mRNA_M-pyrifera_M_contig85677.19974.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85677.19974.1
Unique NamemRNA_M-pyrifera_M_contig85677.19974.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: R4Z229_9ACTN (Uncharacterized protein n=2 Tax=Candidatus Microthrix parvicella TaxID=41950 RepID=R4Z229_9ACTN)

HSP 1 Score: 206 bits (524), Expect = 7.670e-60
Identity = 95/139 (68.35%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            AMRD +   VR G+  F +VGC  CH     TGPA V  L++QTI PFTDLLLHDMG GLADGRPDF ASG+EWRTPPLWGLGL+  VNGERF++HDGRART EEAI+WHGGEAQ + D F AL+AD+RA L+A+LEAL
Sbjct:  327 AMRDFESPHVRSGAEQFGTVGCAGCHTTSQTTGPADVPMLSEQTISPFTDLLLHDMGPGLADGRPDFAASGTEWRTPPLWGLGLVPVVNGERFMMHDGRARTFEEAIMWHGGEAQAAADAFAALDADERADLIAYLEAL 465          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: UPI00058DCC70 (thiol oxidoreductase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00058DCC70)

HSP 1 Score: 203 bits (517), Expect = 7.440e-59
Identity = 95/142 (66.90%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAA---VDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            AMRD D  +VR+G  +F+  GC +CH    +TGP A   V+ L+DQT  P+TDLLLHDMG+GLADGRPDF+ASGSEWRTPPLWG+GLI +VNGERFLLHDGRART+EEAILWHGGEA+ + +RF   + D R AL+AFLEAL
Sbjct:  319 AMRDADTDEVRDGVALFDDFGCATCHTPTQETGPIADVGVEALSDQTFSPYTDLLLHDMGEGLADGRPDFDASGSEWRTPPLWGIGLILDVNGERFLLHDGRARTIEEAILWHGGEAEDAAERFRTADLDDRTALIAFLEAL 460          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: A0A1H4KNM1_9FLAO (CxxC motif-containing protein, DUF1111 family n=8 Tax=Maribacter TaxID=252356 RepID=A0A1H4KNM1_9FLAO)

HSP 1 Score: 187 bits (476), Expect = 9.220e-53
Identity = 84/137 (61.31%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    7 RDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            RD DD  V EG  +F S+ C  CH+ +++TG   +D LA+QTI+P+TD+LLHDMGDGLADG PDFEA+G+EWRTPPLWG+GLIE VNG   LLHDGRAR +EEAILWHGGEA  S ++F  L A++R  ++ FL  L
Sbjct:  328 RDVDDQNVLEGKELFVSIDCAKCHIPKLETGAYEIDALANQTIRPYTDMLLHDMGDGLADGLPDFEANGNEWRTPPLWGIGLIETVNGHTNLLHDGRARNIEEAILWHGGEALASKEKFKELSAEERDKIIQFLNTL 464          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: A0A5R9ATV0_9FLAO (C-type cytochrome n=2 Tax=Maribacter TaxID=252356 RepID=A0A5R9ATV0_9FLAO)

HSP 1 Score: 186 bits (471), Expect = 5.240e-52
Identity = 84/139 (60.43%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A RD DD  V EG  +FNS+ C +CH+ +I+TG   + +LA+QTI+P+TDLLLHDMG+GLAD  PDF+A+G+EWRTPPLWG+GLIE VN    LLHDGRAR +EEAILWHGGEA  +  +F AL  D+R+ L+ FL  L
Sbjct:  328 ARRDVDDENVLEGKEIFNSINCIACHIPKIETGSYDITSLANQTIRPYTDLLLHDMGEGLADNLPDFDAAGNEWRTPPLWGIGLIETVNSHTNLLHDGRARNIEEAILWHGGEALNAQTKFKALPQDERSKLIQFLNTL 466          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: UPI001D05ACB9 (c-type cytochrome n=2 Tax=Zobellia nedashkovskayae TaxID=2779510 RepID=UPI001D05ACB9)

