mRNA_M-pyrifera_M_contig86693.20163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86693.20163.1
Unique NamemRNA_M-pyrifera_M_contig86693.20163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86693.20163.1 vs. uniprot
Match: A0A3C2B185_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B185_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 5.070e-23
Identity = 61/166 (36.75%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    7 PAAVANHWNHLQTDDQHHRSLLFTQLPRSDVSAIWATRLADQLAGHRTLTTVFTPTSMTDAWHRIETDLTRLDAEADARAKAGFRISARHQRLTAEVQQREHELSDGHAELGINMLLQLTATTLDQLDDQETDARRIAAQAGGTLRRLDGQHNAGMCASIGLARGI 504
            P  V   W H+  DD  HRS      P+  V + W +RL       RT+T V  P  M  A    + ++   +A++D + + GFR++AR ++  A+ ++REHELS+GHAE     L+ ++A+TLD LDD  T   + AAQ    LR LD +H+ G  AS+ L R +
Sbjct:  317 PMVVEPDWRHVYVDDAFHRSYRVAGWPQLPVPSDWLSRLLADTHCIRTVTVVMEPVPMGRAARAADREVMAREADSDLKERKGFRVNARERKRLADAERREHELSEGHAEFRFVGLVNVSASTLDDLDDDCTVIEQAAAQCLLDLRPLDARHDQGWVASLPLGRAL 482          
BLAST of mRNA_M-pyrifera_M_contig86693.20163.1 vs. uniprot
Match: A0A2E0RV85_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RV85_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.140e-20
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    7 PAAVANHWNHLQTDDQHHRSLLFTQLPRSDVSAIWATRLADQLAGHRTLTTVFTPTSMTDAWHRIETDLTRLDAEADARAKAGFRISARHQRLTAEVQQREHELSDGHAELGINMLLQLTATTLDQLDDQETDARRIAAQAGGTLRRLDGQHNAGMCASIGLARGIA 507
            P  V   W+H++ D   HR+      P+  V + W + L       RT+T V  P  ++ A    + ++   +A+A+ + + GFR++AR ++  A+V+ RE ELS+GHAE     L+ +T+T  D LD++  D  + AAQ+   LR LD +H  G  AS+ L R +A
Sbjct:  321 PMVVEPEWSHVRVDGALHRTYRVAAWPQLSVGSDWLSPLLTDARATRTVTVVMEPIPISRAARAADREVMSREADAELKERKGFRVNARERKRLADVEARERELSEGHAEFRFVGLVTVTSTDADTLDEECADIEQTAAQSLLDLRPLDARHELGWLASLPLGRSLA 487          
BLAST of mRNA_M-pyrifera_M_contig86693.20163.1 vs. uniprot
Match: UPI0003755FB8 (hypothetical protein n=1 Tax=Actinoplanes globisporus TaxID=113565 RepID=UPI0003755FB8)

HSP 1 Score: 58.9 bits (141), Expect = 4.450e-7
Identity = 57/179 (31.84%), Postives = 81/179 (45.25%), Query Frame = 1
Query:    1 AQPAAVAN-HWNHLQTDDQHHRSLLFTQLPRSDVSAIWATRLADQLAGHRTLTTVFTPTSMTDAWHRIETDLTRLDAEADARAKAGFRISARHQRL--TAE-------VQQREHELSDGHAELGINMLLQLTATTLDQLDDQETDARRIAAQAGGTLRRLDG-QHNAGMCASIGLARGI 504
            A PAA     W   Q D  + R+L   Q+PR  V A W T L  +    RT+T V  P         +   L +L    +  A+AG  ++ R  RL  TA        V+Q + E + GH      +++ +TA +LD LD      RRI ++AG     L G Q  A   A++ LARG+
Sbjct:  313 AGPAAARTVGWTTYQHDSAYSRTLWVAQMPRQPVGATWLTPLYMRTTCRRTVTLVAQP---------VPASLAQLATRREKVARAGDEVTKRKLRLVRTAREDDEARAVEQIDREQAAGHVRYRYALMVTVTAGSLDGLDRDVQQVRRILSRAGCEAVVLAGEQDQAFAAAALPLARGL 482          
BLAST of mRNA_M-pyrifera_M_contig86693.20163.1 vs. uniprot
Match: UPI001AD56C7E (Uncharacterized protein n=2 Tax=Actinoplanes toevensis TaxID=571911 RepID=UPI001AD56C7E)

