mRNA_M-pyrifera_M_contig10960.2015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10960.2015.1
Unique NamemRNA_M-pyrifera_M_contig10960.2015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10960.2015.1 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 5.680e-79
Identity = 328/715 (45.87%), Postives = 360/715 (50.35%), Query Frame = 1 
Query:    1 QSVRSDMDAGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVKSDYNTVEQAGGWPMDVHPPSEAHAGAPAPCFCSSVMRRAVARHTKMVAPSMPATLPTLPASFPMDPFQLGIPWNPGS-----------------PSNAGVVSSARAPVGNAAVYGVPGQVVGPTA----AAAAXXXXXPGAGGADGTAGSTLFPKTEIEIEGGG----------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAATSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTVGWRQSQPAPASXXXXXXXXXXFPSTPAAPGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRWGVGSADGLPEAFPLAGMTFEGVFSPSQERHKLAPLYNNSNXXXXXXXXXXXXXXXXXXXXXXXXATLDVLDTPIPTPPLVSPAGGAGSREXXXXXXXXXXXXXVVTDAMATVTAAV--PGFLVGEPGLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----KGAGASHHSGAGSAGDALDVVAMGEDLSDEAKALAEEGLLDLVRDAWGEETTDRAHAYLEQDALPYLPIDGRAFALAVEGRLEPGGELETNYGKAAVEV 2034
            QSVRSDMDAGRAAAGLPVA+WSESHMVNVRLVVDVLIALGLVKSDYNTVEQ+ GWPMDVHPPSE+H GAPAPCFCSSVMRRA+ARHTKM  P++PA LP+L ASFP+DPFQLGIPWNPGS                                 AAVYGVPGQV  P+     AAA       G GGA       L PK EIE  GG           A                                           ++                        XXXXXX                                                   ++V W  S  A   XXXXXXXXXX  + P AP                                           R    + +GLP+   L G+TFEGVFSPSQER KLAPL N S    XXXXXXXXXXXXXXXXXXXXX               +S   G+                  V DA + V A    PG            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXX        +G GAS      S G  LDVVA+GE LSDEAKALAEEGL DLVRDAWG E ++RAH Y+E++A+P LP+DGRAFALAVEGRLEPGGE+ET YGKAAVE+
Sbjct:  340 QSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGGAPAPCFCSSVMRRAMARHTKMATPAVPAALPSLTASFPIDPFQLGIPWNPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVYGVPGQVGAPSTVVARAAAMQGGRLTGGGGA-------LSPKREIEAGGGAGLPGRLLVEPAAPVAAAAAAYSAAAWCGHGSTADRPGYSRRAGGLSGAVFGAGSSSAKEGPSVSWQQQQRTGRGETVAAVXXXXXXEALPSMLSPASSSLAIEGTIPGNHGSTTGGTDSSGGDGPRQAVLSGPSPATTSVAWHPS--AGVXXXXXXXXXXXHGTIPRAPPPTPLLSTTTPPRTTNTAVSVGGVGVGSGPATVAVSAGWEARSR----AVEGLPDPLSLTGLTFEGVFSPSQERQKLAPLLNMSGGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN---LSAIAGSNDTTAAAAAGNSTAMELGVVDAGSGVNAFARSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGLGVAASXXXNAAMVVAARGTGASV-----SPGVPLDVVALGEHLSDEAKALAEEGLFDLVRDAWGSEASERAHCYVEEEAVPSLPVDGRAFALAVEGRLEPGGEVETTYGKAAVEM 1033
[Close]
BLAST of mRNA_M-pyrifera_M_contig10960.2015.1 vs. uniprot
Match: A0A6H5KYA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA3_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 4.110e-57
