mRNA_M-pyrifera_M_contig85690.19979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85690.19979.1
Unique NamemRNA_M-pyrifera_M_contig85690.19979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A7C2P2F4_9PLAN (DUF4392 domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2P2F4_9PLAN)

HSP 1 Score: 217 bits (552), Expect = 6.530e-66
Identity = 123/280 (43.93%), Postives = 160/280 (57.14%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELF-ACPIGPILSRGWREDLWRSDFGRSITHLISVERVGP--------CLHESPSDA-------------RCRNMRGQPIDEWSADLYRLFEE---SPPHVRTIGIGDGGNEIGMGTF-WADITQNRQPPRHA---CRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGLD 753
            +P    PAAETDGP GA LLA  L   G++ R++TDE C +A+  A    G+   +   CP+ P  + GW ++L       S++H+I VERVGP         L  + S A             RC NMRG+ I+ W+A L+RL E      P V+TIGIGDGGNE+G+G   W ++      P      CR  TDWTILAGVS+WGAMALA  +   R     L  W  D  +  L Q+V RGP++DG T+L EPTVDGLPF TY+QPWE +R+ LGL+
Sbjct:   64 IPAGQPPAAETDGPPGAALLAATLRACGMDVRLVTDEPCRTAVTVAAELYGLPSAVVECCPVLPAEADGWLQNL---AIDPSLSHVICVERVGPSHTPASWGALRVAVSAAGRFANAVPDEHWDRCHNMRGEIIEGWTAPLHRLVERIAGERPGVKTIGIGDGGNELGLGAVPWRELRDRLSGPAAPLVPCRIATDWTILAGVSNWGAMALAAGIAHGRGCTEALRPWNRDAEEQRLRQLVARGPAVDGVTRLREPTVDGLPFLTYIQPWEGMRQRLGLE 340          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A257WQB1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257WQB1_9BACT)

HSP 1 Score: 215 bits (547), Expect = 4.370e-65
Identity = 126/276 (45.65%), Postives = 164/276 (59.42%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLE-LFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPCLH-ESPSDA----------------RCRNMRGQPIDEWSADLYRLFE---ESPPHVRTIGIGDGGNEIGMGTF-WADITQNRQPPRHA---CRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGLD 753
            VP    PAAETDGP+GA  LA  L   G++  ++TD  C  A++TA  A  +  + + ACP      R W E L+    G  +TH+ISVERVGP    ++ SDA                RC NMRG+ IDE+S  LY   E   +  P VRT+GIGDGGNEIGMGT  ++++ +    P+ +   CR  TDWTILAGVS+WGAMALA AV  +R  +  L +      +  L+ +V +GP++DG T+L EPTVDGLPF TY+QPWE IR  L LD
Sbjct:   71 VPRGTPPAAETDGPIGAAFLAASLLDCGMKPLLLTDRWCWKAVQTAAAAYRLPPDAVVACPDSESEVRNWSERLFNEQGGPPLTHVISVERVGPAHRPDTWSDAALAGSFRNRVPEGNWNRCHNMRGEIIDEFSPPLYAAIEWVSKHHPGVRTVGIGDGGNEIGMGTIPYSELRKRLVEPQASQIPCRIATDWTILAGVSNWGAMALAAAVCWQRGCLDSLRAADRRTEELRLKSLVEQGPAVDGVTRLQEPTVDGLPFVTYLQPWETIRTRLQLD 346          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A517ZDK6_9PLAN (Uncharacterized protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZDK6_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 2.630e-64
Identity = 118/276 (42.75%), Postives = 162/276 (58.70%), Query Frame = 1
Query:   19 PAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVD-LELFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPC----------------LHES----PSDARCRN--MRGQPIDEWSADLYRLFEESPPH--VRTIGIGDGGNEIGMGTF-WADITQNRQP----PRHACRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGLDT 756
            P AETDGP GA LLAD+L+Q G    +ITD+ C+ A+    T CG+D + + +CP+ P  +  + + LW   +   ++HLI++ER+GP                 L E     P + R R+  MRG+ +D  +A L+RLFEE+     +RT+GI DGGNE+GMGT  W D+T +R P    PR  CRTRTDWTI+ G S+WG  ALA A  ++   V  L  WT  R+   LE +V  GP++DGCT+  E TVDGLPF T++Q W  I    G +T
Sbjct:   62 PVAETDGPPGAVLLADILTQLGARVWLITDDPCSGALEAGRTFCGLDDVPVVSCPVAPEAAEPFLQRLWTDQWQDGLSHLIAIERIGPSHTPTSLTAQPRSGPPPLEEFERLVPPENRDRHHTMRGEIMDASTAPLHRLFEEADRRSDMRTVGICDGGNELGMGTLLWEDVT-SRLPEPIGPRIVCRTRTDWTIIGGTSNWGGFALAAATAMQAGRVDLLRDWTVARMSDLLEDLVAHGPAVDGCTRRHEATVDGLPFETFIQLWIEILHRAGGET 336          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: UPI001983392E (DUF4392 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001983392E)

