mRNA_M-pyrifera_M_contig85150.19844.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85150.19844.1
Unique NamemRNA_M-pyrifera_M_contig85150.19844.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: UPI001BD635FA (glycosyltransferase n=1 Tax=Nocardioides aquaticus TaxID=160826 RepID=UPI001BD635FA)

HSP 1 Score: 103 bits (258), Expect = 1.160e-24
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    4 IAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            +A+ HEW+SARAGSE+VFE LA  +P ADL+ALT  P V L+TG R +RT++L R   +R  R LTLPLMP AW     G +YD +V
Sbjct:    9 MAIAHEWISARAGSEKVFEALAATYPEADLYALTRTPGVDLETGGRPVRTTFLDRLGPIRDRRGLTLPLMPLAWRNAGGGRRYDTVV 95          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: A0A4S5ADQ2_9ACTN (Glycosyltransferase family 4 protein n=2 Tax=Nocardioides sp. TaxID=35761 RepID=A0A4S5ADQ2_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 7.740e-23
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            R+A+ HEWVSARAGSE+VFE LAR F  ADL+ALT  P V LDT  R+IRT+ L R   LR  R L LP+MP AW  ++   +YD ++
Sbjct:   22 RMAIAHEWVSARAGSEKVFEELARVFTEADLYALTMTPGVELDTDARDIRTTILDRLGTLRDRRDLLLPVMPLAWRVMATNERYDTVI 109          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: UPI00141363F7 (glycosyltransferase n=1 Tax=Kineococcus indalonis TaxID=2696566 RepID=UPI00141363F7)

HSP 1 Score: 97.1 bits (240), Expect = 5.810e-22
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            R AVVHEWV+ARAG+EQVFE LA  +P ADL+AL+  P V L+ G R +RT+ L      R  RA TLPLMP AW  + RG  YDL+V
Sbjct:   21 RTAVVHEWVAARAGAEQVFEALAATWPEADLYALSRAPGVPLELGGRTVRTTALDHPL-TRDRRAATLPLMPLAWRALGRGQGYDLVV 107          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: A0A8F9WQM5_9MYCO (Glycosyltransferase n=1 Tax=Mycobacterium pallens TaxID=370524 RepID=A0A8F9WQM5_9MYCO)

HSP 1 Score: 96.3 bits (238), Expect = 9.960e-22
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            R+AVVHEWV A  GS+QVFE LA+  P+ADL+AL+  PDV LD G R   T++L  SA LRS R LTLPLMP AW ++     YDL++
Sbjct:   14 RVAVVHEWVDAYTGSDQVFEALAKLIPSADLYALSLQPDVQLDFGGRTATTTFLD-SATLRSRRGLTLPLMPLAWRKLG-SHNYDLVI 99          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: UPI001F57C2FD (glycosyltransferase n=1 Tax=Kineococcus sp. TRM81007 TaxID=2925831 RepID=UPI001F57C2FD)

HSP 1 Score: 96.3 bits (238), Expect = 1.150e-21
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            R AVVHEWV+ARAG+EQVFE LA  +P ADL+AL+  P   LD   R +RT+ L R+A  R  RALTLPLMP AW  + RG  YDL+V
Sbjct:   22 RTAVVHEWVAARAGAEQVFEALAGTWPDADLYALSRAPGTHLDVQGRPVRTTALDRAA-TRERRALTLPLMPLAWRALGRG-DYDLVV 107          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: UPI0015CB15BC (glycosyltransferase n=2 Tax=Nocardioides marinisabuli TaxID=419476 RepID=UPI0015CB15BC)

HSP 1 Score: 91.7 bits (226), Expect = 4.510e-20
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    7 AVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            A+ HEW+SARAGSE+VFE LA  +P ADL++LT  P V L+T  R I TS++ R   LR NR  +LPLMP AW  + +  +YD ++
Sbjct:    4 AIAHEWISARAGSEKVFEALADIYPQADLYSLTHTPGVPLETQGRPIETSFIDRVDFLRDNRNFSLPLMPLAWRMLGKHNQYDRVL 89          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: A0A2T0QYG0_9ACTN (Glycosyltransferase involved in cell wall biosynthesis n=2 Tax=Kineococcus rhizosphaerae TaxID=559628 RepID=A0A2T0QYG0_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 4.170e-19
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAK--YDLIV 264
            R A+VHEW++ARAG+EQVFE LA  +P ADL ALT +P V LD G R +RT+ L      R +RALTLPLMP AW   +R  +  YDL+V
Sbjct:   12 RTALVHEWIAARAGAEQVFEVLAGLWPRADLHALTAEPGVRLDLGGRAVRTTALDP---WRHHRALTLPLMPAAWAAHARDVQRSYDLVV 98          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: UPI0014134086 (glycosyltransferase n=1 Tax=Kineococcus vitellinus TaxID=2696565 RepID=UPI0014134086)

HSP 1 Score: 88.6 bits (218), Expect = 7.820e-19
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGA--KYDLIV 264
            R A+VHEW++ARAG+EQVFE LA  +P ADL AL+  P V L+ G R +RT+ L  +A LR  RAL LPLMP AW   +R    +YDL+V
Sbjct:   18 RTALVHEWIAARAGAEQVFEVLAGMWPQADLHALSAAPGVRLELGGRRVRTTALD-AAPLRERRALALPLMPLAWRAHAREVQGRYDLVV 106          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: A6W3X2_KINRD (Glycosyl transferase group 1 n=2 Tax=Kineococcus radiotolerans TaxID=131568 RepID=A6W3X2_KINRD)

