mRNA_M-pyrifera_M_contig8632.20107.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8632.20107.1
Unique NamemRNA_M-pyrifera_M_contig8632.20107.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8632.20107.1 vs. uniprot
Match: A0A6H5L6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.510e-6
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    2 AKRAYEELSLRSRENQNTQNAGLRFVAEEREKYRQRQTQDMMQRARER 145
            A +AYEE S R  ENQ++ NAGLR VAEE+EKYRQ+Q + M+Q A ER
Sbjct:  546 ANQAYEERSRRETENQDSTNAGLRLVAEEKEKYRQQQAEKMLQAASER 593
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8632.20107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6N4_9PHAE5.510e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8632contigM-pyrifera_M_contig8632:4087..5205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.2831423-CDS-M-pyrifera_M_contig8632:4086..42001622816773.2831423-CDS-M-pyrifera_M_contig8632:4086..4200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8632 4087..4200 +
1692278169.998638-CDS-M-pyrifera_M_contig8632:4086..42001692278169.998638-CDS-M-pyrifera_M_contig8632:4086..4200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8632 4087..4200 +
1622816773.2942154-CDS-M-pyrifera_M_contig8632:5025..52051622816773.2942154-CDS-M-pyrifera_M_contig8632:5025..5205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8632 5026..5205 +
1692278170.010626-CDS-M-pyrifera_M_contig8632:5025..52051692278170.010626-CDS-M-pyrifera_M_contig8632:5025..5205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8632 5026..5205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8632.20107.1prot_M-pyrifera_M_contig8632.20107.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8632 4087..5205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8632.20107.1

>prot_M-pyrifera_M_contig8632.20107.1 ID=prot_M-pyrifera_M_contig8632.20107.1|Name=mRNA_M-pyrifera_M_contig8632.20107.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
RQACVRGALAQVARKSEHPERRPAVRSGRKGEVQATPDARHDATRAGKKA
LEACGRRRRRQRRRRRNRRQHRRQNRRRDRRQNWRCIRRQIRRPSRR*
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mRNA from alignment at M-pyrifera_M_contig8632:4087..5205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8632.20107.1 ID=mRNA_M-pyrifera_M_contig8632.20107.1|Name=mRNA_M-pyrifera_M_contig8632.20107.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at M-pyrifera_M_contig8632:4087..5205+ (Macrocystis pyrifera P11B4 male)
CGCCAAGCGTGCGTACGAGGAGCTCTCGCTCAGGTCGCGAGAAAATCAGA
ACACCCAGAACGCCGGCCTGCGGTTCGTAGCGGAAGAAAGGGAGAAGTAC
AGGCAACGCCAGACGTGAGTGGGAAAAAGTGCTGGCGAACGGTGTTCACG
AACATGGGATGTGTCATTATCTACGGCAGATCATCTGCAAGTAGATCCCG
TATTTTCCGTCATGATAAGTTCTGCCAAGAGCTGTGTAATACAGGCCCCG
CTCGGCAGACCTGGGTGGGGCGCAAGAGCCGTGGCATACAGATCCCACGA
GAAAACAAAATCATGGGGCGATCTACTGCACGGTACGTAGATCGTCTGCG
ATTGGATCCTGTAATTTCCGTTCATGAGATGTTCCGCCAAGAGGCGTATG
ATACAGACTCCACTCGGCCAACGCGTGCGCAAGAGCCGTACCATACAGAC
CCCTACCCGGCAAGCTCTACACGGAATAGATAGATCATGAGCTGCTGTAG
ATCATCTATACTCTGTAGTTTCTGTTATTTTGAGACGTTTTGCCAAGAGC
CGTAAAAATACAGAACTCACCCGGCAGACGCGTGCGTAAAAATCTGTGTC
GTACAGATCCCTCCCGGCAATAAAAATATATGCGCCAGGGGTTTGTTAAG
AAGCGTGGAGGCGGCGACGGCGATGGGGGCGGGGGGGATATACCGTGCAC
GGCATATAGATTGAGTATCCTACCTGCCCTGAAAAAAAAATACGTACAAT
TGGTTCAAGAAAGGAGGATGTAATATGCCCTGATGTGTGCAAGCTATTAC
TTCTTCTGTTAGACGACTATTATTAATACCGCACGAATTCCAACACCCCT
CCTCGGTGATCGAGGGAGCACTCACGAACGCTCCGGTTGCTCGTTTGTCT
CCCCACCCCGGGATCCGCTCCCCGCCCCCCCCGGGATAGGCAAGACATGA
TGCAACGCGCGCGGGAAAGAAAGCTCTTGAAGCTTGCGGGAGACGGCGCC
GGAGACAACGTCGTCGAAGGCGAAATCGGAGACAACATAGAAGACAAAAT
CGCAGACGTGATCGGAGACAAAATTGGAGATGCATTCGGAGACAAATCCG
GAGACCAAGCCGGAGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8632:4087..5205+

>mRNA_M-pyrifera_M_contig8632.20107.1 ID=mRNA_M-pyrifera_M_contig8632.20107.1|Name=mRNA_M-pyrifera_M_contig8632.20107.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig8632:4087..5205+ (Macrocystis pyrifera P11B4 male)
CGCCAAGCGTGCGTACGAGGAGCTCTCGCTCAGGTCGCGAGAAAATCAGA
ACACCCAGAACGCCGGCCTGCGGTTCGTAGCGGAAGAAAGGGAGAAGTAC
AGGCAACGCCAGACCGCCAAGCGTGCGTACGAGGAGCTCTCGCTCAGGTC
GCGAGAAAATCAGAACACCCAGAACGCCGGCCTGCGGTTCGTAGCGGAAG
AAAGGGAGAAGTACAGGCAACGCCAGACGCAAGACATGATGCAACGCGCG
CGGGAAAGAAAGCTCTTGAAGCTTGCGGGAGACGGCGCCGGAGACAACGT
CGTCGAAGGCGAAATCGGAGACAACATAGAAGACAAAATCGCAGACGTGA
TCGGAGACAAAATTGGAGATGCATTCGGAGACAAATCCGGAGACCAAGCC
GGAGATAAGCAAGACATGATGCAACGCGCGCGGGAAAGAAAGCTCTTGAA
GCTTGCGGGAGACGGCGCCGGAGACAACGTCGTCGAAGGCGAAATCGGAG
ACAACATAGAAGACAAAATCGCAGACGTGATCGGAGACAAAATTGGAGAT
GCATTCGGAGACAAATCCGGAGACCAAGCCGGAGATAA
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