HSP 1 Score: 210 bits (535), Expect = 6.500e-63
Identity = 123/286 (43.01%), Postives = 157/286 (54.90%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPC-------------------------------LHESPSDA--RCRNMRGQPIDEWSADLYRLFEESP---PHVRTIGIGDGGNEIGMGTF-WADITQN---RQPPRHACRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRR 738
            +P A  PAAETDGP G+ LLA  L   GIE+ +ITD  CA A+R A  A G+   +    + P+ +  W ++ W S+F   +THL+++ERVGP                                L +  S+   RC NMRG  ID  +A L+ LFE  P   P  RTIGIGDGGNEIGMG   WA++ +     Q  R  CR   D+ I+AG S+WGAMALA  V L R  +  L  WT +R +  LE +V  GP++DG T L E TVDGLPF TY+QPWE I R
Sbjct:   88 IPHAQPPAAETDGPPGSLLLAHCLQALGIEAAVITDAPCAPAVRAA--ADGIGFPVNRVLVSPLHAESWCDEFWNSEFAGGLTHLVAIERVGPSHTPASIGRQGTGDESQGISNLKSEISTLDSFLADVASEHHDRCHNMRGVCIDGHTAPLHLLFERLPSRHPAARTIGIGDGGNEIGMGAIPWAELRRRLSGEQAGRVPCRIACDFNIVAGTSNWGAMALAAGVCLLRDRLDVLQPWTRERHREWLEHLVANGPAVDGVTGLREATVDGLPFLTYIQPWEGILR 371          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: UPI00199AE596 (DUF4392 domain-containing protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI00199AE596)

HSP 1 Score: 208 bits (530), Expect = 1.560e-62
Identity = 128/289 (44.29%), Postives = 161/289 (55.71%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELFACPIGPILSRGWREDLWRSDF--GRS----ITHLISVERVGPCLHESPSDAR---------------------------CRNMRGQPIDEWSADLYRLFE--ESPPHVRTIGIGDGGNEIGMGTF-WADITQNRQPP---RHACRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGL 750
            +P A  P+AETDGP GA LLA  L+  G+  +I+TDE C SA+  A    G+      C I    SRG  ++ W  D   G S    +THLIS+ERVGP  H S S                              C NMRG+ ID  +A L+RLFE   +   +RTIGIGDGGNEIGMG+  W ++ +    P   R  CR  TDWTI+AGVS+WG  ALA A  L  + V     WT  +   ALE++V  GP++DG T+L EPTVDGLPF TY+QPWE +RR +GL
Sbjct:   60 IPGATPPSAETDGPPGAALLAAALTHAGLSVQIVTDEPCRSAVEVAARELGLAQAEIVCTIPT--SRG-EQEAWCIDMLNGTSRQQPLTHLISLERVGPS-HTSESIREQSRTEGIDEADRLAEFEQLVPEADRNHCHNMRGECIDAHTAPLHRLFELTANRADIRTIGIGDGGNEIGMGSLPWHELHRRLSGPGAARVPCRIATDWTIVAGVSNWGGQALAAATLLLVNKVDAARDWTTHQQHRALERLVAEGPAVDGITRLREPTVDGLPFLTYIQPWEGLRRLMGL 344          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A7C2JYK9_9PLAN (DUF4392 domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JYK9_9PLAN)

