mRNA_M-pyrifera_M_contig86588.20147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86588.20147.1
Unique NamemRNA_M-pyrifera_M_contig86588.20147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: A0A0V0RCP1_9BILA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0V0RCP1_9BILA)

HSP 1 Score: 189 bits (480), Expect = 4.200e-59
Identity = 100/147 (68.03%), Postives = 120/147 (81.63%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  SAKD R GRAAS NIIP+STGAAKAVGKV+P + GKLTGMAFRVPT+DVSVVDLTVRL K A+ D I AAIK+ SEG MKG++ +T++  VS+DF G   S IFD  AGIALNDNF KL+++YDNE+GYS R++DL +HI+K
Sbjct:   13 TVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKKATYDQIKAAIKEESEGKMKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHIAK 159          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: E9RK94_CABCA (Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) homolog (Fragment) n=1 Tax=Cabomba caroliniana TaxID=4426 RepID=E9RK94_CABCA)

HSP 1 Score: 189 bits (481), Expect = 5.990e-59
Identity = 100/145 (68.97%), Postives = 118/145 (81.38%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHI 435
            TVD  S+KD R GRAA  NIIP+STGAAKAVGKV+P + GKLTGMAFRVPT+DVSVVDLTVRL KGAS D I AAIK+ SEG +KGV+ +TDE  VS+DF G + S IFD  AGIALNDNF KL+++YDNE+GYS R++DL  H+
Sbjct:   33 TVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKGASYDQIKAAIKEASEGKLKGVLGYTDEDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIKHV 177          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: K3YIG5_SETIT (Glyceraldehyde-3-phosphate dehydrogenase n=7 Tax=Poaceae TaxID=4479 RepID=K3YIG5_SETIT)

HSP 1 Score: 194 bits (492), Expect = 1.300e-58
Identity = 104/147 (70.75%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  SAKD R GRAAS NIIP+STGAAKAVGKV+PE+ GKLTGM+FRVPT+DVSVVDLTVRL KGAS +DI  AIK  SEG +KG+M +TDE  VS+DFTG + S IFD  AGIALNDNF KL+++YDNE+GYS R+VDL  H+ K
Sbjct:  189 TVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRLQKGASYEDIKKAIKAASEGPLKGIMGYTDEDLVSTDFTGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSNRVVDLIRHMFK 335          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: B7FL18_MEDTR (Gp_dh_C domain-containing protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=B7FL18_MEDTR)

HSP 1 Score: 189 bits (480), Expect = 1.990e-58
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  SAKD R GRAAS NIIP+STGAAKAVGK++P + GKLTGMAFRVPT+DVSVVDLTVRL K A+ D I AAIK+ SEG++KG++ +T++  VS+DF G T S IFD  AGIALNDNF KL+++YDNE GYS R+VDL +HI+K
Sbjct:   61 TVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKMLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDNFVKLVSWYDNELGYSTRVVDLIVHIAK 207          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: A0A453P110_AEGTS (Gp_dh_C domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453P110_AEGTS)

HSP 1 Score: 187 bits (475), Expect = 8.630e-58
Identity = 100/145 (68.97%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHI 435
            TVD  S+KD R GRAAS NIIP+STGAAKAVGKV+PE+ GKLTGMAFRVPT+DVSVVDLTVRLAK A+ D I AAIK+ SEG++KG++ + DE  VS+DF G   S IFD  AGIALNDNF KL+++YDNE+GYS R+VDL  H+
Sbjct:   52 TVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTVDVSVVDLTVRLAKPATYDQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHM 196          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: A0A6M2A1S2_9BACT (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2A1S2_9BACT)

HSP 1 Score: 191 bits (485), Expect = 1.470e-57
Identity = 100/147 (68.03%), Postives = 115/147 (78.23%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  S KD R GRAA  NIIP+STGAAKAV  VIPEV GKLTGMAFR+PT+DVS VDLTVR+AK  S  +I AA K  SEGSMKG++ +TDEP VSSDF GS YSCIFD  AGIALN  F+KL+A+YDNEFGY+ R+VDL  ++  
Sbjct:  188 TVDGPSKKDFRGGRAAGMNIIPSSTGAAKAVALVIPEVKGKLTGMAFRIPTIDVSAVDLTVRVAKDTSYQEICAAYKNASEGSMKGILQYTDEPVVSSDFIGSHYSCIFDQEAGIALNSRFYKLVAWYDNEFGYATRVVDLLKYMES 334          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: UPI00053C0ABD (glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0ABD)

