mRNA_M-pyrifera_M_contig86252.20097.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86252.20097.1
Unique NamemRNA_M-pyrifera_M_contig86252.20097.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Match: A0A7S1CDL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDL5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.070e-25
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   13 IMVVVRRLMQQMDAQGISSSEFSSLKEALEEDAEGALEVLKQLAMTRQFDAKQAARAVRAIGALSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAERENVCHRL 330
            +M  VR LM+ M A+G+  ++F  L   L E+A GA+E ++Q+AMT +FD KQA R V  +G +SPF+K EAAV +YP L + +SF LVL+ F+D A+R N+CHRL
Sbjct:  185 VMATVRELMRNMKARGVPDAQFQQLVSVLREEAVGAIESVRQVAMTHEFDVKQACRLVTLVGNVSPFDKAEAAVCMYPTLFNKDSFTLVLDLFDDAADRANICHRL 290          
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Match: A0A5A8C386_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C386_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 2.580e-23
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    4 QREIMVVVRRLMQQMDAQGISSSEFSSLKEALEEDAEGALEVLKQLAMTRQFDAKQAARAVRAIGALSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAERENVCHRL 330
            ++ ++  VR LM  M  +G+  +E   +  A++ D + A+  L+QLA+TR+FDAKQA   V  IG +SPF++VEAAV +YPALM+ ESF +VL  FEDD +++NVCHRL
Sbjct:  286 EQRLLAAVRMLMSDMSRRGVDDAELLQVTSAIDHDPDRAIAGLRQLAITRRFDAKQAFGIVSQIGRVSPFDQVEAAVLLYPALMNTESFHVVLAAFEDDDDKDNVCHRL 394          
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Match: A0A7S0K8Z3_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K8Z3_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 4.000e-23
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    4 QREIMVVVRRLMQQMDAQGISSSEFSSLKEALEEDAEGALEVLKQLAMTRQFDAKQAARAVRAIGALSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAERENVCHRL 330
            ++ ++  VR LM  M  +G+  +E   +  A++ D + A+  L+QLA+TR+FDAKQA   V  IG +SPF++VEAAV +YPALM+ ESF +VL  FEDD +++NVCHRL
Sbjct:  349 EQRLLAAVRMLMSDMSRRGVDDAELLQVTSAIDHDPDRAIAGLRQLAITRRFDAKQAFGIVSQIGRVSPFDQVEAAVLLYPALMNTESFHVVLAAFEDDDDKDNVCHRL 457          
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Match: A0A482RI71_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RI71_9ARCH)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-20
Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   13 IMVVVRRLMQQMDAQGISSSEFSSLKEALE---EDAEG--ALEVLKQLAMTRQFDAKQAARAVRAIGALSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAERENVCHRL 330
            +M  V+ LM +MDA G+  +EF +L E L    ED  G  AL+V++Q+++TR FD +QA   V  IG++SPF+++EAAV +Y  +M+ ES+ LVL  F+D  +R N+CHRL
Sbjct:   14 VMNSVQALMSKMDAHGVPDAEFRALLETLTRLTEDDMGDYALQVMRQMSLTRTFDVRQAREMVITIGSVSPFDQIEAAVLLYDKVMNKESYPLVLACFDDATDRANICHRL 124          
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Match: A0A7S2BL28_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL28_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.260e-8
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   25 VRRLMQQMDAQGISSSEFSSLKEALEE-----DAEGALEVLKQLAMTRQFDAKQAARAVRAIGALSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAERENVCHRL 330
            V+ LM  MD +G+S  +F  LK  L+      D  G    ++Q A +R + + Q    ++ +  ++PFE +E A  +Y  +++ +SF ++L  F+D A+R+N+ HRL
Sbjct:  110 VKSLMVDMDREGVSKDDFKLLKGILQNWDMDADEAGWFGTVRQFASSRAYTSHQGVELLQIMKQVNPFELIELACFLYDNILNRDSFQMLLNVFDDPADRDNIIHRL 216          
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Match: A0A7S1XQ49_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQ49_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-6
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  121 LEVLKQLAMTRQFDAKQAARAVRAIGA--LSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAERENVCHRL 330
            LE ++Q A  R F AKQA   +  +GA   + FE++E AV  Y  L++  SF LVL +F D ++REN+ HRL
Sbjct:  186 LETIQQFASNRHFLAKQAVELLTILGADGEAAFERMELAVFFYEKLLNKGSFQLVLNQFSDPSDRENILHRL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86252.20097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S1CDL5_9STRA2.070e-2550.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8C386_CAFRO2.580e-2348.62Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S0K8Z3_CAFRO4.000e-2348.62Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A482RI71_9ARCH2.530e-2045.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2BL28_9STRA1.260e-831.78Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S1XQ49_9STRA1.220e-644.44Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86252contigM-pyrifera_M_contig86252:452..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.8705213-CDS-M-pyrifera_M_contig86252:451..7661622816772.8705213-CDS-M-pyrifera_M_contig86252:451..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86252 452..766 -
1692278169.788477-CDS-M-pyrifera_M_contig86252:451..7661692278169.788477-CDS-M-pyrifera_M_contig86252:451..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86252 452..766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.8816159-UTR-M-pyrifera_M_contig86252:766..7811622816772.8816159-UTR-M-pyrifera_M_contig86252:766..781Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86252 767..781 -
1692278169.79982-UTR-M-pyrifera_M_contig86252:766..7811692278169.79982-UTR-M-pyrifera_M_contig86252:766..781Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86252 767..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86252.20097.1prot_M-pyrifera_M_contig86252.20097.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86252 452..766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86252.20097.1