HSP 1 Score: 206 bits (525), Expect = 7.040e-62
Identity = 122/279 (43.73%), Postives = 156/279 (55.91%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPC----------------------LHESPSDARCRNMRGQPIDEWSADLYRLFE---ESPPHVRTIGIGDGGNEIGMGTF-WADITQNRQPPRHA---CRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGL 750
            +P A  PAAETDGP GA LLA  LS+ G++ R++TD  CA A+ +A    G+  +      G   +  +  D  R      ++HLI+VERVGP                           P + RC NMRG+ ID  +A L+R+FE   +  P VRTIGIGDGGNEIGMG+  W ++ Q    P      CR  TDWTI+AGVS+WGA ALA AV   R +   L  +     +H    MV  GP++DG T+L EPTVDGLPF TY+QPWE +RR LGL
Sbjct:   66 IPGAEPPAAETDGPPGAALLAIALSKCGMDVRLMTDVQCAPAVASAAREYGLPSDCVVSATGDETAVFFPPDAAR------LSHLIAVERVGPAHSLRSYAGRRPETDPDVQAFRRTMPFPHEDRCHNMRGEIIDAHTAPLHRVFETVSQLDPGVRTIGIGDGGNEIGMGSVPWDELRQRLNGPSAPLVPCRVPTDWTIVAGVSNWGAQALAVAVCHLRGETHHLAEFDLASEEHRWRAMVESGPAVDGVTRLREPTVDGLPFLTYIQPWEGMRRVLGL 338          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A7C4LKV7_9PLAN (DUF4392 domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LKV7_9PLAN)

HSP 1 Score: 205 bits (522), Expect = 3.450e-61
Identity = 121/279 (43.37%), Postives = 151/279 (54.12%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELFA-CPIGPILSRGWREDLWRSDFGRSITHLISVERVGPC-----------LHESPSDARCR-----------NMRGQPIDEWSADLYRLF---EESPPHVRTIGIGDGGNEIGMGTFWADITQNR----QPPRHACRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELG 747
            +P    PAAETDGP GA LLA VLS  G+   ++TD  CASA+  A     +  +    CP+ P  +  W +   R      +THLI+VERVGP            LH+    A CR           NMRG+ ID+ +  L+ LF       PHVRTIGIGDGGNEIGMG+   D  ++R      P   CR   DWTILAGVS+WGA ALA  V   R        +  D  Q  +  +V RGP++DG T+L +PTVDGLPF TY+QPWE +RR L 
Sbjct:   75 IPAGQPPAAETDGPPGAALLAKVLSDCGLRVALLTDRPCASAVAVAAEQYALPRDCVGVCPLRPPDANEWLDRRVRMAAAEGLTHLIAVERVGPSHSLSTFAGSRSLHDPAVQAFCREVPAEHWDHCHNMRGEIIDDHTGPLHGLFLRIAAELPHVRTIGIGDGGNEIGMGSIPWDELRSRLAGPAAPLIPCRIPADWTILAGVSNWGAQALAAGVCRLRGTADCCTPYDTDAEQRRMLAVVQRGPAVDGVTRLQQPTVDGLPFLTYIQPWEAMRRWLA 353          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A5C9CBJ2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9CBJ2_9BACT)

