mRNA_M-pyrifera_M_contig85440.19918.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85440.19918.1
Unique NamemRNA_M-pyrifera_M_contig85440.19918.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: A0A8J7CZG2_DESMC (Cupin-like domain-containing protein n=1 Tax=Desmonostoc muscorum LEGE 12446 TaxID=1828758 RepID=A0A8J7CZG2_DESMC)

HSP 1 Score: 56.6 bits (135), Expect = 3.040e-8
Identity = 22/61 (36.07%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    4 LAGTKSWIVCPPSDSPFLYDGSRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            ++G+K +++  P    F+YDG + DAF+PD+++FPL   A  +   ++ GE+L    +WWH
Sbjct:   65 ISGSKRFVLLSPDQQKFVYDG-QVDAFKPDLEKFPLYANAKPVEFLLNSGEILYIPSMWWH 124          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: A0A1D8TM94_9CYAN (Uncharacterized protein n=9 Tax=Moorena TaxID=1155738 RepID=A0A1D8TM94_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 3.260e-8
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDGSRFDAFRPDMDRFPLLKKASCMRGTV-HPGELLIYGKLWWH 186
            Q++G K WI+ PP D  ++YDG + D   PD+ ++PL   AS     V  PGE+LI    WWH
Sbjct:  442 QISGRKRWIIHPPEDEKWMYDG-QVDLTNPDLVKYPLYMNASAPYDFVLEPGEVLILPNAWWH 503          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: A0A8E0L3U0_BURTH (JmjC domain protein n=4 Tax=Burkholderia TaxID=32008 RepID=A0A8E0L3U0_BURTH)

HSP 1 Score: 57.4 bits (137), Expect = 3.300e-8
Identity = 25/61 (40.98%), Postives = 33/61 (54.10%), Query Frame = 1
Query:    4 LAGTKSWIVCPPSDSPFLYDGSRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
              G+K W+V  P  +  +Y G+  DAFRPD+DRFPL   A        PGE++     WWH
Sbjct:  160 FVGSKRWLVYSPDQAQCMYRGA-VDAFRPDLDRFPLFANARAHMHVQQPGEIVYMPATWWH 219          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: G4M3V4_9BURK (JmjC domain protein n=2 Tax=Candidatus Paraburkholderia kirkii TaxID=198822 RepID=G4M3V4_9BURK)

HSP 1 Score: 56.2 bits (134), Expect = 8.730e-8
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 1
Query:    4 LAGTKSWIVCPPSDSPFLYDGSRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
              G+K W    P  + ++Y G+  DAFRPD+DRFPL   A        PGE++     WWH
Sbjct:  160 FVGSKRWFAYSPDQAQYMYRGA-VDAFRPDLDRFPLFAHARAHIHVQQPGEIMYIPATWWH 219          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: UPI00112D7B35 (HSPB1-associated protein 1 isoform X2 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112D7B35)

HSP 1 Score: 56.2 bits (134), Expect = 1.130e-7
Identity = 25/72 (34.72%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDG----------SRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            Q+ G K W + PP D+ FLY            S+ +   PD++RFP  + A     T+HPG++L+  + WWH
Sbjct:  175 QVQGRKRWHLFPPEDTAFLYPTRIPYEESSVFSKVNVVNPDLNRFPQFRNAQAHVVTLHPGQVLVVPRHWWH 246          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: UPI00112B1665 (HSPB1-associated protein 1 isoform X1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112B1665)

HSP 1 Score: 56.2 bits (134), Expect = 1.130e-7
Identity = 25/72 (34.72%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDG----------SRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            Q+ G K W + PP D+ FLY            S+ +   PD++RFP  + A     T+HPG++L+  + WWH
Sbjct:  195 QVQGRKRWHLFPPEDTAFLYPTRIPYEESSVFSKVNVVNPDLNRFPQFRNAQAHVVTLHPGQVLVVPRHWWH 266          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: A0A1B8Y1H7_XENTR (JmjC domain-containing protein n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A1B8Y1H7_XENTR)

HSP 1 Score: 55.8 bits (133), Expect = 1.540e-7
Identity = 25/72 (34.72%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDG----------SRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            Q+ G K+W + PP D+P +Y            S+ +   PD  RFPL  + S    T+HPG++L+  + WWH
Sbjct:  149 QVQGRKTWHLYPPGDTPHMYPTRIPYEESSIFSKVNVVNPDRSRFPLFSRTSPHVVTLHPGQVLLVPRHWWH 220          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: A0A803JBG1_XENTR (HSPB (heat shock 27kDa)-associated protein 1 n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A803JBG1_XENTR)

HSP 1 Score: 55.8 bits (133), Expect = 1.540e-7
Identity = 25/72 (34.72%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDG----------SRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            Q+ G K+W + PP D+P +Y            S+ +   PD  RFPL  + S    T+HPG++L+  + WWH
Sbjct:  175 QVQGRKTWHLYPPGDTPHMYPTRIPYEESSIFSKVNVVNPDRSRFPLFSRTSPHVVTLHPGQVLLVPRHWWH 246          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: UPI00064AF70C (HSPB1-associated protein 1 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00064AF70C)

