mRNA_M-pyrifera_M_contig86164.20079.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86164.20079.1
Unique NamemRNA_M-pyrifera_M_contig86164.20079.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A8J7TWT5_9BACT (BlaI/MecI/CopY family transcriptional regulator n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TWT5_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.820e-15
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELDEE 258
            AYT AQTLL RL+ KG+V   + G A  +RP V R+ LL   L DLA    EG   PL+L LV     SPDD+   R+L+D+L+ E
Sbjct:   41 AYTTAQTLLTRLMAKGYVAADRTGPAHVYRPAVSRNELLQQRLTDLADEFCEGTTSPLVLALVEGSEFSPDDIARFRQLLDKLEAE 126          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A354GL25_9BACT (Transcriptional regulator n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GL25_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.450e-15
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELD 252
            AYT  QTLL RL  KG+V   + G A  ++  V RDAL+   L DLA +L  G   P+LL LV   R++ +D+QHLR+L+D+LD
Sbjct:   42 AYTTVQTLLQRLEAKGYVASDRAGAAHVYQATVSRDALVSRRLRDLADQLCGGTASPMLLALVEDGRLTNEDVQHLRRLLDQLD 125          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: UPI001E582F17 (BlaI/MecI/CopY family transcriptional regulator n=1 Tax=Stenotrophomonas sp. SY1 TaxID=477235 RepID=UPI001E582F17)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELDEEE 261
            A    +TLL RL++KG +E  K GR + + PLV+RDA +  E   L  RL +G+  PL+ +    RR+S DD+  LRKL++ELD+E+
Sbjct:   36 AEATVKTLLNRLLNKGAIEAQKQGRRYLYTPLVERDAWVLEESSSLLDRLFDGRVAPLVAHFSQHRRLSRDDVAQLRKLLEELDDEQ 122          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A142WTP7_9PLAN (Penicillinase repressor n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WTP7_9PLAN)

HSP 1 Score: 72.8 bits (177), Expect = 2.110e-14
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    4 YTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELD 252
            Y   Q LL RL  KG V R +DGR   FR  +DR   +G  L DLA  + EG   PLL  L+H+R +S +D+  LRKL+++L+
Sbjct:   43 YYTVQKLLERLEGKGLVTRDRDGRTHRFRAAIDRSQFVGDRLQDLADTVCEGSMAPLLTGLLHTRSISAEDVDVLRKLVEDLE 125          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A0R0ATG3_9GAMM (BlaI/MecI/CopY family transcriptional regulator n=1 Tax=Stenotrophomonas pictorum JCM 9942 TaxID=1236960 RepID=A0A0R0ATG3_9GAMM)

HSP 1 Score: 70.9 bits (172), Expect = 8.560e-14
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELDEEE 261
            A    +TLL RL++KG +   KDGR + + PLV RD  +  E   L  RL EG+  PL+ +    RR+S DD+  LRKL+++LD+E+
Sbjct:   37 AEATVKTLLNRLLNKGAIAAQKDGRRYLYSPLVQRDTWVLEESSSLIERLFEGRVAPLVAHFSQHRRLSRDDVAELRKLLEDLDDEQ 123          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A0Q4QNH6_9GAMM (BlaI/MecI/CopY family transcriptional regulator n=6 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A0Q4QNH6_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 3.430e-13
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELDEEE 261
            A    +TLL RL++KG +   K+GR + + PLV RDA L  E   L  RL +G+  PL+ +    R++S DD+  LR+L++ELD+++
Sbjct:   37 AEATIKTLLNRLLNKGAISAAKEGRRYLYAPLVQRDAWLLEESSSLLERLFDGRVAPLVAHFSQHRKLSRDDVAELRRLLEELDDDQ 123          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A2D6PXM4_9BACT (Transcriptional regulator n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6PXM4_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 8.270e-13
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    4 YTAAQTLLGRLVDKGFVERIK-DGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELD 252
            Y   Q LL RL +KG V R + DG    F   +DRD L+G  L  +A +L +G   PLL +LV + R+S +D Q LR+L+DELD
Sbjct:   43 YGTVQKLLERLREKGHVSRERRDGAPHLFAATLDRDGLIGRSLQTMAEKLCDGSMTPLLTSLVRTERLSAEDRQALRRLVDELD 126          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A7Y4WGB9_9BACT (BlaI/MecI/CopY family transcriptional regulator n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WGB9_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 9.480e-13
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELD 252
            AYT  QTLL RL+ KGFV R K G A  +  ++DR+ L+   + DLA RL  G   PLLL+LV ++R +  +L   R+L++E D
Sbjct:   46 AYTTVQTLLHRLLAKGFVARKKAGVAQIYSAVLDRNELVARHMTDLAERLCAGSMSPLLLSLVKTKRFTRGELARFRELLEEGD 129          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A6G7YWH9_9GAMM (BlaI/MecI/CopY family transcriptional regulator n=1 Tax=Lysobacter sp. HDW10 TaxID=2714936 RepID=A0A6G7YWH9_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 2.500e-12
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   16 QTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELD 252
            +TLL RL++KG +E +KDGR + + P++ R+A +  E + +  RL +G+  PL+ +    +++S  D+  LRKLIDE+D
Sbjct:   41 KTLLNRLLNKGAIEAVKDGRRYLYSPVLKREAWVARESESVLTRLFDGRVAPLVAHFSKHQKLSEVDIAELRKLIDEID 119          
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Match: A0A2S8GW24_9BURK (BlaI/MecI/CopY family transcriptional regulator n=2 Tax=Massilia phosphatilytica TaxID=2026176 RepID=A0A2S8GW24_9BURK)