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:    1 QSVRSDMDAGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVKSDYNTVEQAGGWPMDVHPPSEAHAGAPAPCFCSSVMRRAVARHTKMVAPSMPATLPTLPASFPMDPFQLGIPWNPGS 360
            QSVRSDMDAGRAAAGLPVA+WSESHMVNVRLVVDVLIALGLVKSDYNTVEQ+ GWPMDVHPPSE+H GAPAPCFCSSVMRRA+ARHTKM  P++PA LP+L ASFP+DPFQLGIPWNPG+
Sbjct:  496 QSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGGAPAPCFCSSVMRRAMARHTKMATPAVPAVLPSLTASFPIDPFQLGIPWNPGA 615
[Close]
BLAST of mRNA_M-pyrifera_M_contig10960.2015.1 vs. uniprot
Match: A0A6H5LFU5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFU5_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.980e-28
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1 
Query: 1774 SAGDALDVVAMGEDLSDEAKALAEEGLLDLVRDAWGEETTDRAHAYLEQDALPYLPIDGRAFALAVEGRLEPGGELETNYGKAAVEV 2034
            S G  LDVVA+GE LSDEAKALAEEGL DLVRDAWG E + RAH+Y+E++  P LP+DGRAFALAVEGRLEPGGE+ET YGKAAVE+
Sbjct:  971 SPGAPLDVVALGEHLSDEAKALAEEGLFDLVRDAWGGEASARAHSYVEEEVAPSLPVDGRAFALAVEGRLEPGGEVETTYGKAAVEM 1057
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10960.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHA8_ECTSI5.680e-7945.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYA3_9PHAE4.110e-5787.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LFU5_9PHAE4.980e-2875.86Reverse transcriptase domain-containing protein n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10960contigM-pyrifera_M_contig10960:1127..9374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_001200.1
Exons8
Model size2034
Cds size2016
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.83094-CDS-M-pyrifera_M_contig10960:1126..13331622815606.83094-CDS-M-pyrifera_M_contig10960:1126..1333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 1127..1333 -
1692277484.7566872-CDS-M-pyrifera_M_contig10960:1126..13331692277484.7566872-CDS-M-pyrifera_M_contig10960:1126..1333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 1127..1333 -
1622815606.852108-CDS-M-pyrifera_M_contig10960:1832..20471622815606.852108-CDS-M-pyrifera_M_contig10960:1832..2047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 1833..2047 -
1692277484.766486-CDS-M-pyrifera_M_contig10960:1832..20471692277484.766486-CDS-M-pyrifera_M_contig10960:1832..2047Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 1833..2047 -
1622815606.8637657-CDS-M-pyrifera_M_contig10960:3095..33391622815606.8637657-CDS-M-pyrifera_M_contig10960:3095..3339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 3096..3339 -
1692277484.775536-CDS-M-pyrifera_M_contig10960:3095..33391692277484.775536-CDS-M-pyrifera_M_contig10960:3095..3339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 3096..3339 -
