prot_M-pyrifera_M_contig100918.201.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig100918.201.1
Unique Name	prot_M-pyrifera_M_contig100918.201.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	115

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-9
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0

Query:   26 RELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDPACPTCHHRTPALPCAHRCVLVDNLVMQLLRGLP-TVERGKWERRVVE 114
            R+ +CGLCS+L++DA+VLPCSH+FC LC + H+       T P C    H +   P   RC  +D L+  ++  L    ER +W  R  E
Sbjct:  224 RDAMCGLCSELLLDAAVLPCSHSFCRLCWAEHVEEKGT--TCPVCLRKMHSSERTP--RRCSNLDLLITSIIHKLAGPEERARWTARQEE 309

[Close]

BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.970e-9
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0

Query:   26 RELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDPACPTCHHRTPALPCAHRCVLVDNLVMQLLRGLP-TVERGKWERRVVE 114
            R+ +CGLCS+L++DA+VLPCSH+FC LC + H+       T P C    H +   P   RC  +D L+  ++  L    ER +W  R  E
Sbjct:  234 RDAMCGLCSELLLDAAVLPCSHSFCRLCWAGHVEEKGT--TCPVCLRKMHSSERTP--RRCSNLDLLITSIIHKLAGPQERARWTARQEE 319

[Close]

BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: W7TPZ6_9STRA (E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPZ6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.000e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 0

Query:   24 LRRELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDP 68
            L  EL C LCS+++MDA VLPCSHAFC  C+ R+L+    P  DP
Sbjct:  486 LEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK--AGPDKDP 528

[Close]

BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: A0A4D9D4J4_9STRA (E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4J4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.870e-5
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0

Query:   24 LRRELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDP 68
            L  EL C LCS+++MDA VLPCSHAFC  C+  +L+    P  DP
Sbjct:  427 LEAELGCALCSEIVMDAGVLPCSHAFCFSCVHTYLK--DGPDKDP 469

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7G7R3_ECTSI	1.590e-9	38.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KYS2_9PHAE	2.970e-9	38.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
W7TPZ6_9STRA	1.000e-5	55.56	E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochlo...	[more]
A0A4D9D4J4_9STRA	8.870e-5	53.33	E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochlo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 30..73 e-value: 1.8E-5 score: 34.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 30..74 score: 11.516
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 16..114 e-value: 1.4E-13 score: 52.6
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 30..73 e-value: 7.7E-8 score: 32.1
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 45..54
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 23..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig100918	contig	M-pyrifera_M_contig100918:187..531 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig100918.201.1	mRNA_M-pyrifera_M_contig100918.201.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig100918 187..531 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig100918.201.1 ID=prot_M-pyrifera_M_contig100918.201.1|Name=mRNA_M-pyrifera_M_contig100918.201.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
AAAATSAVASQCSLLLPDDTAPALRRELLCGLCSQLMMDASVLPCSHAFC
ELCISRHLRRVTFPRTDPACPTCHHRTPALPCAHRCVLVDNLVMQLLRGL
PTVERGKWERRVVEH

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR018957	Znf_C3HC4_RING-type
IPR017907	Znf_RING_CS