HSP 1 Score: 191 bits (484), Expect = 2.080e-57
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  S KD R GRAAS NIIP+STGAAKAVGKV+PE+ GKLTGMAFRVPT+DVSVVDLTVRL+K AS D I +A+K+ SEGSMKG++ +T++  VSSDF G + S IFD  AGIALNDNF K++++YDNE+GYS R+VDL  HI+ 
Sbjct:  189 TVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTVDVSVVDLTVRLSKNASYDSIKSALKEASEGSMKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNDNFVKIVSWYDNEWGYSNRVVDLVRHIAS 335          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: A9PA00_POPTR (Glyceraldehyde-3-phosphate dehydrogenase n=15 Tax=Saliceae TaxID=238069 RepID=A9PA00_POPTR)

HSP 1 Score: 191 bits (484), Expect = 2.140e-57
Identity = 102/147 (69.39%), Postives = 120/147 (81.63%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  S+KD R GRAAS NIIP+STGAAKAVGKV+P + GKLTGMAFRVPT+DVSVVDLTVRL KGAS +DI AAIK+ SEG MKG++ +TDE  VS+DF G   S IFD  AGIALNDN+ KL+A+YDNE+GYS R+VDL  +I+ 
Sbjct:  189 TVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKGASYEDIKAAIKEESEGKMKGILGYTDEDLVSTDFIGDNRSSIFDAKAGIALNDNYVKLVAWYDNEWGYSTRVVDLITYIAS 335          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: A0A0L0T0E9_ALLM3 (Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T0E9_ALLM3)

HSP 1 Score: 191 bits (484), Expect = 2.380e-57
Identity = 100/147 (68.03%), Postives = 119/147 (80.95%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  S KD R+GR A+ NIIPASTGAAKAVGKVIP + GKLTGMAFRVPT DVSVVDLTVRLAK A+ D I A IKQ S+ S+KG++ +T++  VS+DF G ++S IFD  AGIALND F KLI++YDNEFGYSCR++DL  HI+K
Sbjct:  187 TVDGPSGKDWRSGRGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVRLAKPATYDQIKAVIKQASQSSLKGILGYTEDAVVSNDFVGDSHSSIFDADAGIALNDTFVKLISWYDNEFGYSCRVIDLVKHIAK 333          
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Match: C8KI26_BRAPC (Glyceraldehyde-3-phosphate dehydrogenase n=3 Tax=Brachionus TaxID=10194 RepID=C8KI26_BRAPC)

HSP 1 Score: 190 bits (483), Expect = 2.710e-57
Identity = 99/147 (67.35%), Postives = 117/147 (79.59%), Query Frame = 1
Query:    1 TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVPTLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDFTGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK 441
            TVD  S KD R GR A+ NIIP+STGAAKAVGKVIPE+ GKLTGMAFRVPT DVSVVDLTVRLAK A  D++ AAIK  SE  +KG++ +T++  VSSDF G  +S IFD  AGI+LNDNF KL+++YDNEFGYSCR+VDL  H+ K
Sbjct:  184 TVDGPSNKDWRGGRTAATNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTADVSVVDLTVRLAKPAKYDEVKAAIKHASENELKGILAYTEDEVVSSDFIGDHHSSIFDAKAGISLNDNFVKLVSWYDNEFGYSCRVVDLIQHVYK 330          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86588.20147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V0RCP1_9BILA4.200e-5968.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
E9RK94_CABCA5.990e-5968.97Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) h... [more]
K3YIG5_SETIT1.300e-5870.75Glyceraldehyde-3-phosphate dehydrogenase n=7 Tax=P... [more]
B7FL18_MEDTR1.990e-5868.03Gp_dh_C domain-containing protein n=3 Tax=Pentapet... [more]
A0A453P110_AEGTS8.630e-5868.97Gp_dh_C domain-containing protein n=2 Tax=Aegilops... [more]
A0A6M2A1S2_9BACT1.470e-5768.03Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=C... [more]
UPI00053C0ABD2.080e-5768.03glyceraldehyde-3-phosphate dehydrogenase 1, cytoso... [more]
A9PA00_POPTR2.140e-5769.39Glyceraldehyde-3-phosphate dehydrogenase n=15 Tax=... [more]
A0A0L0T0E9_ALLM32.380e-5768.03Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=A... [more]
C8KI26_BRAPC2.710e-5767.35Glyceraldehyde-3-phosphate dehydrogenase n=3 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86588contigM-pyrifera_M_contig86588:2..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score196.4
Seed ortholog evalue9.2e-48
Seed eggNOG ortholog4555.Si014034m
KEGG rclassRC00149
KEGG koko:K00134
KEGG ReactionR01061
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glyceraldehyde-3-phosphate dehydrogenase
EggNOG OGs37HSA@33090,3GAGX@35493,3I46A@38820,3M3W9@4447,COG0057@1,KOG0657@2759
EC1.2.1.12
COG Functional cat.G
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.203768-CDS-M-pyrifera_M_contig86588:1..4451622816775.203768-CDS-M-pyrifera_M_contig86588:1..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86588 2..445 +
1692278171.085477-CDS-M-pyrifera_M_contig86588:1..4451692278171.085477-CDS-M-pyrifera_M_contig86588:1..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86588 2..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86588.20147.1prot_M-pyrifera_M_contig86588.20147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86588 2..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86588.20147.1

