mRNA_M-pyrifera_M_contig84963.19805.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84963.19805.1
Unique NamemRNA_M-pyrifera_M_contig84963.19805.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A812L9C5_9DINO (RPL6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L9C5_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 1.030e-18
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 MPK---VDARQRFYGADHEGRPSARP-APRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            MP+   V+ R RFY AD    P  R   P+ TKLR+SITPGTVLIVLAGRFRGKRVVFL+QL SGLLLVTG
Sbjct:    1 MPRSAAVEKRSRFYPADDVRTPLNRNFTPKPTKLRASITPGTVLIVLAGRFRGKRVVFLKQLESGLLLVTG 71          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A383W8J8_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W8J8_TETOB)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-18
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   25 RFYGADHEGRPSARPAPRK-TKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            RFY AD   +P A  A RK TKLRSSITPGTVLI+LAGRF+GKRVVFL QLPSGLLLVTG
Sbjct:   56 RFYPADDVAKPLAHNAVRKPTKLRSSITPGTVLILLAGRFKGKRVVFLGQLPSGLLLVTG 115          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A2K3JN89_TRIPR (60S ribosomal protein l6-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JN89_TRIPR)

HSP 1 Score: 80.9 bits (198), Expect = 5.280e-18
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   10 VDARQRFYGADHEGRPSA-RPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            V+   +FY AD   +P   +  P+ TKLR+SITPGTVLI+LAGRF+GKRVVFL+QLPSGLLLVTG
Sbjct:   58 VEKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 122          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A699ZFE9_HAELA (Component of cytosolic 80S ribosome and 60S large subunit (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZFE9_HAELA)

HSP 1 Score: 82.0 bits (201), Expect = 6.290e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   25 RFYGADHEGRPSARPAPRK-TKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            RFY AD   +P +  A  K TKLRSSITPGTVLI+LAGRF+GKRVVFL+QLPSGLLLVTG
Sbjct:   56 RFYPADDVPKPLSHKAVHKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTG 115          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: UPI00125D482B (60S ribosomal protein L6-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D482B)

HSP 1 Score: 82.8 bits (203), Expect = 7.370e-18
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    4 PKVDARQRFYGADHEGRPSA-RPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            P  +   +FY AD   +P   +  P+ TKLRSSITPGTVLI+LAGRF+GKRVVFL+QLPSGLLLVTG
Sbjct:   52 PAAEKPPKFYPADDVKKPLVNKHKPKLTKLRSSITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTG 118          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A1M2V930_TRAPU (60S ribosomal protein L6 n=2 Tax=Trametes TaxID=5324 RepID=A0A1M2V930_TRAPU)

HSP 1 Score: 82.8 bits (203), Expect = 8.630e-18
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 1
Query:   25 RFYGADHEGRPS-ARPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            RFY A+   +P  +R AP+ TKLRSSITPGTVLI+LAGRFRGKRVVFL+QL SGLLLVTG
Sbjct:   66 RFYPAEDVRQPKKSRKAPKPTKLRSSITPGTVLILLAGRFRGKRVVFLKQLDSGLLLVTG 125          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: UPI00125E8FB3 (60S ribosomal protein L6-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E8FB3)

HSP 1 Score: 82.4 bits (202), Expect = 1.000e-17
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    4 PKVDARQRFYGADHEGRPSA-RPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            P  +   +FY AD   +P   +  P++TKLRSSITPGTVLI+L+GRF+GKRVVFL+QLPSGLLLVTG
Sbjct:   50 PAAEKPPKFYPADDVKKPLMNKHKPKQTKLRSSITPGTVLIILSGRFKGKRVVFLKQLPSGLLLVTG 116          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A2Z7BZ57_9LAMI (Ribosomal_L6e_N domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BZ57_9LAMI)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-17
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    4 PKVDARQRFYGADHEGRP-SARPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            P  +  Q+FY AD   +P S +  P+ TKLR+SITPGTVLI+LAGRF+GKRVVFL+QL SGLLLVTG
Sbjct:   56 PVAEKPQKFYPADDVKKPLSNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLTSGLLLVTG 122          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A1J3EMR0_NOCCA (60S ribosomal protein L6-3 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3EMR0_NOCCA)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-17
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    7 KVDARQRFYGADHEGRP--SARPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            K     R+Y AD   RP  S +   + T+LRSSITPGTVLIVLAGRFRGKRVVFL+QL SGLLLVTG
Sbjct:   29 KKQGEPRWYAADDVKRPIPSRKSHAKPTRLRSSITPGTVLIVLAGRFRGKRVVFLKQLASGLLLVTG 95          
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Match: A0A068UR64_COFCA (60S ribosomal protein L6 n=2 Tax=Coffea TaxID=13442 RepID=A0A068UR64_COFCA)

