mRNA_M-pyrifera_M_contig100918.201.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100918.201.1
Unique NamemRNA_M-pyrifera_M_contig100918.201.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-9
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   76 RELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDPACPTCHHRTPALPCAHRCVLVDNLVMQLLRGLP-TVERGKWERRVVE 342
            R+ +CGLCS+L++DA+VLPCSH+FC LC + H+       T P C    H +   P   RC  +D L+  ++  L    ER +W  R  E
Sbjct:  224 RDAMCGLCSELLLDAAVLPCSHSFCRLCWAEHVEEKGT--TCPVCLRKMHSSERTP--RRCSNLDLLITSIIHKLAGPEERARWTARQEE 309
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BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.970e-9
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   76 RELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDPACPTCHHRTPALPCAHRCVLVDNLVMQLLRGLP-TVERGKWERRVVE 342
            R+ +CGLCS+L++DA+VLPCSH+FC LC + H+       T P C    H +   P   RC  +D L+  ++  L    ER +W  R  E
Sbjct:  234 RDAMCGLCSELLLDAAVLPCSHSFCRLCWAGHVEEKGT--TCPVCLRKMHSSERTP--RRCSNLDLLITSIIHKLAGPQERARWTARQEE 319
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BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: W7TPZ6_9STRA (E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPZ6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.000e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   70 LRRELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDP 204
            L  EL C LCS+++MDA VLPCSHAFC  C+ R+L+    P  DP
Sbjct:  486 LEAELGCALCSEIVMDAGVLPCSHAFCFSCVHRYLK--AGPDKDP 528
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BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Match: A0A4D9D4J4_9STRA (E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4J4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.870e-5
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   70 LRRELLCGLCSQLMMDASVLPCSHAFCELCISRHLRRVTFPRTDP 204
            L  EL C LCS+++MDA VLPCSHAFC  C+  +L+    P  DP
Sbjct:  427 LEAELGCALCSEIVMDAGVLPCSHAFCFSCVHTYLK--DGPDKDP 469
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100918.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7R3_ECTSI1.590e-938.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYS2_9PHAE2.970e-938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TPZ6_9STRA1.000e-555.56E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochlo... [more]
A0A4D9D4J4_9STRA8.870e-553.33E3 ubiquitin-protein ligase CHFR n=1 Tax=Nannochlo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100918contigM-pyrifera_M_contig100918:187..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog2880.D7G7R3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Forkhead associated domain
EggNOG OGs2CZV7@1,2SBTG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815506.6033535-CDS-M-pyrifera_M_contig100918:186..5311622815506.6033535-CDS-M-pyrifera_M_contig100918:186..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100918 187..531 +
1692277442.2684436-CDS-M-pyrifera_M_contig100918:186..5311692277442.2684436-CDS-M-pyrifera_M_contig100918:186..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100918 187..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100918.201.1prot_M-pyrifera_M_contig100918.201.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100918 187..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100918.201.1

>prot_M-pyrifera_M_contig100918.201.1 ID=prot_M-pyrifera_M_contig100918.201.1|Name=mRNA_M-pyrifera_M_contig100918.201.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
AAAATSAVASQCSLLLPDDTAPALRRELLCGLCSQLMMDASVLPCSHAFC
ELCISRHLRRVTFPRTDPACPTCHHRTPALPCAHRCVLVDNLVMQLLRGL
PTVERGKWERRVVEH
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mRNA from alignment at M-pyrifera_M_contig100918:187..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100918.201.1 ID=mRNA_M-pyrifera_M_contig100918.201.1|Name=mRNA_M-pyrifera_M_contig100918.201.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig100918:187..531+ (Macrocystis pyrifera P11B4 male)
GCTGCGGCGGCCACCTCCGCTGTCGCTTCGCAGTGCTCGCTGCTGCTGCC
CGACGACACCGCCCCCGCGCTGCGCCGCGAGCTGCTGTGCGGGCTGTGCT
CGCAGCTGATGATGGACGCGTCGGTGCTGCCGTGCTCGCACGCGTTTTGC
GAGCTGTGCATCTCCCGGCACCTCCGCCGCGTTACTTTTCCCCGCACCGA
CCCGGCGTGCCCGACTTGCCACCACCGCACGCCGGCGCTGCCGTGCGCGC
ACCGGTGCGTGCTGGTGGACAACCTGGTGATGCAGCTGCTGCGCGGGCTG
CCGACGGTGGAGCGGGGAAAGTGGGAGCGGAGGGTGGTGGAACAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100918:187..531+

>mRNA_M-pyrifera_M_contig100918.201.1 ID=mRNA_M-pyrifera_M_contig100918.201.1|Name=mRNA_M-pyrifera_M_contig100918.201.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig100918:187..531+ (Macrocystis pyrifera P11B4 male)
GCTGCGGCGGCCACCTCCGCTGTCGCTTCGCAGTGCTCGCTGCTGCTGCC
CGACGACACCGCCCCCGCGCTGCGCCGCGAGCTGCTGTGCGGGCTGTGCT
CGCAGCTGATGATGGACGCGTCGGTGCTGCCGTGCTCGCACGCGTTTTGC
GAGCTGTGCATCTCCCGGCACCTCCGCCGCGTTACTTTTCCCCGCACCGA
CCCGGCGTGCCCGACTTGCCACCACCGCACGCCGGCGCTGCCGTGCGCGC
ACCGGTGCGTGCTGGTGGACAACCTGGTGATGCAGCTGCTGCGCGGGCTG
CCGACGGTGGAGCGGGGAAAGTGGGAGCGGAGGGTGGTGGAACACGCTGC
GGCGGCCACCTCCGCTGTCGCTTCGCAGTGCTCGCTGCTGCTGCCCGACG
ACACCGCCCCCGCGCTGCGCCGCGAGCTGCTGTGCGGGCTGTGCTCGCAG
CTGATGATGGACGCGTCGGTGCTGCCGTGCTCGCACGCGTTTTGCGAGCT
GTGCATCTCCCGGCACCTCCGCCGCGTTACTTTTCCCCGCACCGACCCGG
CGTGCCCGACTTGCCACCACCGCACGCCGGCGCTGCCGTGCGCGCACCGG
TGCGTGCTGGTGGACAACCTGGTGATGCAGCTGCTGCGCGGGCTGCCGAC
GGTGGAGCGGGGAAAGTGGGAGCGGAGGGTGGTGGAACAC
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