mRNA_M-pyrifera_M_contig859.20024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig859.20024.1
Unique NamemRNA_M-pyrifera_M_contig859.20024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig859.20024.1 vs. uniprot
Match: D7FT60_ECTSI (Nitroreductase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT60_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 4.060e-10
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:    3 VCIGYPSEEQRDFKTLRFDPGEVFHREVFGTTLEGIPSL 119
            V IGYPS+++R+ KTLRF P EV HRE FGT LEG+PSL
Sbjct:  279 VSIGYPSDDRREIKTLRFPPEEVLHREEFGTPLEGVPSL 317
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig859.20024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT60_ECTSI4.060e-1069.23Nitroreductase-like protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig859contigM-pyrifera_M_contig859:26000..26859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size204
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig859.20024.1prot_M-pyrifera_M_contig859.20024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig859 26047..26859 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.078571-UTR-M-pyrifera_M_contig859:25999..260461622816769.078571-UTR-M-pyrifera_M_contig859:25999..26046Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig859 26000..26046 -
1692278167.473931-UTR-M-pyrifera_M_contig859:25999..260461692278167.473931-UTR-M-pyrifera_M_contig859:25999..26046Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig859 26000..26046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.0894039-CDS-M-pyrifera_M_contig859:26046..261981622816769.0894039-CDS-M-pyrifera_M_contig859:26046..26198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig859 26047..26198 -
1692278167.4846942-CDS-M-pyrifera_M_contig859:26046..261981692278167.4846942-CDS-M-pyrifera_M_contig859:26046..26198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig859 26047..26198 -
1622816769.1008923-CDS-M-pyrifera_M_contig859:26807..268591622816769.1008923-CDS-M-pyrifera_M_contig859:26807..26859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig859 26808..26859 -
1692278167.496339-CDS-M-pyrifera_M_contig859:26807..268591692278167.496339-CDS-M-pyrifera_M_contig859:26807..26859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig859 26808..26859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig859.20024.1

>prot_M-pyrifera_M_contig859.20024.1 ID=prot_M-pyrifera_M_contig859.20024.1|Name=mRNA_M-pyrifera_M_contig859.20024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
WFASDTRPRNSEILKRSGLTPVRFSTEKCSVPRWKGSRRYEGYHGGPRPR
TSNVILALSYLCVALDY*
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mRNA from alignment at M-pyrifera_M_contig859:26000..26859-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig859.20024.1 ID=mRNA_M-pyrifera_M_contig859.20024.1|Name=mRNA_M-pyrifera_M_contig859.20024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=860bp|location=Sequence derived from alignment at M-pyrifera_M_contig859:26000..26859- (Macrocystis pyrifera P11B4 male)
TGGTTTGCATCGGATACCCGTCCGAGGAACAGCGAGATTTTAAAACGCTC
AGGTGCGCAAGAGGCCGACTTGTAACGGGCATATGTTAACGAGGTGCCCA
AAGAGCGGCTGTTCCGAAGTACAATCGCCTCCCAACCAGCGGCGTTGCTA
AACGCTCTCGCCACTCCCAGCTCAAAGCTGCAGTCATGGTATGTAGAACC
TTGGTTTGACGACATTTCTCAATACTATGGTAAGCGCAAGCCATTTTCGG
TGCGGCACGAGCTTGGAACGGTATTTTTGCGCGAACCGGAAGTCTTACTT
GTAGCTGTCGTATGTTGGTTTCACCGTGCGCGCAAGCGGCCACGTTTCTC
GTTTAGGAGCGTTTGGTACAGAAATAAGTACCTCCCATGCGCGCATCAAC
ACACACAAACCTACCAGCATGTGTCAACACAGCTGTCGTCTTGCGTTGTT
CACCGTGCGCACAAGCGGCCACGTTTCCCGCTCAGGACCGTTTGGTAGGG
ACCCGCTCAGGCAGCGGAGCGCCCAGTAAGTCGCAGGCGTTGCGTTGCGA
AGTGCCCAGTATGCAGTGTTGCTTTGCGACTTGCGCTCTCTCTTGCTCAT
GCTGACCGTTTTTTTCGCACTTCTTCCTTGCATTGCGATTATCGTGTCGA
TCGAACGGCAGGTTTGACCCCGGTGAGGTTTTCCACCGAGAAGTGTTCGG
TACCACGCTGGAAGGGATCCCGTCGCTATGAGGGTTATCACGGCGGCCCC
CGTCCGCGGACCTCCAATGTCATACTTGCACTGAGCTACCTCTGCGTTGC
CCTGGATTATTAGTCTGTACCACTTTATTCTTAACTTCGTGTTTCTTTAT
TAACGCATGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig859:26000..26859-

>mRNA_M-pyrifera_M_contig859.20024.1 ID=mRNA_M-pyrifera_M_contig859.20024.1|Name=mRNA_M-pyrifera_M_contig859.20024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig859:26000..26859- (Macrocystis pyrifera P11B4 male)
TGGTTTGCATCGGATACCCGTCCGAGGAACAGCGAGATTTTAAAACGCTC
AGTGGTTTGCATCGGATACCCGTCCGAGGAACAGCGAGATTTTAAAACGC
TCAGGTTTGACCCCGGTGAGGTTTTCCACCGAGAAGTGTTCGGTACCACG
CTGGAAGGGATCCCGTCGCTATGAGGGTTATCACGGCGGCCCCCGTCCGC
GGACCTCCAATGTCATACTTGCACTGAGCTACCTCTGCGTTGCCCTGGAT
TATTAGGTTTGACCCCGGTGAGGTTTTCCACCGAGAAGTGTTCGGTACCA
CGCTGGAAGGGATCCCGTCGCTATGAGGGTTATCACGGCGGCCCCCGTCC
GCGGACCTCCAATGTCATACTTGCACTGAGCTACCTCTGCGTTGCCCTGG
ATTATTAG
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