HSP 1 Score: 205 bits (521), Expect = 6.730e-61
Identity = 122/280 (43.57%), Postives = 154/280 (55.00%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLE-LFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPC------------------------LHESPSDAR--CRNMRGQPIDEWSADLYRLFEESP---PHVRTIGIGDGGNEIGMGTF-WADITQN---RQPPRHACRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRR 738
            +P A  P AETDGP G+  LA  L   GI++ +ITDE CA A+R A    G   + LF   + P+ +  W +D  +S+F R +THL+SVERVGP                         L E  S+    C NMRG  ID  +A L+ LFE  P   P  RTIG+GDGGNEIGMG   W ++ +     Q  R  CR   D+ I+AG S+WGAMALA  V L R  +  L  WT +R +  LE +V  GP++DG T   E TVDGLPF TY+QPWE I R
Sbjct:   88 IPHAQPPCAETDGPPGSLFLAHCLRSLGIDAAVITDEPCAPAVRAAADGIGFPTDRLF---VAPLKAEMWCDDFLQSEFARGLTHLVSVERVGPSHTPESVGSGEWGVGSGADSPLSSFLAEVASEHHNHCHNMRGVCIDAHTAPLHLLFERLPQFHPTARTIGVGDGGNEIGMGAIPWFELRRRLSGEQAGRVPCRIACDFNIVAGTSNWGAMALAAGVCLLRDRLDVLQPWTQERHREWLEYLVANGPAVDGVTGRREATVDGLPFLTYIQPWEGILR 364          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A517ZMJ2_9PLAN (Uncharacterized protein n=3 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZMJ2_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 1.110e-58
Identity = 116/280 (41.43%), Postives = 154/280 (55.00%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPC-------------------LHE---SPSDARCRNMRGQPIDEWSADLYRLFE---ESPPHVRTIGIGDGGNEIGMGTFWADITQNRQPPRHA----CRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGLD 753
            +P    PAAETDGPLG   LA VL + G+ES +ITD  C  A++ A  A     +     +  I   G  E  ++S  G+ +THLI++ERVGPC                    H+     +  RC NMRG+ +D +S +L+RLFE   +S P ++TIGIGDG NEIGMG+   +    R    HA    CR  TDWTI+ G S+WG  ALA A+   +     L  + A +    LE  V  GP++DG T+  EPTVDGLPF TY+QP E IR+ LG+D
Sbjct:   65 IPGGQPPAAETDGPLGTLFLAAVLEKLGVESHVITDNHCHPALQAAAEAMEFPNDRVHQTVVNINETG--ETFFQSAPGKQLTHLIALERVGPCHTTTSLTGQRRSGTVPLEEFHQLVLPTAHDRCHNMRGEAMDAYSGNLHRLFEFATQSRPSIKTIGIGDGANEIGMGSIPWENLHRRLEGDHAGRVPCRIATDWTIVTGTSNWGGYALAAAIAHLKDAPQHLAPYDAAQQFGVLEHFVQHGPAVDGVTRRQEPTVDGLPFLTYIQPLEGIRQLLGID 342          
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Match: A0A518I7E9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I7E9_9PLAN)

HSP 1 Score: 197 bits (500), Expect = 3.650e-58
Identity = 119/280 (42.50%), Postives = 155/280 (55.36%), Query Frame = 1
Query:    1 VPDAPMPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLELFACPIGPILSRGWREDLW-RSDFGR-SITHLISVERVGPC--------LHESPSDAR--------------CRNMRGQPIDEWSADLYRLFEESP---PHVRTIGIGDGGNEIGMGTFWADITQNRQPPRHA----CRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQHALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELG 747
            VP A +PAAETDGP GA LLA VL   GI + ++TDE CA  +  A+ A       ++ P   +      E+ W    FGR +++HLISVERVGP           ++P   +              C NMRG+ ID ++A L++LFE  P   P  +TIG+GDGGNEIGMG    +    R    H+    CR  TDW I+AG S+WGA ALA AV L++ +   L  W  D  Q  LE MV +  ++DG T+  EPTVDGLPF TY+QPWE I + L 
Sbjct:   62 VPSADIPAAETDGPPGAVLLALVLEACGINTSVVTDELCAPVVSAAVDA-------YSYPKSQLNVLQTDEENWVELFFGRQNVSHLISVERVGPSHTPDTWAGQQKAPGTEQGDFHTKVPQDHFDCCHNMRGEIIDAFTAPLHQLFERLPDFFPEAQTIGVGDGGNEIGMGAISWEELDRRIASDHSGLIPCRIATDWNIVAGTSNWGASALAAAVALQKKETGILFEWQRDEQQTVLEAMVSQANAVDGVTKQREPTVDGLPFLTYMQPWEGILQILA 334          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85690.19979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2P2F4_9PLAN6.530e-6643.93DUF4392 domain-containing protein n=1 Tax=Schlesne... [more]
A0A257WQB1_9BACT4.370e-6545.65Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A517ZDK6_9PLAN2.630e-6442.75Uncharacterized protein n=1 Tax=Maioricimonas rari... [more]
UPI001983392E6.500e-6343.01DUF4392 domain-containing protein n=1 Tax=Planctom... [more]
UPI00199AE5961.560e-6244.29DUF4392 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C2JYK9_9PLAN7.040e-6243.73DUF4392 domain-containing protein n=1 Tax=Schlesne... [more]
A0A7C4LKV7_9PLAN3.450e-6143.37DUF4392 domain-containing protein n=1 Tax=Schlesne... [more]
A0A5C9CBJ2_9BACT6.730e-6143.57Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517ZMJ2_9PLAN1.110e-5841.43Uncharacterized protein n=3 Tax=Symmachiella dynat... [more]
A0A518I7E9_9PLAN3.650e-5842.50Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85690contigM-pyrifera_M_contig85690:102..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score182.2
Seed ortholog evalue3e-43
Seed eggNOG ortholog344747.PM8797T_04745
KEGG rclassRC00553
KEGG koko:K22210
KEGG ReactionR01583
KEGG Pathwayko00471,map00471
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4392)
EggNOG OGs2DB6N@1,2J0I8@203682,2Z7HZ@2
EC4.2.1.48
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size759
Cds size744
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.0559537-CDS-M-pyrifera_M_contig85690:101..8451622816767.0559537-CDS-M-pyrifera_M_contig85690:101..845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85690 102..845 -
1692278166.2614694-CDS-M-pyrifera_M_contig85690:101..8451692278166.2614694-CDS-M-pyrifera_M_contig85690:101..845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85690 102..845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.0691574-UTR-M-pyrifera_M_contig85690:845..8601622816767.0691574-UTR-M-pyrifera_M_contig85690:845..860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85690 846..860 -
1692278166.2741365-UTR-M-pyrifera_M_contig85690:845..8601692278166.2741365-UTR-M-pyrifera_M_contig85690:845..860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85690 846..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85690.19979.1prot_M-pyrifera_M_contig85690.19979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85690 102..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85690.19979.1