HSP 1 Score: 58.5 bits (140), Expect = 6.080e-7
Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   28 WNHLQTDDQHHRSLLFTQLPRSDVSAIWATRLADQLAGHRTLTTVFTPTSMTDAWHRIETDLTRLDAEADARAKAGFRISARHQRL--TAE-------VQQREHELSDGHAELGINMLLQLTATTLDQLDDQETDARRIAAQAGGTLRRLDG-QHNAGMCASIGLARGI 504
            W   Q D    R+L   Q+PR  + A W T L  +    RT+T V  P         +   L +L    +  A+AG  ++ R  RL  TA        V+Q + E + GH      +++ +TA TLD LD      RRI ++AG     L G Q  A   A++ LARG+
Sbjct:  337 WTTYQHDSAFSRTLWVAQMPRQPIGATWLTPLYMRTTCRRTVTLVAQP---------VPAGLAQLATRKEKVARAGDEVTKRKLRLVRTAREDDEARAVEQIDREQAAGHVRYRYALMVAVTARTLDGLDRDVQQVRRILSRAGCEAVVLAGEQDQAFAAAALPLARGL 496          
BLAST of mRNA_M-pyrifera_M_contig86693.20163.1 vs. uniprot
Match: UPI00193C1B21 (hypothetical protein n=1 Tax=Actinoplanes ovalisporus TaxID=2810368 RepID=UPI00193C1B21)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-6
Identity = 49/169 (28.99%), Postives = 75/169 (44.38%), Query Frame = 1
Query:   28 WNHLQTDDQHHRSLLFTQLPRSDVSAIWATRLADQLAGHRTLTTVFTPTSMTDAWHRIETDLTRLDAEADARAKAGFRISARHQRL---------TAEVQQREHELSDGHAELGINMLLQLTATTLDQLDDQETDARRIAAQAGGTLRRLDG-QHNAGMCASIGLARGI 504
            W   + D    R+L   Q+PR  V A W T L  +    RT+T V  P         + + L  L    D  A+AG  ++ R  RL         +  V+Q + E + GH      +++ +TA TL+ LD      +R+ ++AG     L G Q  A   A++ LARG+
Sbjct:  308 WTTYEHDSAFSRTLWVAQMPRQPVDATWLTPLYMRTTCRRTVTLVAQP---------VPSGLAELATRRDKVARAGDEVTKRKLRLVRTAREDAESRAVEQIDREQAAGHVRYRYALMVAVTARTLEGLDQDVHQVKRVLSRAGCEAVVLAGEQDQAFAAAALPLARGL 467          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86693.20163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3C2B185_9ACTN5.070e-2336.75Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E0RV85_9ACTN1.140e-2033.53Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI0003755FB84.450e-731.84hypothetical protein n=1 Tax=Actinoplanes globispo... [more]
UPI001AD56C7E6.080e-731.36Uncharacterized protein n=2 Tax=Actinoplanes toeve... [more]
UPI00193C1B212.030e-628.99hypothetical protein n=1 Tax=Actinoplanes ovalispo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86693contigM-pyrifera_M_contig86693:218..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.9
Seed ortholog evalue6.4e-13
Seed eggNOG ortholog222534.KB893723_gene611
Hectar predicted targeting categoryother localisation
EggNOG OGs28IJ8@1,2GIV3@201174,2Z8K6@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.111687-CDS-M-pyrifera_M_contig86693:217..7271622816776.111687-CDS-M-pyrifera_M_contig86693:217..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86693 218..727 +
1692278171.6116002-CDS-M-pyrifera_M_contig86693:217..7271692278171.6116002-CDS-M-pyrifera_M_contig86693:217..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86693 218..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86693.20163.1prot_M-pyrifera_M_contig86693.20163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86693 218..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86693.20163.1

