mRNA_M-pyrifera_M_contig84970.19807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84970.19807.1
Unique NamemRNA_M-pyrifera_M_contig84970.19807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: A0A482RAG7_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482RAG7_9EURY)

HSP 1 Score: 71.2 bits (173), Expect = 6.540e-12
Identity = 58/160 (36.25%), Postives = 72/160 (45.00%), Query Frame = 1
Query:    4 YRDGRWVRLPPQLLVEGDVIALQQGETSPAHV-------------------------------RSLDGPSAAGREL-------AAGEFVEVE--------GERRPVGKGGDAWRRS--SVVLSLCNDLRRFLVLETPAKARARALLRAPQRPQPSLVREL 339
            YRDG+WVRLPP LLV+GD+IAL   E +P  V                               RS D  +A  R+L       AA   V  E         E     +G  A +RS  S VL+LC D+RRF++LETP     +  LRAP RPQP    +L
Sbjct:  216 YRDGQWVRLPPLLLVKGDLIALMANENAPGRVKPVEQRAGSGGPALPRAPVTQPAVDALAGAVRSGDDVAARVRQLSVTSVATAASHSVPPETSKAGALPSEAEAEARGVAALQRSIDSNVLTLCGDMRRFVLLETPLVNTLQKRLRAPHRPQPLFFHQL 375          
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: A0A2D4BWP2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWP2_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 5.220e-10
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    4 YRDGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLDGPSAAGRELAAG--EFVEVEGERRPVGKGG-----------DAWRRSSVVLSLCNDLRRFLVLETP 270
            YRD +W RLP  LLVEGDV+AL  G+ +P  VR LD    A    + G  E V   G + P  +             +A   + ++LSLC D+R F +LETP
Sbjct:  228 YRDQQWQRLPMNLLVEGDVVALMSGDVAPGDVRPLDVHREASSSASGGATELVFARGTKLPASQSQHEPSLQHAARCNATFNAPLLLSLCGDMRVFEMLETP 329          
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: A0A8K1CDX3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDX3_PYTOL)

HSP 1 Score: 62.8 bits (151), Expect = 6.260e-9
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    4 YRDGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLDGPSAAGRELAAGEF---VEVEGERRPVGKGG-DAWRRSSVVLSLCNDLRRFLVLETP 270
            YRD +W RL   LLV+GDVIAL  G+ +P  VR+L  P A   E  A  F     +     P+     +A    S++LSLC D+R F++LETP
Sbjct:  192 YRDSQWQRLTMNLLVDGDVIALMSGDVAPGDVRALTDPPAT--ESMAAVFPRGATIPSSSEPLETTRCNATFNPSLLLSLCGDMRVFVMLETP 282          
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: A0A448Z4X5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4X5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.310e-9
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   10 DGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLDGPSA-----AGREL----AAGEFVEVEGERRPVGKGGDAWRRSSVVLSLCNDLRRFLVLETPAKARARALLRAPQR 312
            +G W R+P  LLV+GD IALQ G++ PA  R L+G  +      G+E+    ++GE V    E    G+       S  +L LCND+R F VLETP ++     LR PQR
Sbjct:  204 EGSWSRIPTLLLVKGDRIALQVGDSVPAECRVLEGKKSXTFFQVGQEITLESSSGESVSSLVEELSRGRTTLPSHDSDGLLRLCNDVRLFEVLETPLES----FLREPQR 309          
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: A0A024GIN4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GIN4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.460e-8
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = 1
Query:    4 YRDGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLDGPSAA---GRELAAGEFVEVEGERRPVGKGGDAWRRSSVVLSLCNDLRRFLVLETP 270
            YRD +W R+P  LL +GDVIAL  G+T+P  V+ LD  +      R       + ++ +R    +  +A  R+ ++LSLC D+R F++ ETP
Sbjct:  131 YRDAQWQRIPTNLLAKGDVIALTNGDTAPGDVQMLDHDTNTKQNARIFKRDSQILIQEKRNDTVRC-NATFRTELLLSLCGDMRIFIMKETP 221          
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: F0W418_9STRA (Uncharacterized protein AlNc14C15G1707 n=8 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W418_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.800e-7
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    4 YRDGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLDGPSAAGRELAA--GEFVEVEGERRPVGKGGDAWRRSSVVLSLCNDLRRFLVLETP 270
            YRD +W R+P  LL +GDVIAL  G+T+P  V+ LD      R   +   E   +  E+R      +A  +  ++LSLC D+R F++ ETP
Sbjct:  196 YRDLQWQRIPTNLLAKGDVIALTNGDTAPGDVQMLDHDINTKRNARSFKRECQILVQEKRNDTVRCNATFKPELLLSLCGDMRIFIMEETP 286          
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Match: A0A0P1AG98_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AG98_PLAHL)

