mRNA_M-pyrifera_M_contig109400.1969.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109400.1969.1
Unique NamemRNA_M-pyrifera_M_contig109400.1969.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A7S1CQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ04_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.320e-26
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   13 CSDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRKSPP-----FNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDIL-ECTLQPGEMMYVPPDWYHSTLNVGHTIAM 336
            CS   +++G S +GLPFH H  V  N V++GRKRWFLSR +P      FN K    +W +E LP +    +      A  +D L ECTL+PGE+M+VP  WYH+TLN+G T+A+
Sbjct:  208 CSLKHVAIGHSRSGLPFHNHDAVAGNEVVFGRKRWFLSRDAPGGPGVGFNVKATSLQWALETLPRVPPTLLASQETEANEEDRLYECTLRPGEVMFVPAGWYHATLNIGETVAV 321          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: L1ITG3_GUITC (JmjC domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITG3_GUITC)

HSP 1 Score: 89.4 bits (220), Expect = 7.550e-20
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   16 SDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRKS--PPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTIAMA 339
            S     +G SG+G+PFH+H    S  V+WGRKRWFL  K   P F+P      W+      + + + G         D+LECT++PGE++Y P +W+H+TLN+G ++ M+
Sbjct:   99 SSLSFGIGGSGSGVPFHVHGPGFSE-VLWGRKRWFLMPKGVQPDFDPDETTLVWLRTRYNSMLQAEGGH--------DLLECTIEPGELLYFPDNWFHATLNIGQSVFMS 199          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A7S4NQ06_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NQ06_GUITH)

HSP 1 Score: 89.4 bits (220), Expect = 3.510e-19
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   16 SDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRKS--PPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTIAMA 339
            S     +G SG+G+PFH+H    S  V+WGRKRWFL  K   P F+P      W+      + + + G         D+LECT++PGE++Y P +W+H+TLN+G ++ M+
Sbjct:  183 SSLSFGIGGSGSGVPFHVHGPGFSE-VLWGRKRWFLMPKGVQPDFDPDETTLVWLRTRYNSMLQAEGGH--------DLLECTIEPGELLYFPDNWFHATLNIGQSVFMS 283          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A7S0JV43_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JV43_CAFRO)

HSP 1 Score: 89.0 bits (219), Expect = 2.390e-18
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   10 QCSDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRKSPP--FNPKHNVGKWVVEVLPYLER------GKVGDPSAT-------AQRDDILECTLQPGEMMYVPPDWYHSTLN 315
            QC+   +  GP+ +GLP+H H+ V +N+++ GRKRW L R  PP  FNP+    +W    LP L R        VGD ++           D +  C  +PGE +YVP  WYH+TLN
Sbjct:  188 QCAPAIVGAGPTWSGLPWHFHETVEANLLLAGRKRWGLRRTPPPGGFNPRRPAWEWFERWLPGLLRDNKTALASVGDAASADAGGPEGGAADPLFVCEQRPGEAIYVPDGWYHTTLN 304          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A5A8C568_CAFRO (JmjC domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C568_CAFRO)

HSP 1 Score: 89.0 bits (219), Expect = 2.680e-18
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   10 QCSDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRKSPP--FNPKHNVGKWVVEVLPYLER------GKVGDPSAT-------AQRDDILECTLQPGEMMYVPPDWYHSTLN 315
            QC+   +  GP+ +GLP+H H+ V +N+++ GRKRW L R  PP  FNP+    +W    LP L R        VGD ++           D +  C  +PGE +YVP  WYH+TLN
Sbjct:  170 QCAPAIVGAGPTWSGLPWHFHETVEANLLLAGRKRWGLRRTPPPGGFNPRRPAWEWFERWLPGLLRDNKTALASVGDAASADAGGPEGGAADPLFVCEQRPGEAIYVPDGWYHTTLN 286          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A0S4JMT2_BODSA (JmjC domain-containing protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JMT2_BODSA)