1622815606.8734741-CDS-M-pyrifera_M_contig10960:3483..36001622815606.8734741-CDS-M-pyrifera_M_contig10960:3483..3600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 3484..3600 -
1692277484.7850025-CDS-M-pyrifera_M_contig10960:3483..36001692277484.7850025-CDS-M-pyrifera_M_contig10960:3483..3600Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 3484..3600 -
1622815606.8836498-CDS-M-pyrifera_M_contig10960:4763..51861622815606.8836498-CDS-M-pyrifera_M_contig10960:4763..5186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 4764..5186 -
1692277484.7953806-CDS-M-pyrifera_M_contig10960:4763..51861692277484.7953806-CDS-M-pyrifera_M_contig10960:4763..5186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 4764..5186 -
1622815606.8932433-CDS-M-pyrifera_M_contig10960:6934..71971622815606.8932433-CDS-M-pyrifera_M_contig10960:6934..7197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 6935..7197 -
1692277484.8039038-CDS-M-pyrifera_M_contig10960:6934..71971692277484.8039038-CDS-M-pyrifera_M_contig10960:6934..7197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 6935..7197 -
1622815606.905319-CDS-M-pyrifera_M_contig10960:7844..82061622815606.905319-CDS-M-pyrifera_M_contig10960:7844..8206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 7845..8206 -
1692277484.8123174-CDS-M-pyrifera_M_contig10960:7844..82061692277484.8123174-CDS-M-pyrifera_M_contig10960:7844..8206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 7845..8206 -
1622815606.9199417-CDS-M-pyrifera_M_contig10960:9171..93561622815606.9199417-CDS-M-pyrifera_M_contig10960:9171..9356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 9172..9356 -
1692277484.8207128-CDS-M-pyrifera_M_contig10960:9171..93561692277484.8207128-CDS-M-pyrifera_M_contig10960:9171..9356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10960 9172..9356 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.9336956-UTR-M-pyrifera_M_contig10960:9356..93741622815606.9336956-UTR-M-pyrifera_M_contig10960:9356..9374Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10960 9357..9374 -
1692277484.828918-UTR-M-pyrifera_M_contig10960:9356..93741692277484.828918-UTR-M-pyrifera_M_contig10960:9356..9374Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10960 9357..9374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10960.2015.1prot_M-pyrifera_M_contig10960.2015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10960 1127..9356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10960.2015.1

>prot_M-pyrifera_M_contig10960.2015.1 ID=prot_M-pyrifera_M_contig10960.2015.1|Name=mRNA_M-pyrifera_M_contig10960.2015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=672bp
MDAGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVKSDYNTVEQAGGWP
MDVHPPSEAHAGAPAPCFCSSVMRRAVARHTKMVAPSMPATLPTLPASFP
MDPFQLGIPWNPGSPSNAGVVSSARAPVGNAAVYGVPGQVVGPTAAAAAV