HSP 1 Score: 185 bits (469), Expect = 1.270e-51
Identity = 81/139 (58.27%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A RD D+ +V +G  +FNS+ C  CH+   +TG  A+D LA+QTI+P+TDLLLHDMGD L+DG P+F A+G+EWRTPPLWG+GLIE VN    LLHDGRAR +EEAILWHGGEA+   + F+AL  ++R  ++AF+E L
Sbjct:  338 ARRDFDNEEVLQGKELFNSINCSGCHIATFETGAYAIDALANQTIRPYTDLLLHDMGDALSDGAPEFRATGNEWRTPPLWGVGLIETVNDHTNLLHDGRARNIEEAILWHGGEAEAIKNSFMALNKEERTKIIAFIETL 476          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: UPI00188B9548 (c-type cytochrome n=1 Tax=Zobellia roscoffensis TaxID=2779508 RepID=UPI00188B9548)

HSP 1 Score: 182 bits (462), Expect = 8.380e-51
Identity = 81/139 (58.27%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A RD DD  V +G  +FN++ C  CH+   +TG   +D LA+QTI+P+TDLLLHDMG+GLAD  P++ ASG EWRTPPLWG+GLIE VN    LLHDGRART+EEAILWHGGEA+   +RF+AL+ ++R  ++ F+E L
Sbjct:  315 ARRDVDDEDVLKGKELFNTIHCSGCHIAVHETGAYEIDALANQTIRPYTDLLLHDMGEGLADNAPEYRASGVEWRTPPLWGVGLIETVNDHTNLLHDGRARTIEEAILWHGGEAEEIKNRFMALDKEERGQIIRFIETL 453          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: A0A0F6W5J2_9DELT (Putative thiol oxidoreductase with 2 cytochrome c heme-binding site n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6W5J2_9DELT)

HSP 1 Score: 182 bits (462), Expect = 9.120e-51
Identity = 83/139 (59.71%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A RD DD  V  G  +F   GC SCHV  ++TG   +  LADQ I P+TD+LLHD+G+GLAD RPDFEA G EWRTPPLWG+GL++ VN  + L+HDGRAR L EAILWHGGEA+ S + F A+  D+R ALL FLE+L
Sbjct:  319 ARRDADDPDVLHGKRLFRDAGCASCHVPRLETGEHEITALADQIIYPYTDMLLHDVGEGLADHRPDFEADGREWRTPPLWGIGLLQTVNRHQLLMHDGRARGLAEAILWHGGEAEASREAFRAMSRDEREALLRFLESL 457          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: A0A5J4ITV1_9FLAO (Thiol oxidoreductase n=1 Tax=Patiriisocius marinus TaxID=1397112 RepID=A0A5J4ITV1_9FLAO)

HSP 1 Score: 182 bits (462), Expect = 1.170e-50
Identity = 87/139 (62.59%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A R+ +D  V EG  +FN++ C SCH  +I TG  A+  LA+QTI+P+TDLLLHDMG GLAD   DF+A+G+EWRTPPLWG+GLIE VNG   LLHDGRART+EEAILWHGGEA+TS   F AL   +RA +L FLE+L
Sbjct:  331 ARRNVNDQDVLEGKTLFNNMQCISCHKPKIVTGSHAISALANQTIRPYTDLLLHDMGQGLADNVTDFKATGTEWRTPPLWGIGLIETVNGHSNLLHDGRARTIEEAILWHGGEAETSKQEFTALTNVERAQVLKFLESL 469          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: A0A6I6LMZ6_PSEST (C-type cytochrome n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=A0A6I6LMZ6_PSEST)

HSP 1 Score: 182 bits (462), Expect = 1.220e-50
Identity = 86/139 (61.87%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTGPAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A R  DD QV  G  +F+  GCQ+CHV    TG AA   LA+Q I P+TDLLLHDMGDGLAD RP+FEASGSEWRTPPLWG+GL E V+G    LHDGRAR L EAILWHGGEA+ +    +  ++D+R+ALLAFL++L
Sbjct:  333 ARRKVDDPQVLAGKTLFHRAGCQNCHVPTFTTGDAAEPELANQVIHPYTDLLLHDMGDGLADHRPEFEASGSEWRTPPLWGIGLTETVSGHTQFLHDGRARNLLEAILWHGGEAERAKQAVLGFDSDERSALLAFLDSL 471          
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Match: A0A424I7M7_9BACT (Thiol oxidoreductase n=2 Tax=Verrucomicrobia TaxID=74201 RepID=A0A424I7M7_9BACT)