>prot_M-pyrifera_M_contig85690.19979.1 ID=prot_M-pyrifera_M_contig85690.19979.1|Name=mRNA_M-pyrifera_M_contig85690.19979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp
MPAAETDGPLGATLLADVLSQNGIESRIITDESCASAIRTAMTACGVDLE
LFACPIGPILSRGWREDLWRSDFGRSITHLISVERVGPCLHESPSDARCR
NMRGQPIDEWSADLYRLFEESPPHVRTIGIGDGGNEIGMGTFWADITQNR
QPPRHACRTRTDWTILAGVSDWGAMALATAVTLKRSDVSPLVSWTADRIQ
HALEQMVHRGPSIDGCTQLAEPTVDGLPFATYVQPWELIRRELGLDT*
back to top

mRNA from alignment at M-pyrifera_M_contig85690:102..860-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85690.19979.1 ID=mRNA_M-pyrifera_M_contig85690.19979.1|Name=mRNA_M-pyrifera_M_contig85690.19979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=759bp|location=Sequence derived from alignment at M-pyrifera_M_contig85690:102..860- (Macrocystis pyrifera P11B4 male)
GTGCCGGACGCCCCCATGCCCGCCGCTGAAACAGACGGCCCTCTCGGGGC GACGCTACTGGCAGATGTCCTGAGCCAGAACGGAATTGAATCTCGCATCA TCACTGATGAGTCGTGCGCGTCCGCCATCCGGACTGCAATGACTGCGTGC GGGGTCGACCTGGAGTTATTTGCATGTCCCATTGGACCCATTTTGTCACG GGGCTGGAGAGAAGATCTCTGGCGAAGTGATTTCGGGAGATCAATCACAC ACCTGATCTCGGTGGAACGAGTCGGCCCATGTCTGCATGAATCACCGAGC GATGCCCGTTGCCGCAACATGCGTGGGCAGCCGATTGATGAGTGGTCAGC CGATCTGTATCGGCTCTTCGAGGAAAGCCCGCCCCATGTCCGCACGATTG GCATTGGTGATGGCGGAAACGAAATCGGCATGGGAACCTTCTGGGCAGAC ATCACTCAGAACAGGCAGCCCCCACGCCACGCCTGTCGAACGCGTACCGA CTGGACAATTCTCGCTGGTGTGAGCGATTGGGGTGCCATGGCTCTCGCCA CCGCTGTCACCTTGAAGCGGTCGGATGTCAGTCCACTCGTGTCATGGACA GCCGACCGAATCCAGCACGCATTGGAACAGATGGTCCACCGCGGCCCGTC CATCGACGGCTGCACTCAACTGGCCGAGCCCACCGTCGATGGCCTGCCCT TCGCAACATACGTCCAACCTTGGGAACTCATCCGACGAGAACTCGGTTTG GACACATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85690:102..860-