AAVVPGAGGADGTAGSTLFPKTEIEIEGGGAGGTAAARAAAAAATAAAAA
AAAAAPGAGTAAPASAPAAAPATPAATSTTTAGSAAAATAATAAAAAAAT
TTTAATTTTAAAAATDSAAALDQIMAAASSALRREGEGTAGPQRENGGGG
GGGGGGVSTVGWRQSQPAPASSSPIPPSSLLFPSTPAAPGLASAPPLLVV
STPPRQIHSAAFSSGESGGGGTGGGEAVVGGGRWGVGSADGLPEAFPLAG
MTFEGVFSPSQERHKLAPLYNNSNSSSAAATTAATIATTATTTTTTTNAT
LDVLDTPIPTPPLVSPAGGAGSREGAGAREGAGARAGVVTDAMATVTAAV
PGFLVGEPGLAAAGAGGGDGGGAAGDVAGAGAVQAGGSVGGGGGGGGDCD
GGGGGINAVAAAAAASAAMMVAAKGAGASHHSGAGSAGDALDVVAMGEDL
SDEAKALAEEGLLDLVRDAWGEETTDRAHAYLEQDALPYLPIDGRAFALA
VEGRLEPGGELETNYGKAAVEV
back to top

mRNA from alignment at M-pyrifera_M_contig10960:1127..9374-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10960.2015.1 ID=mRNA_M-pyrifera_M_contig10960.2015.1|Name=mRNA_M-pyrifera_M_contig10960.2015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8248bp|location=Sequence derived from alignment at M-pyrifera_M_contig10960:1127..9374- (Macrocystis pyrifera P11B4 male)
CAGTCTGTTAGGTCGGACATGGACGCCGGCCGGGCTGCGGCTGGACTTCC
GGTGGCAGACTGGTCCGAGTCCCACATGGTTAATGTTCGCCTCGTGGTGG
ACGTGCTTATTGCCCTCGGGCTGGTGAAGTCGGATTACAACACGGTGGAG
CAGGCAGGGGGGTGGCCCATGGATGTACACCCCCCCAGTGAAGCTCACGC
AGGGTGAGTGAGAGTGATGTTCAAGTTAGTGAGGGATAGTTAGTTGGGAG
CAAAACTCGTCTTTGATTGAAAACAGTGAGTGTAAATAGTGGAATGGTTT
TGGTGTTTGTGAAGATGAACGAGCGCAGGGAAAAAGAGCACGGGATGGTG
AGGGAGAGATCATGTAGTTGGAAGAGGGAGTGGAAGATGGAGTTGAAAAA
GAGCTTTGATCAGTGAAAAAAACGTTTTTATCAGCCAAAGAGTGCTGTGG
TCAGGGGAAAACGTTTTTACCCGTGAATAAGTAGTGAGTGAAAAAGGTCT
CGTGAGTGGAAAGAGGGGGTACAATAGAAATGACGAGTGCAAGTAAAAGA
GTGGGGGAAAAGGCGAGAGAACGATTGAGAAATGGAACAGTAGCCATTAC
GGGGGTCCATAGTTAATAGGACCTATGGTGCGCATAAAAAACTATATATT
TACCTGTTTTTACTAACAATATTTGGTTCTATTTACTATGATCCACCGTA
ATAGTTAAATAGCTTAAGGGATAACGAAAGAATTTGGTGGAAGGGCAGGT
CAACGTGGGCGTGAAACGGGGAGAAATAGCGAGTCGAAGAGTGATTGTAG
AAAGTACAAGCGAGATTATTTCCGAAACATGCGAGGTAAGAAGTGAGGGA
AATAGTAGGTGAGTGGGTGACAAGAGCCCGGTTGCGCTGTCTCACTCCCG
ACTCTCCCCCTTGTCCTTTTGCCCCCCGCCCCCACTGCGTCTGCTCGGTG
GCAACCCTTTTATTTTTTTTATCACGTCTATCTGTATGTCTGTCTGTGTC
TGTCCGTCTGTCTGTATGTCTGTGTGGCTGTCTGTATGCTTGTTTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATCTGCCTCTCCGTC
TGTTTGCCTATCCGTCTGTCCATCCATCCATCCATCCACTCCTCTGTCGG
AACCAAAACAAAACACAGCGCGCCAGCCCCGTGCTTTTGCTCCTCCGTCA
TGCGGCGCGCCGTCGCCCGCCACACGAAGATGGTAGCCCCCTCCATGCCC
GCCACGTTGCCTACACTCCCGGCCTCCTTCCCCATGGACCCCTTCCAACT
CGGCATCCCCTGGAACCCCGGCTCCCCCTCGAACGCTGGCGTCGTTTCGT
CGGCACGCGCCCCGGTCGGTAATGCAGCTGTATACGGCGTCCCTGGCCAA
GTCGTGGGTCCGACGGCGGCGGCGGCGGCGGTGGCGGCGGTGGTGCCGGG
GGCGGGGGGCGCCGACGGGACTGCTGGTTCTACGCTGTTTCCTAAAACGG
AGATCGAGATTGAAGGTGGTGGTGCTGGCGGTGTTGGTGGTGTTGGTGGG
GGTGGTGTTGAGAGAGTAGGAGGGGAGGTTTCCGCGGCGTACTCTGCAGC
AACTACAGCAGCGGTGGCCGAGGCAATGGCAATGGAAACAGCGCGTGAGG
CTGCTGCTACTGTGCAGGCGCGTGCGCAGCCCGTGAAATCGGCGACGGTG
GCAGCGGCAGAGAGTAACCTCCCTACCCAGCAGCAACAGCAGCAACAGCA
GCAGATTCACCTTCAGCTTCAGCATCAGCACCAGCAACACCTACAGCAGC
