
GGGTAGAATGGGGGGGCTTTTTCCTGGACGAGGACTGA
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