>prot_M-pyrifera_M_contig86588.20147.1 ID=prot_M-pyrifera_M_contig86588.20147.1|Name=mRNA_M-pyrifera_M_contig86588.20147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
TVDAASAKDLRAGRAASGNIIPASTGAAKAVGKVIPEVAGKLTGMAFRVP
TLDVSVVDLTVRLAKGASSDDIVAAIKQVSEGSMKGVMTWTDEPAVSSDF
TGSTYSCIFDVTAGIALNDNFHKLIAFYDNEFGYSCRLVDLALHISK*
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mRNA from alignment at M-pyrifera_M_contig86588:2..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86588.20147.1 ID=mRNA_M-pyrifera_M_contig86588.20147.1|Name=mRNA_M-pyrifera_M_contig86588.20147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig86588:2..445+ (Macrocystis pyrifera P11B4 male)
ACTGTAGATGCAGCCTCAGCAAAAGACTTGCGTGCAGGTAGGGCTGCGAG TGGAAACATCATCCCAGCGTCCACTGGTGCAGCCAAGGCAGTGGGAAAGG TGATTCCAGAAGTGGCAGGAAAACTCACAGGCATGGCATTCCGTGTGCCT ACTCTCGATGTATCCGTCGTTGATCTCACTGTGCGTCTCGCTAAGGGTGC ATCATCTGATGACATTGTAGCAGCCATCAAGCAAGTGTCTGAAGGCAGCA TGAAGGGTGTCATGACCTGGACAGATGAACCAGCTGTTTCCTCTGACTTC ACAGGCTCCACGTACTCTTGCATCTTTGACGTCACTGCAGGAATCGCACT CAATGACAACTTCCACAAACTCATCGCCTTCTATGACAATGAGTTTGGAT ACTCTTGCAGGCTTGTTGACCTTGCACTCCACATCTCCAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86588:2..445+

>mRNA_M-pyrifera_M_contig86588.20147.1 ID=mRNA_M-pyrifera_M_contig86588.20147.1|Name=mRNA_M-pyrifera_M_contig86588.20147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig86588:2..445+ (Macrocystis pyrifera P11B4 male)
ACTGTAGATGCAGCCTCAGCAAAAGACTTGCGTGCAGGTAGGGCTGCGAG
TGGAAACATCATCCCAGCGTCCACTGGTGCAGCCAAGGCAGTGGGAAAGG
TGATTCCAGAAGTGGCAGGAAAACTCACAGGCATGGCATTCCGTGTGCCT
ACTCTCGATGTATCCGTCGTTGATCTCACTGTGCGTCTCGCTAAGGGTGC
ATCATCTGATGACATTGTAGCAGCCATCAAGCAAGTGTCTGAAGGCAGCA
TGAAGGGTGTCATGACCTGGACAGATGAACCAGCTGTTTCCTCTGACTTC
ACAGGCTCCACGTACTCTTGCATCTTTGACGTCACTGCAGGAATCGCACT
CAATGACAACTTCCACAAACTCATCGCCTTCTATGACAATGAGTTTGGAT
ACTCTTGCAGGCTTGTTGACCTTGCACTCCACATCTCCAAGTAGACTGTA
GATGCAGCCTCAGCAAAAGACTTGCGTGCAGGTAGGGCTGCGAGTGGAAA
CATCATCCCAGCGTCCACTGGTGCAGCCAAGGCAGTGGGAAAGGTGATTC
CAGAAGTGGCAGGAAAACTCACAGGCATGGCATTCCGTGTGCCTACTCTC
GATGTATCCGTCGTTGATCTCACTGTGCGTCTCGCTAAGGGTGCATCATC
TGATGACATTGTAGCAGCCATCAAGCAAGTGTCTGAAGGCAGCATGAAGG
GTGTCATGACCTGGACAGATGAACCAGCTGTTTCCTCTGACTTCACAGGC
TCCACGTACTCTTGCATCTTTGACGTCACTGCAGGAATCGCACTCAATGA
CAACTTCCACAAACTCATCGCCTTCTATGACAATGAGTTTGGATACTCTT
GCAGGCTTGTTGACCTTGCACTCCACATCTCCAAGTAG
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