HSP 1 Score: 54.3 bits (129), Expect = 5.420e-7
Identity = 26/72 (36.11%), Postives = 37/72 (51.39%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDG----------SRFDAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            Q+ G K W + PP D+PFLY            S+ +   PD+ RFP   KA      +HPG++L+  + WWH
Sbjct:  179 QVQGRKRWHLFPPEDTPFLYPTRIPYEESSVFSKINVTNPDLKRFPQFWKARRHVVILHPGQVLLVPRHWWH 250          
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Match: A0A0Q6X4A2_9BURK (Transcription factor jumonji n=1 Tax=Rhizobacter sp. Root1221 TaxID=1736433 RepID=A0A0Q6X4A2_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 9.850e-7
Identity = 23/69 (33.33%), Postives = 36/69 (52.17%), Query Frame = 1
Query:    1 QLAGTKSWIVCPPSDSPFLYDGSRF-------DAFRPDMDRFPLLKKASCMRGTVHPGELLIYGKLWWH 186
            ++ G K +++ PP D P LY   +        +   PD+ RFPLL KA+  R  + PG+++     WWH
Sbjct:  174 EVYGDKEFVMFPPEDGPLLYANPKLPNRSLIDNLNEPDLQRFPLLAKATRYRAVLRPGDMVFVPSRWWH 242          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85440.19918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A8J7CZG2_DESMC3.040e-836.07Cupin-like domain-containing protein n=1 Tax=Desmo... [more]
A0A1D8TM94_9CYAN3.260e-842.86Uncharacterized protein n=9 Tax=Moorena TaxID=1155... [more]
A0A8E0L3U0_BURTH3.300e-840.98JmjC domain protein n=4 Tax=Burkholderia TaxID=320... [more]
G4M3V4_9BURK8.730e-839.34JmjC domain protein n=2 Tax=Candidatus Paraburkhol... [more]
UPI00112D7B351.130e-734.72HSPB1-associated protein 1 isoform X2 n=1 Tax=Rhin... [more]
UPI00112B16651.130e-734.72HSPB1-associated protein 1 isoform X1 n=1 Tax=Rhin... [more]
A0A1B8Y1H7_XENTR1.540e-734.72JmjC domain-containing protein n=1 Tax=Xenopus tro... [more]
A0A803JBG1_XENTR1.540e-734.72HSPB (heat shock 27kDa)-associated protein 1 n=2 T... [more]
UPI00064AF70C5.420e-736.11HSPB1-associated protein 1 n=1 Tax=Sorex araneus T... [more]
A0A0Q6X4A2_9BURK9.850e-733.33Transcription factor jumonji n=1 Tax=Rhizobacter s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85440contigM-pyrifera_M_contig85440:24..209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog391603.FBALC1_11332
Preferred namejmjC
KEGG koko:K10277,ko:K18055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SMART transcription factor jumonji
EggNOG OGs4NEJI@976,COG2850@1,COG2850@2
EC1.14.11.27,1.14.11.30
COG Functional cat.S
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.6794393-CDS-M-pyrifera_M_contig85440:23..2091622816763.6794393-CDS-M-pyrifera_M_contig85440:23..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85440 24..209 +
1692278164.2334156-CDS-M-pyrifera_M_contig85440:23..2091692278164.2334156-CDS-M-pyrifera_M_contig85440:23..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85440 24..209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85440.19918.1prot_M-pyrifera_M_contig85440.19918.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85440 24..209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85440.19918.1

>prot_M-pyrifera_M_contig85440.19918.1 ID=prot_M-pyrifera_M_contig85440.19918.1|Name=mRNA_M-pyrifera_M_contig85440.19918.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
QLAGTKSWIVCPPSDSPFLYDGSRFDAFRPDMDRFPLLKKASCMRGTVHP
GELLIYGKLWWH
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mRNA from alignment at M-pyrifera_M_contig85440:24..209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85440.19918.1 ID=mRNA_M-pyrifera_M_contig85440.19918.1|Name=mRNA_M-pyrifera_M_contig85440.19918.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig85440:24..209+ (Macrocystis pyrifera P11B4 male)
CAGCTGGCAGGCACCAAGTCATGGATTGTGTGTCCACCTTCCGATTCTCC GTTCCTGTATGATGGCTCTCGTTTTGATGCATTTCGACCTGATATGGACA GATTTCCACTCCTCAAGAAAGCCAGCTGCATGCGAGGTACGGTTCATCCA GGGGAACTCCTCATCTATGGCAAGCTATGGTGGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85440:24..209+

>mRNA_M-pyrifera_M_contig85440.19918.1 ID=mRNA_M-pyrifera_M_contig85440.19918.1|Name=mRNA_M-pyrifera_M_contig85440.19918.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig85440:24..209+ (Macrocystis pyrifera P11B4 male)
CAGCTGGCAGGCACCAAGTCATGGATTGTGTGTCCACCTTCCGATTCTCC
GTTCCTGTATGATGGCTCTCGTTTTGATGCATTTCGACCTGATATGGACA
GATTTCCACTCCTCAAGAAAGCCAGCTGCATGCGAGGTACGGTTCATCCA
GGGGAACTCCTCATCTATGGCAAGCTATGGTGGCACCAGCTGGCAGGCAC
CAAGTCATGGATTGTGTGTCCACCTTCCGATTCTCCGTTCCTGTATGATG
GCTCTCGTTTTGATGCATTTCGACCTGATATGGACAGATTTCCACTCCTC
AAGAAAGCCAGCTGCATGCGAGGTACGGTTCATCCAGGGGAACTCCTCAT
CTATGGCAAGCTATGGTGGCAC
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