HSP 1 Score: 181 bits (460), Expect = 1.870e-50
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    1 AMRDTDDAQVREGSNVFNSVGCQSCHVREIQTG-PAAVDTLADQTIQPFTDLLLHDMGDGLADGRPDFEASGSEWRTPPLWGLGLIEEVNGERFLLHDGRARTLEEAILWHGGEAQTSTDRFVALEADKRAALLAFLEAL 417
            A RD DD  VR+G  +F  + C SCH  E++TG    +  L +QTI+P+TDLLLHDMG GLADGR DFEASG EWRTPPLWG+GL E VNG   LLHDGRAR L EAILWHGGEA++S +RF+    ++R+ALL+FLE+L
Sbjct:  320 ARRDVDDPVVRQGQQIFAKMNCASCHTPELRTGNDYPLVELRNQTIRPYTDLLLHDMGKGLADGREDFEASGQEWRTPPLWGIGLQERVNGHTTLLHDGRARNLTEAILWHGGEAESSRERFLNSTREERSALLSFLESL 459          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85677.19974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R4Z229_9ACTN7.670e-6068.35Uncharacterized protein n=2 Tax=Candidatus Microth... [more]
UPI00058DCC707.440e-5966.90thiol oxidoreductase n=1 Tax=Ilumatobacter nonamie... [more]
A0A1H4KNM1_9FLAO9.220e-5361.31CxxC motif-containing protein, DUF1111 family n=8 ... [more]
A0A5R9ATV0_9FLAO5.240e-5260.43C-type cytochrome n=2 Tax=Maribacter TaxID=252356 ... [more]
UPI001D05ACB91.270e-5158.27c-type cytochrome n=2 Tax=Zobellia nedashkovskayae... [more]
UPI00188B95488.380e-5158.27c-type cytochrome n=1 Tax=Zobellia roscoffensis Ta... [more]
A0A0F6W5J2_9DELT9.120e-5159.71Putative thiol oxidoreductase with 2 cytochrome c ... [more]
A0A5J4ITV1_9FLAO1.170e-5062.59Thiol oxidoreductase n=1 Tax=Patiriisocius marinus... [more]
A0A6I6LMZ6_PSEST1.220e-5061.87C-type cytochrome n=1 Tax=Pseudomonas stutzeri Tax... [more]
A0A424I7M7_9BACT1.870e-5062.14Thiol oxidoreductase n=2 Tax=Verrucomicrobia TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85677contigM-pyrifera_M_contig85677:3..859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.9
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog1192034.CAP_4262
Preferred nameirpA
KEGG koko:K07231,ko:K07338
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Imelysin
EggNOG OGs1PD5R@1224,2WXS1@28221,2Z34I@29,432FZ@68525,COG3489@1,COG3489@2
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size857
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.75459-UTR-M-pyrifera_M_contig85677:2..4211622816766.75459-UTR-M-pyrifera_M_contig85677:2..421Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85677 3..421 +
1692278166.0424862-UTR-M-pyrifera_M_contig85677:2..4211692278166.0424862-UTR-M-pyrifera_M_contig85677:2..421Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85677 3..421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.7657843-CDS-M-pyrifera_M_contig85677:421..8591622816766.7657843-CDS-M-pyrifera_M_contig85677:421..859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85677 422..859 +
1692278166.0573072-CDS-M-pyrifera_M_contig85677:421..8591692278166.0573072-CDS-M-pyrifera_M_contig85677:421..859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85677 422..859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85677.19974.1prot_M-pyrifera_M_contig85677.19974.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85677 422..859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85677.19974.1