HSP 1 Score: 86.3 bits (212), Expect = 8.550e-18
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1
Query:   10 QCSDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRK--------SPPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTIAMA 339
            Q S     LGP+G+G+PFH H  V  N VI+G+KRW+L            P F+P  +  +W+  V P           + A+ D + EC   PGE +Y+P  W+HSTLN+G T+ MA
Sbjct:  218 QYSSLSFGLGPAGSGVPFHTHGHVF-NEVIYGKKRWWLQAPVFPLVDDIGPRFDPDASSLQWLEYVRPTY---------SPAETDALHECVCAPGETLYIPSFWHHSTLNIGETVFMA 325          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: UPI001F076BA0 (jmjC domain-containing protein 8 isoform X1 n=3 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F076BA0)

HSP 1 Score: 84.3 bits (207), Expect = 3.370e-17
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   37 GPSGTGLPFHLHQEVCSNMVIWGRKRWFL--SRKSPPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTI 330
            GP GTG+PFH H    S  VI+GRKRWFL    K+P F+P H    WV +V P+L            + +  L+CT+QPGE++Y P  W+H+TLN+  ++
Sbjct:  210 GP-GTGVPFHWHGPGYSE-VIYGRKRWFLYPPDKAPHFHPNHTTLSWVRDVSPHLP-----------EEERPLQCTIQPGEVLYFPDRWWHATLNLDTSV 296          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A7I8VA03_9ANNE (DgyrCDS1296 n=2 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VA03_9ANNE)

HSP 1 Score: 82.4 bits (202), Expect = 1.190e-16
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   28 MSLGPSG--TGLPFHLHQEVCSNMVIWGRKRWFL--SRKSPPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTI 330
            +S G +G  TG+PFH+H    +   I+GRKRWFL     SP FNP      W++E  P LE           + +  LECTL+PGE++++P  W+H+TLN+ + +
Sbjct:  173 LSFGVAGALTGVPFHIHGPTFAE-TIYGRKRWFLYPPSASPQFNPDSTTLLWILESYPKLE-----------EAEKPLECTLKPGEILFIPDRWWHATLNLDNAV 265          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: UPI00193A78F9 (jmjC domain-containing protein 8-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A78F9)

HSP 1 Score: 80.5 bits (197), Expect = 7.940e-16
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    1 VKEQCSDTRMSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLS--RKSPPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTIAMA 339
            + E+       +  +GTG+PFH H    S  VI G KRWFL    K P F+P  N+ +WV++  P L +            +  LECT++PG+++Y P  W+HSTLN+  ++ M+
Sbjct:  184 LPEKTGAYSFGIAAAGTGVPFHFHGPGFSE-VIHGSKRWFLYPYEKMPKFDPDQNMLRWVLDEYPKLTKD-----------NKPLECTIKPGDVLYFPDRWWHSTLNLKTSVFMS 286          
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Match: A0A8B7RT20_HIPAR (jmjC domain-containing protein 8 isoform X1 n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7RT20_HIPAR)

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-15
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   43 SGTGLPFHLHQEVCSNMVIWGRKRWFL--SRKSPPFNPKHNVGKWVVEVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHTI 330
            +GTG+PFH H    S  VI+GRKRWFL    K+P F+P      W+ ++ P L       PSA       LECT+QPGE++Y P  W+H+TLN+  ++
Sbjct:  229 AGTGVPFHWHGPGFSE-VIYGRKRWFLYPPEKTPKFHPNKTTLSWLRDMYPALT------PSAQP-----LECTIQPGEVLYFPDRWWHATLNLDTSV 314          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109400.1969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CQ04_9STRA3.320e-2645.61Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
L1ITG3_GUITC7.550e-2038.18JmjC domain-containing protein n=1 Tax=Guillardia ... [more]
A0A7S4NQ06_GUITH3.510e-1938.18Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S0JV43_CAFRO2.390e-1838.46Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8C568_CAFRO2.680e-1838.46JmjC domain-containing protein n=3 Tax=Cafeteria r... [more]
A0A0S4JMT2_BODSA8.550e-1838.14JmjC domain-containing protein n=1 Tax=Bodo saltan... [more]
UPI001F076BA03.370e-1743.00jmjC domain-containing protein 8 isoform X1 n=3 Ta... [more]
A0A7I8VA03_9ANNE1.190e-1639.05DgyrCDS1296 n=2 Tax=Dimorphilus gyrociliatus TaxID... [more]
UPI00193A78F97.940e-1635.65jmjC domain-containing protein 8-like n=1 Tax=Stye... [more]
A0A8B7RT20_HIPAR1.100e-1542.86jmjC domain-containing protein 8 isoform X1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109400contigM-pyrifera_M_contig109400:223..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog55529.EKX39179
Preferred nameJMJD8
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin-like domain
EggNOG OGsKOG2131@1,KOG2131@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size339
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.5374718-UTR-M-pyrifera_M_contig109400:222..2491622815604.5374718-UTR-M-pyrifera_M_contig109400:222..249Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109400 223..249 +
1692277483.6895866-UTR-M-pyrifera_M_contig109400:222..2491692277483.6895866-UTR-M-pyrifera_M_contig109400:222..249Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109400 223..249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.5539923-CDS-M-pyrifera_M_contig109400:249..5611622815604.5539923-CDS-M-pyrifera_M_contig109400:249..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109400 250..561 +
1692277483.7072613-CDS-M-pyrifera_M_contig109400:249..5611692277483.7072613-CDS-M-pyrifera_M_contig109400:249..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109400 250..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109400.1969.1prot_M-pyrifera_M_contig109400.1969.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109400 250..561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109400.1969.1