HSP 1 Score: 85.1 bits (209), Expect = 1.300e-17
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAK--YDLIV 264
            R A+VHEW+SARAG+EQVFE LA  FP ADL AL+ +P V LD   R +RT+ L     LR +RAL LPLM  AW   +R  +  YDL++
Sbjct:    9 RTALVHEWISARAGAEQVFEVLAGQFPHADLHALSCEPGVDLDLAGRTVRTTALDA---LRGHRALALPLMAPAWWAHARDVRGGYDLVL 95          
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Match: A0A1Y6CSE3_9GAMM (Uncharacterized protein n=2 Tax=Methylomagnum ishizawai TaxID=1760988 RepID=A0A1Y6CSE3_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 4.870e-11
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1
Query:    1 RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDR------EIRTSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV 264
            R+AVVHEW+ +RAGSE+V E++ + +P ADLFAL       LD G+R      + RTS++QR  R R+     LPLMP A  +    + YDL++
Sbjct:   32 RVAVVHEWLVSRAGSEKVLEQILKVYPQADLFALVD----FLDEGERAFLEGRQARTSFIQRLPRARTCYRHYLPLMPLAVEQFDV-SDYDLVI 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85150.19844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BD635FA1.160e-2455.17glycosyltransferase n=1 Tax=Nocardioides aquaticus... [more]
A0A4S5ADQ2_9ACTN7.740e-2355.68Glycosyltransferase family 4 protein n=2 Tax=Nocar... [more]
UPI00141363F75.810e-2256.82glycosyltransferase n=1 Tax=Kineococcus indalonis ... [more]
A0A8F9WQM5_9MYCO9.960e-2256.82Glycosyltransferase n=1 Tax=Mycobacterium pallens ... [more]
UPI001F57C2FD1.150e-2159.09glycosyltransferase n=1 Tax=Kineococcus sp. TRM810... [more]
UPI0015CB15BC4.510e-2051.16glycosyltransferase n=2 Tax=Nocardioides marinisab... [more]
A0A2T0QYG0_9ACTN4.170e-1955.56Glycosyltransferase involved in cell wall biosynth... [more]
UPI00141340867.820e-1954.44glycosyltransferase n=1 Tax=Kineococcus vitellinus... [more]
A6W3X2_KINRD1.300e-1753.33Glycosyl transferase group 1 n=2 Tax=Kineococcus r... [more]
A0A1Y6CSE3_9GAMM4.870e-1143.62Uncharacterized protein n=2 Tax=Methylomagnum ishi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85150contigM-pyrifera_M_contig85150:605..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog266940.Krad_0019
Preferred namewcnD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glycosyl transferase group 1
EggNOG OGs2GJI0@201174,COG0438@1,COG0438@2
COG Functional cat.M
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.6425867-CDS-M-pyrifera_M_contig85150:604..8681622816759.6425867-CDS-M-pyrifera_M_contig85150:604..868Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85150 605..868 +
1692278161.7879655-CDS-M-pyrifera_M_contig85150:604..8681692278161.7879655-CDS-M-pyrifera_M_contig85150:604..868Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85150 605..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85150.19844.1prot_M-pyrifera_M_contig85150.19844.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85150 605..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85150.19844.1

>prot_M-pyrifera_M_contig85150.19844.1 ID=prot_M-pyrifera_M_contig85150.19844.1|Name=mRNA_M-pyrifera_M_contig85150.19844.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
RIAVVHEWVSARAGSEQVFERLARNFPTADLFALTTDPDVALDTGDREIR
TSYLQRSARLRSNRALTLPLMPHAWNRISRGAKYDLIV
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mRNA from alignment at M-pyrifera_M_contig85150:605..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85150.19844.1 ID=mRNA_M-pyrifera_M_contig85150.19844.1|Name=mRNA_M-pyrifera_M_contig85150.19844.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig85150:605..868+ (Macrocystis pyrifera P11B4 male)
CGCATCGCTGTTGTTCACGAATGGGTATCGGCGCGCGCAGGATCGGAACA AGTTTTCGAGCGTCTCGCTAGGAACTTTCCAACTGCGGATCTCTTCGCGC TCACCACCGATCCCGATGTTGCGTTGGACACCGGCGATCGAGAGATACGC ACCAGCTATCTCCAACGATCTGCTCGACTTCGTAGCAATCGAGCACTCAC ATTACCTTTGATGCCGCATGCCTGGAATCGGATAAGCCGTGGCGCCAAGT ACGATCTAATAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85150:605..868+

>mRNA_M-pyrifera_M_contig85150.19844.1 ID=mRNA_M-pyrifera_M_contig85150.19844.1|Name=mRNA_M-pyrifera_M_contig85150.19844.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig85150:605..868+ (Macrocystis pyrifera P11B4 male)
CGCATCGCTGTTGTTCACGAATGGGTATCGGCGCGCGCAGGATCGGAACA
AGTTTTCGAGCGTCTCGCTAGGAACTTTCCAACTGCGGATCTCTTCGCGC
TCACCACCGATCCCGATGTTGCGTTGGACACCGGCGATCGAGAGATACGC
ACCAGCTATCTCCAACGATCTGCTCGACTTCGTAGCAATCGAGCACTCAC
ATTACCTTTGATGCCGCATGCCTGGAATCGGATAAGCCGTGGCGCCAAGT
ACGATCTAATAGTCCGCATCGCTGTTGTTCACGAATGGGTATCGGCGCGC
GCAGGATCGGAACAAGTTTTCGAGCGTCTCGCTAGGAACTTTCCAACTGC
GGATCTCTTCGCGCTCACCACCGATCCCGATGTTGCGTTGGACACCGGCG
ATCGAGAGATACGCACCAGCTATCTCCAACGATCTGCTCGACTTCGTAGC
AATCGAGCACTCACATTACCTTTGATGCCGCATGCCTGGAATCGGATAAG
CCGTGGCGCCAAGTACGATCTAATAGTC
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