AGCAGCAGCACCTGTACCAGCAGCAGGAGCAGCAGCCGCAGAAACAGCAG
CATCAGCACCGCCCCTCCACTCCCCTGGCATCTGGGGGTCTTTTTTCTCC
CGCTGGGGACGCGCCGGGCCTTCCCCCCGCTTGCTCGGATCCTGTCACGA
CTGGTGCGCCTCCCGTTTCCGCTGTTGCGGGAACAGCGGCCGCAGCGGGC
TCGCGTGTGTACTTACCACCTTCGTCGATGGTGGTGCCCGGGTCTAGCGG
TACAGCCACCGCGGCCGCTGCTGTAGTGAAATCGGCAGCGGCGGCGACTG
CGGCGGCGGCGGTGGCTGTGAGCCAAGCCGACCGGTTGGGGGGTGTTGTG
GTCACACCGTCTGTCTTTTCCTCGGAGGGACAGCGGCAGCAAGAGCAGCA
GCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGGG
AGCAGGAACAGCAGCTCCAGCTTCAGCTCCGGCAGCGGCTCCAGCAACTC
CAGCAGCAACATCAACAACTACAGCAGGATCAGCAGCAGCGGCAACAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAACAAC
AACAACCGCAGCAGCAGCAGCAACAGATTCTGCCGCGGCTGTCGATGCTT
GAGCCTGGGAAGGGGAGCTACTTAGACCCAGCGGCATGGGGAGCTATTTC
GCAGTGGGCTGGGGGGAGCGTGGGTGGCGGCGCCATCGGCGGGGGCGGTG
GAACTGCCGTAGATTCGCGCACGGCGGGGTCGCCGGTGAGTATGCGTACC
AATTTATTTTGTTTCAATGCACCATACCGCCGTATTCAAACGCTGCGGCC
GTGATTGGGCGTGGCTTCACGGCTACTACGCGGGGGCATAGTGATCAGAA
TCCACGTTGGACCAAAACCACGTATTCGCCTATCCTCATGAACCATGTTC
GGTCCTGATTACTACCTGGTATGTTCCCACGTACCACTCTGTCCCATTTT
ATAAGAAACGGTTTTACGCTAGTTGTTAAAACCAAACGGGTGATTATATT
CCGGGGCAGAGTGGTAGTAGTTTTTGGTGGGAAGCTGGAGTCACGCCAAC
AGTCGAGCAGACCCCACCCCCCCCCGCACTCCCCGGATGGGGGGGGGGGG
GGGAGCCCGCCGGAGGCTGATTTACGCTGTTTGGCGTAGCGTTACACACA
GAAGAGCATGATGAAACCAAGCTCTTAGTCATCGTGCGACTCATTATTAT
TCCTTCAAACAACGAACAACTCCAAAAACCCAAATAGTTGAATAGTTGAC
ACCGCTGCGACTAAATAATGTCTAGCCAACTAAAAACTAGTAGGCGCCTT
ATACTCGGGTTGGTAATCGGCCAACTCACAGCCTTATAGCCCTTTTAGAG
CTGCAGTCCCGTTTTAGGGATAAACCACTCAAGTTCCGAGTACTTCGTCC
CTGAGACGTGAGTGCAATCCTGGACGGATTAACTCGACACTCTAGATAGG
CCGTTGTCACATACATGTACACGAGCGACCTCAAACCAATGCCCAAGTAG
GTTTGTCCCGCCAAACGTGGTGCGTCCTAAAAAAACGTGAGGCGTCTCCT
AAAAAAACGTGGGTGCACTTGTAGCGGGGCGACGTCAGAAAAAGCTCCTC
TGGAAAATTCTGGTGGGCCAGGAAAAGCCACAGCATTCAAGCGAGGACAG
ACGCCGCTACTACAAGAAGCCACTTCCCCGCTGTGAATATGCAGGCACGG
CCGCTCAGTTTGTTGTGTATTCATTCGCTGTTTAACATACAGTAGTAGGG
AGCTCCTTTGTTGGGACCCCATAGAATGCGTTCGGGGTTGCAGGTCTCCT
ATTTCTAGGTTCCAACATTCCTTGTCGGGAGTTGGTGCCGGCCCCGTACC
GTCAGTAATGGACGCAATGGTGGGCAGAAATTTGAGGTCCCGTATGTACC
GTTTTATCTTACCGTGGGGTCTGTTCAAGGGGGGAACCTACTGTACTGCT
GTAGTTGTAGGTGTGAGGGTAGGCGTGTGGGCTGTGCGCGAAGGGGATGG
GGTGGGGGTGGGAGAGGGGAGGGTCTGTGGAGAGGGGGGCATGTGTGCGG
TGGGGTGTGATGGGATCATTGATGGGAGGTGCGGTGTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGTTGGGGTGTTTGTTGTTGGTGGTGGTTGTTGC
TAGCGTTGTCGTTGTTGAATAGGGTTGCTGAAGACGTTGTGGTTGTAGGT
TTGCTTGTCGTCATCGTTGAAGTTTTTCATGGTTGTTTTCCCCCCGTTCT
TCGCTTCCTCTTTTTCGTTTCGATGCTCGCCCGTGCTGTCTGCTCTTTCC
ACTTCCCCCCTCCTCCCTAGCTGCAAACATCGAAGCAGCTCGACCAAATA
ATGGCAGCGGCCAGCAGCGCGCTCAGAAGAGAGGGGGAAGGCACAGCTGG
ACCACAGCGCGAAAACGGCGGCGGCGGTGGCGGCGGTGGCGGAGGCGTTT
CCACAGTGGGGTGGCGCCAAAGCCAACCCGCTCCCGCCTCCTCCTCCCCC
ATCCCTCCCTCTTCCCTCCTCTTCCCCTCCACGCCTGCCGCGCCGGGCCT
CGCTTCTGCCCCCCCTCTTCTCGTAGTATCGACGCCTCCCAGACAGATCC
ATAGTGCGGCGTTTTCTTCAGGGGAAAGCGGGGGCGGCGGGACAGGTGGC