>prot_M-pyrifera_M_contig85677.19974.1 ID=prot_M-pyrifera_M_contig85677.19974.1|Name=mRNA_M-pyrifera_M_contig85677.19974.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MRSTTPRRFVRVVLAGSLALAACGSDTPDRGDVLLDLADASIIPAYDTLD
DQAAGLLDATQTLCDAPSDATVDAARDAMTATRDAWLSSEALWVGPVMER
RSWAVVDWPIAADEIEALIADESIVLDNDRLSRRIGADQRGLQAVE
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mRNA from alignment at M-pyrifera_M_contig85677:3..859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85677.19974.1 ID=mRNA_M-pyrifera_M_contig85677.19974.1|Name=mRNA_M-pyrifera_M_contig85677.19974.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=857bp|location=Sequence derived from alignment at M-pyrifera_M_contig85677:3..859+ (Macrocystis pyrifera P11B4 male)
GCGATGCGAGACACCGACGATGCGCAGGTGCGGGAAGGTTCCAACGTGTT CAACTCCGTGGGCTGTCAGTCCTGTCATGTCCGTGAGATCCAGACCGGCC CGGCAGCGGTCGACACCCTCGCCGATCAGACCATCCAGCCGTTCACCGAT CTGCTGCTCCACGACATGGGCGACGGCCTGGCCGACGGTCGCCCCGACTT CGAGGCGTCCGGCAGCGAGTGGCGGACCCCGCCGTTGTGGGGACTCGGTC TGATCGAGGAGGTCAACGGCGAACGCTTCCTGCTCCACGACGGCCGTGCC CGCACGCTCGAAGAGGCGATCCTGTGGCACGGTGGCGAAGCCCAGACATC GACGGATCGATTCGTGGCGCTCGAGGCCGACAAGCGAGCTGCCCTGCTCG CATTCCTGGAAGCGCTCTGATGCGCTCTACGACGCCGCGCCGGTTCGTGA GAGTGGTCCTCGCCGGCTCCTTGGCGCTCGCCGCCTGTGGGAGCGACACC CCCGATCGGGGCGATGTGCTGCTCGACCTGGCCGATGCGTCCATCATCCC CGCCTACGACACGCTGGATGACCAGGCGGCGGGGCTTCTCGACGCGACGC AAACCCTGTGCGATGCGCCCTCCGATGCCACGGTCGACGCCGCACGCGAC GCGATGACAGCCACGCGCGATGCCTGGCTGTCGAGCGAAGCCCTCTGGGT CGGCCCGGTCATGGAGCGCCGTTCGTGGGCCGTGGTCGACTGGCCGATCG CCGCCGACGAGATCGAGGCGCTCATCGCCGACGAGTCGATCGTGCTCGAC AACGATCGCCTCAGCCGTCGTATCGGCGCCGACCAGCGCGGCCTCCAGGC GGTCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85677:3..859+

>mRNA_M-pyrifera_M_contig85677.19974.1 ID=mRNA_M-pyrifera_M_contig85677.19974.1|Name=mRNA_M-pyrifera_M_contig85677.19974.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig85677:3..859+ (Macrocystis pyrifera P11B4 male)
ATGCGCTCTACGACGCCGCGCCGGTTCGTGAGAGTGGTCCTCGCCGGCTC
CTTGGCGCTCGCCGCCTGTGGGAGCGACACCCCCGATCGGGGCGATGTGC
TGCTCGACCTGGCCGATGCGTCCATCATCCCCGCCTACGACACGCTGGAT
GACCAGGCGGCGGGGCTTCTCGACGCGACGCAAACCCTGTGCGATGCGCC
CTCCGATGCCACGGTCGACGCCGCACGCGACGCGATGACAGCCACGCGCG
ATGCCTGGCTGTCGAGCGAAGCCCTCTGGGTCGGCCCGGTCATGGAGCGC
CGTTCGTGGGCCGTGGTCGACTGGCCGATCGCCGCCGACGAGATCGAGGC
GCTCATCGCCGACGAGTCGATCGTGCTCGACAACGATCGCCTCAGCCGTC
GTATCGGCGCCGACCAGCGCGGCCTCCAGGCGGTCGAGATGCGCTCTACG
ACGCCGCGCCGGTTCGTGAGAGTGGTCCTCGCCGGCTCCTTGGCGCTCGC
CGCCTGTGGGAGCGACACCCCCGATCGGGGCGATGTGCTGCTCGACCTGG
CCGATGCGTCCATCATCCCCGCCTACGACACGCTGGATGACCAGGCGGCG
GGGCTTCTCGACGCGACGCAAACCCTGTGCGATGCGCCCTCCGATGCCAC
GGTCGACGCCGCACGCGACGCGATGACAGCCACGCGCGATGCCTGGCTGT
CGAGCGAAGCCCTCTGGGTCGGCCCGGTCATGGAGCGCCGTTCGTGGGCC
GTGGTCGACTGGCCGATCGCCGCCGACGAGATCGAGGCGCTCATCGCCGA
CGAGTCGATCGTGCTCGACAACGATCGCCTCAGCCGTCGTATCGGCGCCG
ACCAGCGCGGCCTCCAGGCGGTCGAG
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