HSP 1 Score: 53.9 bits (128), Expect = 7.830e-6
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    4 YRDGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLD-GPSAAGRELAAGEFVEVEGERRPVGKGGDAWRRSS-----VVLSLCNDLRRFLVLETP 270
            YRD +WVRLP  LLVEGDV+ L  G+ +P  V+S++   +      A G  +     R     G D  R ++     ++L LC ++R F +LETP
Sbjct:  201 YRDNQWVRLPMNLLVEGDVVGLMSGDIAPGDVQSVETNQNEQCHVYARGCKLPSWNSRH----GKDTTRCTATFDPPLLLKLCGEMRIFEMLETP 291          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84970.19807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A482RAG7_9EURY6.540e-1236.25Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
A0A2D4BWP2_PYTIN5.220e-1039.22Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CDX3_PYTOL6.260e-941.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A448Z4X5_9STRA8.310e-940.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A024GIN4_9STRA5.460e-836.96Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0W418_9STRA4.800e-738.46Uncharacterized protein AlNc14C15G1707 n=8 Tax=Alb... [more]
A0A0P1AG98_PLAHL7.830e-636.84Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84970contigM-pyrifera_M_contig84970:353..727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog65071.PYU1_T003141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transmembrane protein. Source PGD
EggNOG OGs1MDK2@121069,KOG4383@1,KOG4383@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.631598-CDS-M-pyrifera_M_contig84970:352..7271622816757.631598-CDS-M-pyrifera_M_contig84970:352..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84970 353..727 -
1692278160.5582073-CDS-M-pyrifera_M_contig84970:352..7271692278160.5582073-CDS-M-pyrifera_M_contig84970:352..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84970 353..727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84970.19807.1prot_M-pyrifera_M_contig84970.19807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84970 353..727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84970.19807.1

>prot_M-pyrifera_M_contig84970.19807.1 ID=prot_M-pyrifera_M_contig84970.19807.1|Name=mRNA_M-pyrifera_M_contig84970.19807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
VYRDGRWVRLPPQLLVEGDVIALQQGETSPAHVRSLDGPSAAGRELAAGE
FVEVEGERRPVGKGGDAWRRSSVVLSLCNDLRRFLVLETPAKARARALLR
APQRPQPSLVRELMAAWAVVVVVVV
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mRNA from alignment at M-pyrifera_M_contig84970:353..727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84970.19807.1 ID=mRNA_M-pyrifera_M_contig84970.19807.1|Name=mRNA_M-pyrifera_M_contig84970.19807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig84970:353..727- (Macrocystis pyrifera P11B4 male)
GTGTACAGAGACGGCAGGTGGGTGCGTCTCCCACCCCAGTTGCTGGTGGA AGGGGACGTAATCGCGTTGCAGCAAGGAGAGACTTCTCCTGCGCACGTGC GTAGTCTCGATGGGCCGAGTGCAGCGGGTAGGGAGCTTGCGGCAGGCGAG TTCGTGGAGGTGGAGGGGGAGAGGAGGCCGGTGGGCAAAGGAGGGGACGC GTGGAGAAGGTCGTCTGTTGTGCTTTCGCTTTGCAACGATTTACGGAGGT TTCTGGTGCTTGAAACGCCTGCAAAAGCGCGGGCAAGAGCGTTATTGCGA GCCCCACAACGTCCACAACCCTCATTGGTGCGAGAATTGATGGCAGCTTG GGCAGTGGTGGTGGTGGTGGTGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84970:353..727-

>mRNA_M-pyrifera_M_contig84970.19807.1 ID=mRNA_M-pyrifera_M_contig84970.19807.1|Name=mRNA_M-pyrifera_M_contig84970.19807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig84970:353..727- (Macrocystis pyrifera P11B4 male)
GTGTACAGAGACGGCAGGTGGGTGCGTCTCCCACCCCAGTTGCTGGTGGA
AGGGGACGTAATCGCGTTGCAGCAAGGAGAGACTTCTCCTGCGCACGTGC
GTAGTCTCGATGGGCCGAGTGCAGCGGGTAGGGAGCTTGCGGCAGGCGAG
TTCGTGGAGGTGGAGGGGGAGAGGAGGCCGGTGGGCAAAGGAGGGGACGC
GTGGAGAAGGTCGTCTGTTGTGCTTTCGCTTTGCAACGATTTACGGAGGT
TTCTGGTGCTTGAAACGCCTGCAAAAGCGCGGGCAAGAGCGTTATTGCGA
GCCCCACAACGTCCACAACCCTCATTGGTGCGAGAATTGATGGCAGCTTG
GGCAGTGGTGGTGGTGGTGGTGGTTGTGTACAGAGACGGCAGGTGGGTGC
GTCTCCCACCCCAGTTGCTGGTGGAAGGGGACGTAATCGCGTTGCAGCAA
GGAGAGACTTCTCCTGCGCACGTGCGTAGTCTCGATGGGCCGAGTGCAGC
GGGTAGGGAGCTTGCGGCAGGCGAGTTCGTGGAGGTGGAGGGGGAGAGGA
GGCCGGTGGGCAAAGGAGGGGACGCGTGGAGAAGGTCGTCTGTTGTGCTT
TCGCTTTGCAACGATTTACGGAGGTTTCTGGTGCTTGAAACGCCTGCAAA
AGCGCGGGCAAGAGCGTTATTGCGAGCCCCACAACGTCCACAACCCTCAT
TGGTGCGAGAATTGATGGCAGCTTGGGCAGTGGTGGTGGTGGTGGTGGTT
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