GGGGAGGCGGTGGTGGGAGGGGGGCGCTGGGGAGTGGGTTCGGCGGACGG
GTTGCCGGAGGCGTTTCCTCTGGCGGGGATGACCTTCGAGGGAGTGTTCT
CTCCGTCCCAGGTAGGTTGGTTGGTTCGGTTCGGTTCGGTTCAGTTCGGG
TCCGGTTTGGTGAGGTTTGGTGAGGTCGATTTGGGTTGGTTGAAGTTCGG
GTGGTTGGTTACCTGGTTGGTCGATTCTAGTGATTTGTTGGTCCGGTTGG
CGTTTTTGGTTGCTTGGTTGGTTGCTCGGTTTGTTGTTCGGTCGCTTCGT
CGGTTAGCTGATTGGTTGGTTAGTTAGTTGCTTTGTTAGCAAGTTGATTG
GGTCTGTCCAGACCATCTGCTCGTTCCAGTTTTGACTGGTGTGTCGTCTG
GTCCGTTTGTTTCGCCCAAATATTTCTCGTCTGTAACATTTCACGAAGGC
TGGGTTTGATGTGTGTTGATTCGATGCCCCGTGAAGATGAAGGTTGGCGC
CGCCTCAACTGCGTACGCTGCTTTCGCCTTCCCTCAGTGCTGAGCAGTCG
GCCCTCCGCATTGAATGCCGCCAGTTTTTCTGCAAGTTATTAACGCCTTT
GAGATTTTAGAGGGAAAACTGTGCCGCAACACAATCGACGATCGTGCCTG
GCATCGGCTGCGCACCGCAGCAGTCTGGACTGCTGGCGTGGGAGGTGTTT
CCGGAGTGCGACGTAGGGAGATGTAGGTCCCTCATGCGCGCCGCGTGGTG
ATTCTTGCACACGTCCCGACAGATAACCGATTACCGCGCAATTATCTAGA
TCTTTCAGGGCAGCTAGGTTCCTCATCTGTAAGGTCTACTGCTGTAGCTC
ATGTTGGAAGGTGGGAGCCGAATAGTCTTGCATGATCTATATATACACTA
GAGCATGTGTATTGGGTTGGATCTGTACTGCTGTAAAAATCCTGCGCAAT
AAAATTATCATATCGGCAGGCTAGGATCTAGATGATCTGCAGTAGACAGA
TAGATAGATGATGATCTATCGGACTCGTGGATGATTGTACGGCTGATGGC
TCTTGCCGGATTGTTGATGAGACTGCACTTGGAGTTTTGTTTTCGGTCGA
TGTACCCGCCCCCCACAAAGGGCTTGAGCAGACCTCCCATCTCAAAAGCC
CCCCTTCCTCCCCTTCTCTCCCCCCCCCCCTCTCCCCACTCCTCCCTCGT
CCTCCTCCATCTTCACTTCGGCCGTTGCCGCGAAACCTGATGTTATCCTA
ACGGGAAACTCGACGGATTATCAGGAGCGCCACAAGCTAGCCCCGCTGTA
CAACAACAGCAATAGCAGCAGCGCCGCCGCCACCACCGCCGCGACCATCG
CCACCACCGCCACCACCACCACCACCACCACCAACGCCACCGTTGACTAC
GTTGGTGGCGGCGGCGGCAACGGTGGTGACAATAGCAACAGCTCCCCCGC
GGCCACCCTCGCTCTGGTCGGCCGAAAAGGTGGCGGATTGCCTTTGCCTG
CCACTGCAGCCGCGATAAAAGCCGCGGCCATGGAGCTGGACGTGCTTGAC
ACCCCCATCCCTACCCCTCCCCTCGTGTCGCCGGCAGGAGGGGCGGGGTC
TAGAGAGGGGGCGGGGGCGAGGGAGGGAGCGGGGGCAAGGGCGGGTGTGG
TGACGGACGCGATGGCGACGGTGACGGCGGCGGTGCCTGGCTTCCTTGTT
GGCGAGCCGGGTCTCGCTGCTGCTGGTGCTGGTGGGGGTGATGGTGGTGG
TGCTGCTGGGGATGTCGCTGGCGCTGGTGGTGCCGCTGGAGGGCTAGGAG
ACAGCAGGTAGGCTCTTAGTCGTGCGCTCTTATGGTAGGGTATGGTATGG
TATGGTATGGCATGGTATGGCATGGTGTGGTATGGTATGGTATGGTACGG
TATGGTATGGAATGGTATGGTATGGTGTGGTATGGTATGGTATGGTATAT
TGTGGTGTGGTGTGGTGTGGTATGGTATGGTATGTTATGGTATGTTATGG
TATGGTATGGCATGGTATGGTATGGTATGGTATGGTATGGTATGGCATGG
CATGGTATGGCATGATATGGCATGGCGTGGTATGGTATGGTATGGTATGT
TATGGTATGGTATGGTGTGGTACGATAATACTTATTCGCACGTATGATAG
TTTTGTTGTAGTTGCTGTTTTCTCTCGTGCGCGCGTTTTAGCGGCTGTCT
GGCGGACAAAACATTGGTGTTCTCGTTCGGTTTTTGCTCCTCACGGACAC
GTGGACTTTGCTTTCATGTCGGTATCCTCTCGCCGTAGACGGGGAAGGGG
AAGGGTGGGAGAAGAGGGGCTCACTCAAGGGGAGTAGACGACACGTTTGA
GCGATGTATATACTTTCTTTTCTTGTTGTCGGGGACATCTTTTTCCTGTT
CGGCCGTAAAAGTGCTCACGCCCCGGGGCTCCAATTGGGAACTTTGACCA
TCCCCCCCCCCCCCCTCTATCACTCCCGGCTTTCCCCCTCGTGTTTATCC
ACATTGCTATCGCTGCCACCATACCGTTGCCACCACCCCCCACCACCGCC
ACCACCATCACAATAACCACAATCACCCCCTCTCCCTCGCTTGACACGGC
CACCGCCGCCACCACGATTACCGGCACGACGACGAGCAGGAACACCAAAG
CCGCTGTCTACGCGCGATTCTTGCGAGACCCTACGGGGGTGGCGCCCCCC
CCTTCGGACGAAACCGTCGCCTTGCGCTTCGCTGGGGAGGCACAAGCGGC