HSP 1 Score: 82.0 bits (201), Expect = 1.560e-17
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    4 PKVDARQRFYGADHEGRPSA-RPAPRKTKLRSSITPGTVLIVLAGRFRGKRVVFLQQLPSGLLLVTG 201
            P V+   +FY AD   +P A +  P+ TKLR+SITPGTVLI+LAGRF+GKRVVFL+QL SGLLLVTG
Sbjct:   56 PAVEKPAKFYPADDVKKPLANKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLTSGLLLVTG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84963.19805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812L9C5_9DINO1.030e-1869.01RPL6 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A383W8J8_TETOB1.720e-1878.33Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A2K3JN89_TRIPR5.280e-1866.1560S ribosomal protein l6-like n=1 Tax=Trifolium pr... [more]
A0A699ZFE9_HAELA6.290e-1875.00Component of cytosolic 80S ribosome and 60S large ... [more]
UPI00125D482B7.370e-1865.6760S ribosomal protein L6-like n=1 Tax=Ipomoea tril... [more]
A0A1M2V930_TRAPU8.630e-1875.0060S ribosomal protein L6 n=2 Tax=Trametes TaxID=53... [more]
UPI00125E8FB31.000e-1764.1860S ribosomal protein L6-like n=2 Tax=Ipomoea TaxI... [more]
A0A2Z7BZ57_9LAMI1.110e-1765.67Ribosomal_L6e_N domain-containing protein n=1 Tax=... [more]
A0A1J3EMR0_NOCCA1.280e-1767.1660S ribosomal protein L6-3 (Fragment) n=1 Tax=Nocc... [more]
A0A068UR64_COFCA1.560e-1765.6760S ribosomal protein L6 n=2 Tax=Coffea TaxID=1344... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84963contigM-pyrifera_M_contig84963:555..755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue3e-14
Seed eggNOG ortholog81985.XP_006300334.1
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.60S ribosomal protein
EggNOG OGs37QK3@33090,3GEFF@35493,3HWJH@3699,COG2163@1,KOG1694@2759
COG Functional cat.J
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.5563715-CDS-M-pyrifera_M_contig84963:554..7551622816757.5563715-CDS-M-pyrifera_M_contig84963:554..755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84963 555..755 +
1692278160.526277-CDS-M-pyrifera_M_contig84963:554..7551692278160.526277-CDS-M-pyrifera_M_contig84963:554..755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84963 555..755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84963.19805.1prot_M-pyrifera_M_contig84963.19805.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84963 555..755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84963.19805.1

>prot_M-pyrifera_M_contig84963.19805.1 ID=prot_M-pyrifera_M_contig84963.19805.1|Name=mRNA_M-pyrifera_M_contig84963.19805.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MPKVDARQRFYGADHEGRPSARPAPRKTKLRSSITPGTVLIVLAGRFRGK
RVVFLQQLPSGLLLVTG
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mRNA from alignment at M-pyrifera_M_contig84963:555..755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84963.19805.1 ID=mRNA_M-pyrifera_M_contig84963.19805.1|Name=mRNA_M-pyrifera_M_contig84963.19805.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig84963:555..755+ (Macrocystis pyrifera P11B4 male)
ATGCCCAAGGTAGATGCTCGGCAGCGGTTCTATGGGGCTGACCACGAGGG TCGCCCATCTGCGCGGCCTGCGCCACGCAAGACCAAGTTGCGAAGCTCCA TCACCCCCGGAACCGTGTTGATTGTGCTTGCCGGTCGATTCCGAGGCAAG CGTGTGGTGTTCTTGCAACAGCTTCCTTCTGGACTGCTCCTTGTCACTGG T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84963:555..755+

>mRNA_M-pyrifera_M_contig84963.19805.1 ID=mRNA_M-pyrifera_M_contig84963.19805.1|Name=mRNA_M-pyrifera_M_contig84963.19805.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig84963:555..755+ (Macrocystis pyrifera P11B4 male)
ATGCCCAAGGTAGATGCTCGGCAGCGGTTCTATGGGGCTGACCACGAGGG
TCGCCCATCTGCGCGGCCTGCGCCACGCAAGACCAAGTTGCGAAGCTCCA
TCACCCCCGGAACCGTGTTGATTGTGCTTGCCGGTCGATTCCGAGGCAAG
CGTGTGGTGTTCTTGCAACAGCTTCCTTCTGGACTGCTCCTTGTCACTGG
TATGCCCAAGGTAGATGCTCGGCAGCGGTTCTATGGGGCTGACCACGAGG
GTCGCCCATCTGCGCGGCCTGCGCCACGCAAGACCAAGTTGCGAAGCTCC
ATCACCCCCGGAACCGTGTTGATTGTGCTTGCCGGTCGATTCCGAGGCAA
GCGTGTGGTGTTCTTGCAACAGCTTCCTTCTGGACTGCTCCTTGTCACTG
GT
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