mRNA_M-pyrifera_M_contig109500.1990.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A0G4FWI2_VITBC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FWI2_VITBC) HSP 1 Score: 89.4 bits (220), Expect = 1.220e-21 Identity = 39/72 (54.17%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLSKT-VRAEPLKPIVH 222
GTLRG DQ+TNVI++ A ER+Y+ D+ VE++ GL++ RGDN+AI+GE+D +D+++ T +RA PLKP+VH
Sbjct: 25 GTLRGFDQTTNVILQDASERVYSQDQGVEEIQLGLYVVRGDNIAIIGEIDDVIDSEIDHTTIRAAPLKPVVH 96
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A8J5XFD0_DIALT (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD0_DIALT) HSP 1 Score: 89.0 bits (219), Expect = 1.730e-21 Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
G L+G DQ TNV+++ + ER++ D PVE VP GL+L RGDN+A++GE+D +DA+L T+ A+PLKPIVH
Sbjct: 25 GVLKGYDQKTNVVLDESHERVFAADAPVEQVPLGLYLVRGDNIAVIGEIDEELDAELDLSTIVAQPLKPIVH 96
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.320e-21 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
G LRG DQ+TN+I+E ERI+ DE VE+VP GL++ RGDNVA++GELD AM L +RA+PLKP+VH
Sbjct: 36 GNLRGYDQTTNLILENCHERIFAPDEGVEEVPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A7S0Z605_9CRYP (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z605_9CRYP) HSP 1 Score: 85.9 bits (211), Expect = 3.090e-20 Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
G+L+G+DQ NVIVE A ERI++ D+ VE VP GL++ RGDN+AI+GELD D Q KTV A+PLK IVH
Sbjct: 28 GSLKGLDQKLNVIVEEAHERIFSKDQGVEKVPLGLYIVRGDNIAIIGELDEEADGQTDWKTVLADPLKHIVH 99
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A194S7Z2_RHOGW (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Rhodotorula TaxID=5533 RepID=A0A194S7Z2_RHOGW) HSP 1 Score: 85.5 bits (210), Expect = 3.940e-20 Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 1 VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
V G L+G DQ+TNVI+ G+ ER+++ DEPVE+VP G+++ RGDN+ ++GE+D +D Q+ TVRAEP+ + H
Sbjct: 21 VIVGELKGFDQTTNVILSGSVERVFSADEPVEEVPLGVYIVRGDNITLIGEVDTELDKQVDLATVRAEPISELQH 95
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A0G4G219_9ALVE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G219_9ALVE) HSP 1 Score: 83.6 bits (205), Expect = 2.330e-19 Identity = 38/75 (50.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 1 VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
V GTL+G DQ+TN++VE ER+Y+ + PVE + GL L RGDN+A++GE+D +D+Q+ K+VRA P++P+VH
Sbjct: 22 VFMGTLKGFDQATNLVVEHCSERVYSEEGPVEKLQIGLQLIRGDNIAVIGEVDVEVDSQIDPKSVRAAPIRPVVH 96
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: M7WWR8_RHOT1 (U6 snRNA-associated Sm-like protein LSm8 n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=M7WWR8_RHOT1) HSP 1 Score: 82.8 bits (203), Expect = 4.570e-19 Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 1 VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
V G LRG DQ+TNVI+ G+ ER+++ DE VE+VP G+++ RGDN+ ++GE+D +D Q+ TVRAEP+ + H
Sbjct: 21 VIVGELRGFDQTTNVILSGSTERVFSSDEGVEEVPLGVYIVRGDNITLIGEVDEDVDKQIDLSTVRAEPIAEVQH 95
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: A0A1Y2G4I7_9BASI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G4I7_9BASI) HSP 1 Score: 82.4 bits (202), Expect = 6.490e-19 Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
G L+G DQ+TNVI+ + ER+Y+ DE VE V GL++ RGDN+ ++GELDP DAQ+ T+RA+P++ IVH
Sbjct: 24 GELKGFDQTTNVILSHSSERVYSIDEGVEQVELGLYVVRGDNITLIGELDPEADAQVDLSTIRADPIQEIVH 95
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: C1E546_MICCC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E546_MICCC) HSP 1 Score: 82.0 bits (201), Expect = 9.460e-19 Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLS-KTVRAEPLKPIVH 222
G LRG DQ+TN+I+E FER+Y+ D VE GL++ RGDN+AI+GELD +DA+L RA PLK IVH
Sbjct: 25 GILRGFDQTTNLILEECFERVYSEDSGVEQAVLGLYIIRGDNIAIIGELDEELDAELDLANTRAPPLKAIVH 96
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Match: C1MPE7_MICPC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MPE7_MICPC) HSP 1 Score: 81.6 bits (200), Expect = 1.340e-18 Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 10 GTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGELDPAMDAQLSKT-VRAEPLKPIVH 222
G LRG DQ+TN+I++ FER+Y+ VE+ P GL++ RGDN+A++GE+D MDA L + ++A PLK I H
Sbjct: 25 GVLRGFDQTTNLILDECFERVYSASSGVEEAPLGLYIIRGDNIAVIGEIDDEMDANLDYSQIKAPPLKSIAH 96 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109500.1990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig109500.1990.1 >prot_M-pyrifera_M_contig109500.1990.1 ID=prot_M-pyrifera_M_contig109500.1990.1|Name=mRNA_M-pyrifera_M_contig109500.1990.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp VAQGTLRGVDQSTNVIVEGAFERIYNGDEPVEDVPFGLFLARGDNVAILGback to top mRNA from alignment at M-pyrifera_M_contig109500:118..472- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig109500.1990.1 ID=mRNA_M-pyrifera_M_contig109500.1990.1|Name=mRNA_M-pyrifera_M_contig109500.1990.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=355bp|location=Sequence derived from alignment at M-pyrifera_M_contig109500:118..472- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig109500:118..472- >mRNA_M-pyrifera_M_contig109500.1990.1 ID=mRNA_M-pyrifera_M_contig109500.1990.1|Name=mRNA_M-pyrifera_M_contig109500.1990.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig109500:118..472- (Macrocystis pyrifera P11B4 male)back to top |