>prot_M-pyrifera_M_contig86252.20097.1 ID=prot_M-pyrifera_M_contig86252.20097.1|Name=mRNA_M-pyrifera_M_contig86252.20097.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MVVVRRLMQQMDAQGISSSEFSSLKEALEEDAEGALEVLKQLAMTRQFDA
KQAARAVRAIGALSPFEKVEAAVSIYPALMHPESFALVLEEFEDDAEREN
VCHRL
back to top

mRNA from alignment at M-pyrifera_M_contig86252:452..781-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86252.20097.1 ID=mRNA_M-pyrifera_M_contig86252.20097.1|Name=mRNA_M-pyrifera_M_contig86252.20097.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig86252:452..781- (Macrocystis pyrifera P11B4 male)
TTGCAGCGTGAGATTATGGTGGTTGTGCGTCGTCTGATGCAGCAGATGGA TGCTCAGGGGATTTCTTCGTCAGAGTTTTCGTCTCTCAAGGAAGCTCTGG AGGAAGATGCAGAGGGGGCATTGGAAGTGCTGAAGCAATTGGCAATGACA CGGCAATTCGACGCAAAGCAAGCAGCAAGAGCTGTGAGAGCTATTGGCGC CCTCAGCCCCTTTGAAAAGGTAGAAGCGGCTGTGTCCATCTACCCCGCCC TCATGCACCCCGAATCCTTTGCTCTCGTCCTCGAGGAATTCGAAGACGAC GCAGAACGAGAAAACGTCTGCCATAGACTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86252:452..781-

>mRNA_M-pyrifera_M_contig86252.20097.1 ID=mRNA_M-pyrifera_M_contig86252.20097.1|Name=mRNA_M-pyrifera_M_contig86252.20097.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig86252:452..781- (Macrocystis pyrifera P11B4 male)
ATGGTGGTTGTGCGTCGTCTGATGCAGCAGATGGATGCTCAGGGGATTTC
TTCGTCAGAGTTTTCGTCTCTCAAGGAAGCTCTGGAGGAAGATGCAGAGG
GGGCATTGGAAGTGCTGAAGCAATTGGCAATGACACGGCAATTCGACGCA
AAGCAAGCAGCAAGAGCTGTGAGAGCTATTGGCGCCCTCAGCCCCTTTGA
AAAGGTAGAAGCGGCTGTGTCCATCTACCCCGCCCTCATGCACCCCGAAT
CCTTTGCTCTCGTCCTCGAGGAATTCGAAGACGACGCAGAACGAGAAAAC
GTCTGCCATAGACTCATGGTGGTTGTGCGTCGTCTGATGCAGCAGATGGA
TGCTCAGGGGATTTCTTCGTCAGAGTTTTCGTCTCTCAAGGAAGCTCTGG
AGGAAGATGCAGAGGGGGCATTGGAAGTGCTGAAGCAATTGGCAATGACA
CGGCAATTCGACGCAAAGCAAGCAGCAAGAGCTGTGAGAGCTATTGGCGC
CCTCAGCCCCTTTGAAAAGGTAGAAGCGGCTGTGTCCATCTACCCCGCCC
TCATGCACCCCGAATCCTTTGCTCTCGTCCTCGAGGAATTCGAAGACGAC
GCAGAACGAGAAAACGTCTGCCATAGACTC
back to top