>mRNA_M-pyrifera_M_contig85690.19979.1 ID=mRNA_M-pyrifera_M_contig85690.19979.1|Name=mRNA_M-pyrifera_M_contig85690.19979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig85690:102..860- (Macrocystis pyrifera P11B4 male)
ATGCCCGCCGCTGAAACAGACGGCCCTCTCGGGGCGACGCTACTGGCAGA
TGTCCTGAGCCAGAACGGAATTGAATCTCGCATCATCACTGATGAGTCGT
GCGCGTCCGCCATCCGGACTGCAATGACTGCGTGCGGGGTCGACCTGGAG
TTATTTGCATGTCCCATTGGACCCATTTTGTCACGGGGCTGGAGAGAAGA
TCTCTGGCGAAGTGATTTCGGGAGATCAATCACACACCTGATCTCGGTGG
AACGAGTCGGCCCATGTCTGCATGAATCACCGAGCGATGCCCGTTGCCGC
AACATGCGTGGGCAGCCGATTGATGAGTGGTCAGCCGATCTGTATCGGCT
CTTCGAGGAAAGCCCGCCCCATGTCCGCACGATTGGCATTGGTGATGGCG
GAAACGAAATCGGCATGGGAACCTTCTGGGCAGACATCACTCAGAACAGG
CAGCCCCCACGCCACGCCTGTCGAACGCGTACCGACTGGACAATTCTCGC
TGGTGTGAGCGATTGGGGTGCCATGGCTCTCGCCACCGCTGTCACCTTGA
AGCGGTCGGATGTCAGTCCACTCGTGTCATGGACAGCCGACCGAATCCAG
CACGCATTGGAACAGATGGTCCACCGCGGCCCGTCCATCGACGGCTGCAC
TCAACTGGCCGAGCCCACCGTCGATGGCCTGCCCTTCGCAACATACGTCC
AACCTTGGGAACTCATCCGACGAGAACTCGGTTTGGACACATGAATGCCC
GCCGCTGAAACAGACGGCCCTCTCGGGGCGACGCTACTGGCAGATGTCCT
GAGCCAGAACGGAATTGAATCTCGCATCATCACTGATGAGTCGTGCGCGT
CCGCCATCCGGACTGCAATGACTGCGTGCGGGGTCGACCTGGAGTTATTT
GCATGTCCCATTGGACCCATTTTGTCACGGGGCTGGAGAGAAGATCTCTG
GCGAAGTGATTTCGGGAGATCAATCACACACCTGATCTCGGTGGAACGAG
TCGGCCCATGTCTGCATGAATCACCGAGCGATGCCCGTTGCCGCAACATG
CGTGGGCAGCCGATTGATGAGTGGTCAGCCGATCTGTATCGGCTCTTCGA
GGAAAGCCCGCCCCATGTCCGCACGATTGGCATTGGTGATGGCGGAAACG
AAATCGGCATGGGAACCTTCTGGGCAGACATCACTCAGAACAGGCAGCCC
CCACGCCACGCCTGTCGAACGCGTACCGACTGGACAATTCTCGCTGGTGT
GAGCGATTGGGGTGCCATGGCTCTCGCCACCGCTGTCACCTTGAAGCGGT
CGGATGTCAGTCCACTCGTGTCATGGACAGCCGACCGAATCCAGCACGCA
TTGGAACAGATGGTCCACCGCGGCCCGTCCATCGACGGCTGCACTCAACT
GGCCGAGCCCACCGTCGATGGCCTGCCCTTCGCAACATACGTCCAACCTT
GGGAACTCATCCGACGAGAACTCGGTTTGGACACATGA
back to top