mRNA_M-pyrifera_M_contig109500.1990.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109500.1990.1
Unique NamemRNA_M-pyrifera_M_contig109500.1990.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A0G4FWI2_VITBC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FWI2_VITBC)

HSP 1 Score: 89.4 bits (220), Expect = 1.220e-21
Identity = 39/72 (54.17%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLSKT-VRAEPLKPIVH 222
            GTLRG DQ+TNVI++ A ER+Y+ D+ VE++  GL++ RGDN+AI+GE+D  +D+++  T +RA PLKP+VH
Sbjct:   25 GTLRGFDQTTNVILQDASERVYSQDQGVEEIQLGLYVVRGDNIAIIGEIDDVIDSEIDHTTIRAAPLKPVVH 96          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A8J5XFD0_DIALT (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD0_DIALT)

HSP 1 Score: 89.0 bits (219), Expect = 1.730e-21
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            G L+G DQ TNV+++ + ER++  D PVE VP GL+L RGDN+A++GE+D  +DA+L   T+ A+PLKPIVH
Sbjct:   25 GVLKGYDQKTNVVLDESHERVFAADAPVEQVPLGLYLVRGDNIAVIGEIDEELDAELDLSTIVAQPLKPIVH 96          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.320e-21
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            G LRG DQ+TN+I+E   ERI+  DE VE+VP GL++ RGDNVA++GELD AM   L    +RA+PLKP+VH
Sbjct:   36 GNLRGYDQTTNLILENCHERIFAPDEGVEEVPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A7S0Z605_9CRYP (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z605_9CRYP)

HSP 1 Score: 85.9 bits (211), Expect = 3.090e-20
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            G+L+G+DQ  NVIVE A ERI++ D+ VE VP GL++ RGDN+AI+GELD   D Q   KTV A+PLK IVH
Sbjct:   28 GSLKGLDQKLNVIVEEAHERIFSKDQGVEKVPLGLYIVRGDNIAIIGELDEEADGQTDWKTVLADPLKHIVH 99          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A194S7Z2_RHOGW (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Rhodotorula TaxID=5533 RepID=A0A194S7Z2_RHOGW)

HSP 1 Score: 85.5 bits (210), Expect = 3.940e-20
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            V  G L+G DQ+TNVI+ G+ ER+++ DEPVE+VP G+++ RGDN+ ++GE+D  +D Q+   TVRAEP+  + H
Sbjct:   21 VIVGELKGFDQTTNVILSGSVERVFSADEPVEEVPLGVYIVRGDNITLIGEVDTELDKQVDLATVRAEPISELQH 95          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A0G4G219_9ALVE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G219_9ALVE)

HSP 1 Score: 83.6 bits (205), Expect = 2.330e-19
Identity = 38/75 (50.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            V  GTL+G DQ+TN++VE   ER+Y+ + PVE +  GL L RGDN+A++GE+D  +D+Q+  K+VRA P++P+VH
Sbjct:   22 VFMGTLKGFDQATNLVVEHCSERVYSEEGPVEKLQIGLQLIRGDNIAVIGEVDVEVDSQIDPKSVRAAPIRPVVH 96          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: M7WWR8_RHOT1 (U6 snRNA-associated Sm-like protein LSm8 n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WWR8_RHOT1)

HSP 1 Score: 82.8 bits (203), Expect = 4.570e-19
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            V  G LRG DQ+TNVI+ G+ ER+++ DE VE+VP G+++ RGDN+ ++GE+D  +D Q+   TVRAEP+  + H
Sbjct:   21 VIVGELRGFDQTTNVILSGSTERVFSSDEGVEEVPLGVYIVRGDNITLIGEVDEDVDKQIDLSTVRAEPIAEVQH 95          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A1Y2G4I7_9BASI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G4I7_9BASI)

HSP 1 Score: 82.4 bits (202), Expect = 6.490e-19
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            G L+G DQ+TNVI+  + ER+Y+ DE VE V  GL++ RGDN+ ++GELDP  DAQ+   T+RA+P++ IVH
Sbjct:   24 GELKGFDQTTNVILSHSSERVYSIDEGVEQVELGLYVVRGDNITLIGELDPEADAQVDLSTIRADPIQEIVH 95          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: C1E546_MICCC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E546_MICCC)

