prot_M-pyrifera_M_contig86064.20060.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig86064.20060.1
Unique Nameprot_M-pyrifera_M_contig86064.20060.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length121
Homology
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BLAST of mRNA_M-pyrifera_M_contig86064.20060.1 vs. uniprot
Match: A0A2G9H4R2_9LAMI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H4R2_9LAMI)

HSP 1 Score: 50.4 bits (119), Expect = 4.860e-5
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0 
Query:   10 LTFVDQYNAVCGG-GGGVGAVATEAPWLLSRLFHDPTGI-RSIVCSSYAFFFLAPIVSSLAYAFLPVDLIPDASLPFLGFIDDIIVIIVALVIMAGVYRAWVVEQ 112
            L  + +YN + G    G+     + P+LL RL  D     RS+        +LA I S+L Y   PVD+IP+A L  LGF+DD+I+I +  + +A +YRA +V +
Sbjct:   78 LQGIQRYNRLYGERSNGLFQRMQDLPFLLKRLLRDIMDPQRSLPLVLRTRVYLAVIGSAL-YVISPVDIIPEALLGILGFVDDLIIIFICFLHVAALYRAVLVSR 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86064.20060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G9H4R2_9LAMI4.860e-536.19E3 ubiquitin-protein ligase RNF170 n=1 Tax=Handroa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010652Domain of unknown function DUF1232PFAMPF06803DUF1232coord: 63..95
e-value: 9.3E-10
score: 38.1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..83
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 87..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86064contigM-pyrifera_M_contig86064:475..837 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86064.20060.1mRNA_M-pyrifera_M_contig86064.20060.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig86064 475..837 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig86064.20060.1 ID=prot_M-pyrifera_M_contig86064.20060.1|Name=mRNA_M-pyrifera_M_contig86064.20060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
SSPSPAPSTLTFVDQYNAVCGGGGGVGAVATEAPWLLSRLFHDPTGIRSI
VCSSYAFFFLAPIVSSLAYAFLPVDLIPDASLPFLGFIDDIIVIIVALVI
MAGVYRAWVVEQARLRLVGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010652DUF1232