HSP 1 Score: 66.6 bits (161), Expect = 3.790e-12
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   16 QTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARLSEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELDEEE 261
            +TLL RL+ KG +   K+GR F +  ++ R+  L AE D L  RL  G+  PL+      R++SP D+Q LRKLIDELD+ E
Sbjct:   42 KTLLNRLLKKGAIAAQKEGRRFLYHAVLRREDWLAAESDGLLDRLFGGRIAPLVAYFGSQRKLSPKDIQELRKLIDELDDGE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86164.20079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J7TWT5_9BACT1.820e-1547.67BlaI/MecI/CopY family transcriptional regulator n=... [more]
A0A354GL25_9BACT2.450e-1547.62Transcriptional regulator n=1 Tax=Planctomycetales... [more]
UPI001E582F171.470e-1443.68BlaI/MecI/CopY family transcriptional regulator n=... [more]
A0A142WTP7_9PLAN2.110e-1444.58Penicillinase repressor n=1 Tax=Planctomyces sp. S... [more]
A0A0R0ATG3_9GAMM8.560e-1442.53BlaI/MecI/CopY family transcriptional regulator n=... [more]
A0A0Q4QNH6_9GAMM3.430e-1340.23BlaI/MecI/CopY family transcriptional regulator n=... [more]
A0A2D6PXM4_9BACT8.270e-1345.24Transcriptional regulator n=1 Tax=Planctomycetes b... [more]
A0A7Y4WGB9_9BACT9.480e-1345.24BlaI/MecI/CopY family transcriptional regulator n=... [more]
A0A6G7YWH9_9GAMM2.500e-1239.24BlaI/MecI/CopY family transcriptional regulator n=... [more]
A0A2S8GW24_9BURK3.790e-1245.12BlaI/MecI/CopY family transcriptional regulator n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86164contigM-pyrifera_M_contig86164:582..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.6
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog886293.Sinac_6518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Penicillinase repressor
EggNOG OGs2J12Z@203682,COG3682@1,COG3682@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.1747975-CDS-M-pyrifera_M_contig86164:581..8511622816772.1747975-CDS-M-pyrifera_M_contig86164:581..851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86164 582..851 -
1692278169.439124-CDS-M-pyrifera_M_contig86164:581..8511692278169.439124-CDS-M-pyrifera_M_contig86164:581..851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86164 582..851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86164.20079.1prot_M-pyrifera_M_contig86164.20079.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86164 582..851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86164.20079.1

>prot_M-pyrifera_M_contig86164.20079.1 ID=prot_M-pyrifera_M_contig86164.20079.1|Name=mRNA_M-pyrifera_M_contig86164.20079.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
AYTAAQTLLGRLVDKGFVERIKDGRAFTFRPLVDRDALLGAELDDLAARL
SEGQPMPLLLNLVHSRRVSPDDLQHLRKLIDELDEEESA*
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mRNA from alignment at M-pyrifera_M_contig86164:582..851-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86164.20079.1 ID=mRNA_M-pyrifera_M_contig86164.20079.1|Name=mRNA_M-pyrifera_M_contig86164.20079.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig86164:582..851- (Macrocystis pyrifera P11B4 male)
GCCTACACGGCCGCCCAGACCCTGCTCGGCCGCCTGGTCGACAAGGGCTT CGTCGAGCGCATCAAGGACGGCCGCGCCTTCACCTTTCGTCCGCTCGTCG ACCGCGACGCGCTGCTCGGTGCCGAGCTCGACGACCTCGCCGCGCGCCTC AGCGAAGGCCAGCCGATGCCGCTGCTCCTCAACCTCGTCCACTCGCGCCG CGTCTCGCCGGACGACCTCCAGCACCTGCGCAAGCTCATCGACGAGCTCG ACGAGGAGGAGTCCGCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86164:582..851-

>mRNA_M-pyrifera_M_contig86164.20079.1 ID=mRNA_M-pyrifera_M_contig86164.20079.1|Name=mRNA_M-pyrifera_M_contig86164.20079.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig86164:582..851- (Macrocystis pyrifera P11B4 male)
GCCTACACGGCCGCCCAGACCCTGCTCGGCCGCCTGGTCGACAAGGGCTT
CGTCGAGCGCATCAAGGACGGCCGCGCCTTCACCTTTCGTCCGCTCGTCG
ACCGCGACGCGCTGCTCGGTGCCGAGCTCGACGACCTCGCCGCGCGCCTC
AGCGAAGGCCAGCCGATGCCGCTGCTCCTCAACCTCGTCCACTCGCGCCG
CGTCTCGCCGGACGACCTCCAGCACCTGCGCAAGCTCATCGACGAGCTCG
ACGAGGAGGAGTCCGCATGAGCCTACACGGCCGCCCAGACCCTGCTCGGC
CGCCTGGTCGACAAGGGCTTCGTCGAGCGCATCAAGGACGGCCGCGCCTT
CACCTTTCGTCCGCTCGTCGACCGCGACGCGCTGCTCGGTGCCGAGCTCG
ACGACCTCGCCGCGCGCCTCAGCGAAGGCCAGCCGATGCCGCTGCTCCTC
AACCTCGTCCACTCGCGCCGCGTCTCGCCGGACGACCTCCAGCACCTGCG
CAAGCTCATCGACGAGCTCGACGAGGAGGAGTCCGCATGA
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