>prot_M-pyrifera_M_contig86693.20163.1 ID=prot_M-pyrifera_M_contig86693.20163.1|Name=mRNA_M-pyrifera_M_contig86693.20163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
AQPAAVANHWNHLQTDDQHHRSLLFTQLPRSDVSAIWATRLADQLAGHRT
LTTVFTPTSMTDAWHRIETDLTRLDAEADARAKAGFRISARHQRLTAEVQ
QREHELSDGHAELGINMLLQLTATTLDQLDDQETDARRIAAQAGGTLRRL
DGQHNAGMCASIGLARGIA*
back to top

mRNA from alignment at M-pyrifera_M_contig86693:218..727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86693.20163.1 ID=mRNA_M-pyrifera_M_contig86693.20163.1|Name=mRNA_M-pyrifera_M_contig86693.20163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig86693:218..727+ (Macrocystis pyrifera P11B4 male)
GCCCAACCCGCCGCCGTCGCAAACCACTGGAACCACCTCCAAACCGACGA CCAACACCACCGGTCACTGCTGTTCACCCAACTCCCACGATCCGACGTCA GCGCCATCTGGGCCACCCGCCTCGCCGACCAACTCGCCGGACACCGCACC CTCACCACCGTCTTCACCCCCACCTCCATGACCGACGCCTGGCATCGCAT CGAAACCGACCTCACCCGCCTCGACGCCGAAGCCGACGCCCGCGCCAAAG CCGGCTTCCGGATCTCGGCACGCCACCAACGCCTCACCGCCGAAGTCCAA CAACGAGAACACGAACTCTCTGACGGCCACGCCGAACTCGGCATCAACAT GCTCCTCCAACTCACCGCCACCACCCTCGACCAGCTCGACGACCAAGAAA CCGACGCACGACGCATCGCCGCCCAAGCGGGCGGCACCCTCCGACGCCTC GACGGCCAACACAACGCCGGCATGTGCGCATCCATCGGACTCGCACGCGG CATCGCATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86693:218..727+

>mRNA_M-pyrifera_M_contig86693.20163.1 ID=mRNA_M-pyrifera_M_contig86693.20163.1|Name=mRNA_M-pyrifera_M_contig86693.20163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig86693:218..727+ (Macrocystis pyrifera P11B4 male)
GCCCAACCCGCCGCCGTCGCAAACCACTGGAACCACCTCCAAACCGACGA
CCAACACCACCGGTCACTGCTGTTCACCCAACTCCCACGATCCGACGTCA
GCGCCATCTGGGCCACCCGCCTCGCCGACCAACTCGCCGGACACCGCACC
CTCACCACCGTCTTCACCCCCACCTCCATGACCGACGCCTGGCATCGCAT
CGAAACCGACCTCACCCGCCTCGACGCCGAAGCCGACGCCCGCGCCAAAG
CCGGCTTCCGGATCTCGGCACGCCACCAACGCCTCACCGCCGAAGTCCAA
CAACGAGAACACGAACTCTCTGACGGCCACGCCGAACTCGGCATCAACAT
GCTCCTCCAACTCACCGCCACCACCCTCGACCAGCTCGACGACCAAGAAA
CCGACGCACGACGCATCGCCGCCCAAGCGGGCGGCACCCTCCGACGCCTC
GACGGCCAACACAACGCCGGCATGTGCGCATCCATCGGACTCGCACGCGG
CATCGCATGAGCCCAACCCGCCGCCGTCGCAAACCACTGGAACCACCTCC
AAACCGACGACCAACACCACCGGTCACTGCTGTTCACCCAACTCCCACGA
TCCGACGTCAGCGCCATCTGGGCCACCCGCCTCGCCGACCAACTCGCCGG
ACACCGCACCCTCACCACCGTCTTCACCCCCACCTCCATGACCGACGCCT
GGCATCGCATCGAAACCGACCTCACCCGCCTCGACGCCGAAGCCGACGCC
CGCGCCAAAGCCGGCTTCCGGATCTCGGCACGCCACCAACGCCTCACCGC
CGAAGTCCAACAACGAGAACACGAACTCTCTGACGGCCACGCCGAACTCG
GCATCAACATGCTCCTCCAACTCACCGCCACCACCCTCGACCAGCTCGAC
GACCAAGAAACCGACGCACGACGCATCGCCGCCCAAGCGGGCGGCACCCT
CCGACGCCTCGACGGCCAACACAACGCCGGCATGTGCGCATCCATCGGAC
TCGCACGCGGCATCGCATGA
back to top