>prot_M-pyrifera_M_contig109400.1969.1 ID=prot_M-pyrifera_M_contig109400.1969.1|Name=mRNA_M-pyrifera_M_contig109400.1969.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MSLGPSGTGLPFHLHQEVCSNMVIWGRKRWFLSRKSPPFNPKHNVGKWVV
EVLPYLERGKVGDPSATAQRDDILECTLQPGEMMYVPPDWYHSTLNVGHT
IAMA
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mRNA from alignment at M-pyrifera_M_contig109400:223..561+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109400.1969.1 ID=mRNA_M-pyrifera_M_contig109400.1969.1|Name=mRNA_M-pyrifera_M_contig109400.1969.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig109400:223..561+ (Macrocystis pyrifera P11B4 male)
GTAAAAGAACAGTGTTCTGACACAAGAATGTCTCTTGGTCCTTCTGGAAC TGGCTTGCCATTCCACCTGCATCAAGAAGTGTGCTCCAACATGGTGATTT GGGGTAGGAAGCGATGGTTCTTGTCTCGCAAGTCCCCCCCATTCAACCCC AAGCATAATGTAGGGAAATGGGTGGTGGAAGTTCTGCCTTACTTGGAACG AGGCAAGGTTGGGGATCCCAGCGCCACCGCACAGCGAGATGACATTCTAG AGTGTACATTGCAGCCTGGAGAAATGATGTATGTTCCCCCTGACTGGTAC CACTCCACACTCAATGTGGGTCACACCATCGCTATGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109400:223..561+

>mRNA_M-pyrifera_M_contig109400.1969.1 ID=mRNA_M-pyrifera_M_contig109400.1969.1|Name=mRNA_M-pyrifera_M_contig109400.1969.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig109400:223..561+ (Macrocystis pyrifera P11B4 male)
ATGTCTCTTGGTCCTTCTGGAACTGGCTTGCCATTCCACCTGCATCAAGA
AGTGTGCTCCAACATGGTGATTTGGGGTAGGAAGCGATGGTTCTTGTCTC
GCAAGTCCCCCCCATTCAACCCCAAGCATAATGTAGGGAAATGGGTGGTG
GAAGTTCTGCCTTACTTGGAACGAGGCAAGGTTGGGGATCCCAGCGCCAC
CGCACAGCGAGATGACATTCTAGAGTGTACATTGCAGCCTGGAGAAATGA
TGTATGTTCCCCCTGACTGGTACCACTCCACACTCAATGTGGGTCACACC
ATCGCTATGGCTATGTCTCTTGGTCCTTCTGGAACTGGCTTGCCATTCCA
CCTGCATCAAGAAGTGTGCTCCAACATGGTGATTTGGGGTAGGAAGCGAT
GGTTCTTGTCTCGCAAGTCCCCCCCATTCAACCCCAAGCATAATGTAGGG
AAATGGGTGGTGGAAGTTCTGCCTTACTTGGAACGAGGCAAGGTTGGGGA
TCCCAGCGCCACCGCACAGCGAGATGACATTCTAGAGTGTACATTGCAGC
CTGGAGAAATGATGTATGTTCCCCCTGACTGGTACCACTCCACACTCAAT
GTGGGTCACACCATCGCTATGGCT
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