HSP 1 Score: 82.0 bits (201), Expect = 9.460e-19
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
            G LRG DQ+TN+I+E  FER+Y+ D  VE    GL++ RGDN+AI+GELD  +DA+L     RA PLK IVH
Sbjct:   25 GILRGFDQTTNLILEECFERVYSEDSGVEQAVLGLYIIRGDNIAIIGELDEELDAELDLANTRAPPLKAIVH 96          
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: C1MPE7_MICPC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MPE7_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 1.340e-18
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLSKT-VRAEPLKPIVH 222
            G LRG DQ+TN+I++  FER+Y+    VE+ P GL++ RGDN+A++GE+D  MDA L  + ++A PLK I H
Sbjct:   25 GVLRGFDQTTNLILDECFERVYSASSGVEEAPLGLYIIRGDNIAVIGEIDDEMDANLDYSQIKAPPLKSIAH 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4FWI2_VITBC1.220e-2154.17U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=V... [more]
A0A8J5XFD0_DIALT1.730e-2154.17U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=D... [more]
A0A7R9Y9D5_9STRA3.320e-2158.33U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]
A0A7S0Z605_9CRYP3.090e-2059.72U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=H... [more]
A0A194S7Z2_RHOGW3.940e-2049.33U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=R... [more]
A0A0G4G219_9ALVE2.330e-1950.67U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=C... [more]
M7WWR8_RHOT14.570e-1949.33U6 snRNA-associated Sm-like protein LSm8 n=4 Tax=R... [more]
A0A1Y2G4I7_9BASI6.490e-1952.78U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=L... [more]
C1E546_MICCC9.460e-1955.56U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=M... [more]
C1MPE7_MICPC1.340e-1850.00U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109500contigM-pyrifera_M_contig109500:118..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.8
Seed ortholog evalue7.5e-14
Seed eggNOG ortholog5286.M7WWR8
Preferred namelsm8
KEGG koko:K12627
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005688,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030532,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0071011,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snRNP Sm proteins
EggNOG OGs2YEMF@29000,3A88G@33154,3P6PA@4751,3V1NF@5204,KOG1784@1,KOG1784@2759
COG Functional cat.A
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.4012787-CDS-M-pyrifera_M_contig109500:117..2051622815605.4012787-CDS-M-pyrifera_M_contig109500:117..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109500 118..205 -
1692277484.0501254-CDS-M-pyrifera_M_contig109500:117..2051692277484.0501254-CDS-M-pyrifera_M_contig109500:117..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109500 118..205 -
1622815605.4141421-CDS-M-pyrifera_M_contig109500:335..4721622815605.4141421-CDS-M-pyrifera_M_contig109500:335..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109500 336..472 -
1692277484.06711-CDS-M-pyrifera_M_contig109500:335..4721692277484.06711-CDS-M-pyrifera_M_contig109500:335..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109500 336..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109500.1990.1prot_M-pyrifera_M_contig109500.1990.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109500 118..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109500.1990.1

>prot_M-pyrifera_M_contig109500.1990.1 ID=prot_M-pyrifera_M_contig109500.1990.1|Name=mRNA_M-pyrifera_M_contig109500.1990.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILG
ELDPAMDAQLSKTVRAEPLKPIVH*
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mRNA from alignment at M-pyrifera_M_contig109500:118..472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109500.1990.1 ID=mRNA_M-pyrifera_M_contig109500.1990.1|Name=mRNA_M-pyrifera_M_contig109500.1990.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=355bp|location=Sequence derived from alignment at M-pyrifera_M_contig109500:118..472- (Macrocystis pyrifera P11B4 male)
GTCGCACAGGGCACACTGCGAGGAGTGGACCAGAGCACGAACGTGATCGT GGAGGGAGCGTTCGAACGCATCTACAACGGCGACGAGCCCGTGGAAGACG TCCCCTTTGGCCTCTTCCTTGCTCGAGGCGACAACGTGTATGCGCATGGC TTCTGCTCGCTCCCTCAGCTCTCCCCTCTCGTTCCGCCTCGCTGGCTCTC GTTCGCTCTTCCCCGCGATATCTCTGCCCCGTCTTAAGCAGTGGGCTGTG CTGACGGTGTTGGGTAGAGCCATTCTCGGCGAGTTGGACCCTGCTATGGA CGCACAGCTGTCCAAGACAGTGCGTGCAGAGCCCTTGAAGCCAATCGTTC ATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109500:118..472-

>mRNA_M-pyrifera_M_contig109500.1990.1 ID=mRNA_M-pyrifera_M_contig109500.1990.1|Name=mRNA_M-pyrifera_M_contig109500.1990.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig109500:118..472- (Macrocystis pyrifera P11B4 male)
GTCGCACAGGGCACACTGCGAGGAGTGGACCAGAGCACGAACGTGATCGT
GGAGGGAGCGTTCGAACGCATCTACAACGGCGACGAGCCCGTGGAAGACG
TCCCCTTTGGCCTCTTCCTTGCTCGAGGCGACAACGTGTCGCACAGGGCA
CACTGCGAGGAGTGGACCAGAGCACGAACGTGATCGTGGAGGGAGCGTTC
GAACGCATCTACAACGGCGACGAGCCCGTGGAAGACGTCCCCTTTGGCCT
CTTCCTTGCTCGAGGCGACAACGTAGCCATTCTCGGCGAGTTGGACCCTG
CTATGGACGCACAGCTGTCCAAGACAGTGCGTGCAGAGCCCTTGAAGCCA
ATCGTTCATTAGAGCCATTCTCGGCGAGTTGGACCCTGCTATGGACGCAC
AGCTGTCCAAGACAGTGCGTGCAGAGCCCTTGAAGCCAATCGTTCATTAG
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