GCAACCGGCCCAAGCGGCACAACCGGCCCAACCAGCCCAACCGGCGCAAC
CGGCACAACCGGAGCAACCGCTGCAAGCGGTTCAAGCAGGCGGTAGCGTC
GGCGGGGGCGGAGGTGGGGGCGGTGACTGTGATGGCGGCGGTGGGGGGAT
AAATGCGGTGGCAGCGGCAGCAGCAGCGAGCGCCGCAATGATGGTGGCGG
CGAAAGGGGCGGGAGCTTCCCATCACAGTGGTGCTGGGTCTGCTGGCGAT
GCGCTGGATGTTGTCGCCATGGGGGAGGACTTGTCCGATGAGGTGTGCTC
AGCGGAGGGTGGGATGGGAGGGAGGGAGGGAGGGAAGGCAGAGGGGAATG
GAGTGTGAGGGGTGATCCAAAGAGTATTTTTGCTGGGGAGGGACGGAGGG
AGGAAGAGAAAATACGTCTGTTGACGCAGCTGCTCGGGATCTGTATTTTG
TACCGATCTGTTCGAAAATATAAGGACCGCCTGGGTCTCAACAGGAGTAC
TCAAAGGGTCCCTTCATTTTCGGACAGAGTTGTACTACAAGTAAGAGTAA
CAAAGGACGGAGGAGACAGTCGGCGAGAAGGCGACCTTGGAGCGATAAAT
TCTCTCCCTCCCTTCCCCCGCCCGTCCCTCCCCCCGCCAACCCCACCCCT
CGCCCCCACCCCCACCTCCTCGCCCTTAACCCCCCCCAAACCCCATCCCG
ACACCGCCCTCAACCTCACATCCAACGCCTACCCCCGTACCCCCACCCCC
CTCCCCCCACCCCCAAACGTTTTTTTCTCTGGGGTTTCCAGGCGAAAGCT
TTGGCGGAGGAGGGGCTACTTGACCTCGTGCGGGATGCTTGGGGGGAGGA
GACGACGGATCGGGCGCACGCCTATCTGGAGCAGGATGCGCTGCCCTACC
TCCCCATCGACGGCCGGGCGTTCGCTCTGGCTGTGGAGGGGAGGCTGGAA
CCGGGGGGAGAGCTCGAGACTAACTACGGGAAGGCCGCTGTTGAGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10960:1127..9374-

>mRNA_M-pyrifera_M_contig10960.2015.1 ID=mRNA_M-pyrifera_M_contig10960.2015.1|Name=mRNA_M-pyrifera_M_contig10960.2015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4032bp|location=Sequence derived from alignment at M-pyrifera_M_contig10960:1127..9374- (Macrocystis pyrifera P11B4 male)
ATGGACGCCGGCCGGGCTGCGGCTGGACTTCCGGTGGCAGACTGGTCCGA
GTCCCACATGGTTAATGTTCGCCTCGTGGTGGACGTGCTTATTGCCCTCG
GGCTGGTGAAGTCGGATTACAACACGGTGGAGCAGGCAGGGGGGTGGCCC
ATGGATGTACACCCCCCCAGTGAAGCTCACGCAGGATGGACGCCGGCCGG
GCTGCGGCTGGACTTCCGGTGGCAGACTGGTCCGAGTCCCACATGGTTAA
TGTTCGCCTCGTGGTGGACGTGCTTATTGCCCTCGGGCTGGTGAAGTCGG
ATTACAACACGGTGGAGCAGGCAGGGGGGTGGCCCATGGATGTACACCCC
CCCAGTGAAGCTCACGCAGGCGCGCCAGCCCCGTGCTTTTGCTCCTCCGT
CATGCGGCGCGCCGTCGCCCGCCACACGAAGATGGTAGCCCCCTCCATGC
CCGCCACGTTGCCTACACTCCCGGCCTCCTTCCCCATGGACCCCTTCCAA
CTCGGCATCCCCTGGAACCCCGGCTCCCCCTCGAACGCTGGCGTCGTTTC
GTCGGCACGCGCCCCGGTCGGTAATGCAGCTGTATACGGCGTCCCTGGCC
AAGTCGTGGGTCCGACGGCGGCGGCGGCGGCGGTGGCGGCGGTGGTGCCG
GGGGCGGGGGGCGCCGACGGGACTGCTGGTTCTACGCTGTTTCCTAAAAC
GGAGATCGAGATTGAAGGTGGTGGTGCTGGCGCGCGCCAGCCCCGTGCTT
TTGCTCCTCCGTCATGCGGCGCGCCGTCGCCCGCCACACGAAGATGGTAG
CCCCCTCCATGCCCGCCACGTTGCCTACACTCCCGGCCTCCTTCCCCATG
GACCCCTTCCAACTCGGCATCCCCTGGAACCCCGGCTCCCCCTCGAACGC
TGGCGTCGTTTCGTCGGCACGCGCCCCGGTCGGTAATGCAGCTGTATACG
GCGTCCCTGGCCAAGTCGTGGGTCCGACGGCGGCGGCGGCGGCGGTGGCG
GCGGTGGTGCCGGGGGCGGGGGGCGCCGACGGGACTGCTGGTTCTACGCT
GTTTCCTAAAACGGAGATCGAGATTGAAGGTGGTGGTGCTGGCGGGACAG
CGGCAGCAAGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACCGGGAGCAGGAACAGCAGCTCCAGCTTCAGCTCCGGC
AGCGGCTCCAGCAACTCCAGCAGCAACATCAACAACTACAGCAGGATCAG
CAGCAGCGGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAACA
ACAACAGCAGCAACAACAACAACCGCAGCAGCAGCAGCAACAGATTCTGC
CGCGGCTGGACAGCGGCAGCAAGAGCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCACCGGGAGCAGGAACAGCAGCTCCAG
CTTCAGCTCCGGCAGCGGCTCCAGCAACTCCAGCAGCAACATCAACAACT
ACAGCAGGATCAGCAGCAGCGGCAACAGCAGCAACAGCAGCAGCAGCAGC
AGCAGCAACAACAACAACAGCAGCAACAACAACAACCGCAGCAGCAGCAG
CAACAGATTCTGCCGCGGCTCTCGACCAAATAATGGCAGCGGCCAGCAGC
GCGCTCAGAAGAGAGGGGGAAGGCACAGCTGGACCACAGCGCGAAAACGG
CGGCGGCGGTGGCGGCGGTGGCGGAGGCGTTTCCACAGTGGGGTGGCGCC
AAAGCCAACCCGCTCCCGCCTCCTCCTCCCCCATCCCTCCCTCTTCCCTC
CTCTTCCCCTCCACGCCTGCCGCGCCGGGCCTCGCTTCTGCCCCCCCTCT
TCTCGTAGTATCGACGCCTCCCAGACAGATCCATAGTGCGGCGTTTTCTT
CAGGGGAAAGCGGGGGCGGCGGGACAGGTGGCGGGGAGGCGGTGGTGGGA
GGGGGGCGCTGGGGAGTGGGTTCGGCGGACGGGTTGCCGGAGGCGTTTCC
TCTGGCGGGGATGACCTTCGAGGGAGTGTTCTCTCCGTCCCAGCTCGACC
AAATAATGGCAGCGGCCAGCAGCGCGCTCAGAAGAGAGGGGGAAGGCACA
GCTGGACCACAGCGCGAAAACGGCGGCGGCGGTGGCGGCGGTGGCGGAGG
CGTTTCCACAGTGGGGTGGCGCCAAAGCCAACCCGCTCCCGCCTCCTCCT
CCCCCATCCCTCCCTCTTCCCTCCTCTTCCCCTCCACGCCTGCCGCGCCG
GGCCTCGCTTCTGCCCCCCCTCTTCTCGTAGTATCGACGCCTCCCAGACA
GATCCATAGTGCGGCGTTTTCTTCAGGGGAAAGCGGGGGCGGCGGGACAG
GTGGCGGGGAGGCGGTGGTGGGAGGGGGGCGCTGGGGAGTGGGTTCGGCG
GACGGGTTGCCGGAGGCGTTTCCTCTGGCGGGGATGACCTTCGAGGGAGT
GTTCTCTCCGTCCCAGGAGCGCCACAAGCTAGCCCCGCTGTACAACAACA
GCAATAGCAGCAGCGCCGCCGCCACCACCGCCGCGACCATCGCCACCACC
GCCACCACCACCACCACCACCACCAACGCCACCGAGCGCCACAAGCTAGC
CCCGCTGTACAACAACAGCAATAGCAGCAGCGCCGCCGCCACCACCGCCG
CGACCATCGCCACCACCGCCACCACCACCACCACCACCACCAACGCCACC
CTGGACGTGCTTGACACCCCCATCCCTACCCCTCCCCTCGTGTCGCCGGC
AGGAGGGGCGGGGTCTAGAGAGGGGGCGGGGGCGAGGGAGGGAGCGGGGG
CAAGGGCGGGTGTGGTGACGGACGCGATGGCGACGGTGACGGCGGCGGTG
CCTGGCTTCCTTGTTGGCGAGCCGGGTCTCGCTGCTGCTGGTGCTGGTGG
GGGTGATGGTGGTGGTGCTGCTGGGGATGTCGCTGGCGCTGGTGCTGGAC
GTGCTTGACACCCCCATCCCTACCCCTCCCCTCGTGTCGCCGGCAGGAGG
GGCGGGGTCTAGAGAGGGGGCGGGGGCGAGGGAGGGAGCGGGGGCAAGGG
CGGGTGTGGTGACGGACGCGATGGCGACGGTGACGGCGGCGGTGCCTGGC
TTCCTTGTTGGCGAGCCGGGTCTCGCTGCTGCTGGTGCTGGTGGGGGTGA
TGGTGGTGGTGCTGCTGGGGATGTCGCTGGCGCTGGTGCGGTTCAAGCAG
GCGGTAGCGTCGGCGGGGGCGGAGGTGGGGGCGGTGACTGTGATGGCGGC
GGTGGGGGGATAAATGCGGTGGCAGCGGCAGCAGCAGCGAGCGCCGCAAT
GATGGTGGCGGCGAAAGGGGCGGGAGCTTCCCATCACAGTGGTGCTGGGT
CTGCTGGCGATGCGCTGGATGTTGTCGCCATGGGGGAGGACTTGTCCGAT
GAGCGGTTCAAGCAGGCGGTAGCGTCGGCGGGGGCGGAGGTGGGGGCGGT
GACTGTGATGGCGGCGGTGGGGGGATAAATGCGGTGGCAGCGGCAGCAGC
AGCGAGCGCCGCAATGATGGTGGCGGCGAAAGGGGCGGGAGCTTCCCATC
ACAGTGGTGCTGGGTCTGCTGGCGATGCGCTGGATGTTGTCGCCATGGGG
GAGGACTTGTCCGATGAGGCGAAAGCTTTGGCGGAGGAGGGGCTACTTGA
CCTCGTGCGGGATGCTTGGGGGGAGGAGACGACGGATCGGGCGCACGCCT
ATCTGGAGCAGGATGCGCTGCCCTACCTCCCCATCGACGGCCGGGCGTTC
GCTCTGGCTGTGGAGGGGAGGCTGGAACCGGGGGGAGAGCTCGAGACTAA
CTACGGGAAGGCCGCTGTTGAGGTGGCGAAAGCTTTGGCGGAGGAGGGGC
TACTTGACCTCGTGCGGGATGCTTGGGGGGAGGAGACGACGGATCGGGCG
CACGCCTATCTGGAGCAGGATGCGCTGCCCTACCTCCCCATCGACGGCCG
GGCGTTCGCTCTGGCTGTGGAGGGGAGGCTGGAACCGGGGGGAGAGCTCG
AGACTAACTACGGGAAGGCCGCTGTTGAGGTG
back to top