mRNA_M-pyrifera_M_contig109394.1963.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109394.1963.1
Unique NamemRNA_M-pyrifera_M_contig109394.1963.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: L0DQ77_SINAD (HEAT repeat-containing protein n=3 Tax=Singulisphaera acidiphila TaxID=466153 RepID=L0DQ77_SINAD)

HSP 1 Score: 70.5 bits (171), Expect = 1.220e-10
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:   22 LGRIGPDATAAIPALNEAMKAQGGQRLIRVAHAL----GQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEEPLGRALDHEEEPVRVGA-LTALATIGPRT----ADVADRLSQLTTDGSIEQ------RIAALRAVA------ATSIDRDQMLTMLINSLT 558
            LGR+GP A  A+PAL  A+K +     +  A+AL    G+   A++P +   L+ D+ N R  A  AL  +N       P L  AL + D      AA  L R+  Q ++ +    D  ++P+   + LTAL  +GP      + + DRL++   D    Q      R+A   AVA      AT+  R Q + +   +LT
Sbjct: 1394 LGRLGPGAKEAVPALTLALKDKTAAVRVATANALRLIDGEQEAAVVPVLADGLQDDDANVRRAATEALARINPVPAELAPNLTTALEEADGVTRLHAASALARLPGQTDKAVAVLADLLDDPLLCSSSLTALDQLGPTAKGAFSKLVDRLNEAYDDPVFGQLANTLARVAGAEAVAPLLKAHATADTRHQPMVVAALALT 1593          
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A517PWZ1_9PLAN (Putative lyase n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517PWZ1_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 4.170e-8
Identity = 59/200 (29.50%), Postives = 88/200 (44.00%), Query Frame = 1
Query:    4 FQSTITLGRIGPDATAAIPALNEAMKAQGGQRLIRVAHALGQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEEP---LGRALDHEEEPVRVGALTALATIGPRTADVADRLSQL--TTDGSIEQRIAALRAVAATSIDRDQMLTMLINSLTDADEGVRSTA 588
            +++  +L ++GP A  AIP L  A+   G      V +    +GP +            RNA   A+ ++G       P VP LI AL D D    A AA TL ++GP A      L R L+  E  VR  A+ A+A +G     V   L Q     D     R++ L ++A        ++ +LI +L D+D  V + A
Sbjct:   43 YKAARSLQKLGPTAEPAIPPLIAALNDLGAPTKYDVQY----LGPRV------------RNAASDALASIGR------PTVPALIKALRDKDPATRAMAADTLAKLGPDANASFAELSRTLNDPESWVRDSAVAAIARVGAAPQVVVPLLEQKYRRADKDDYIRVSILESLANADPQATMVMPLLIEALDDSDGDVMAAA 220          
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A7Y2F527_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F527_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 5.400e-7
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  190 REGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEEPLGRALDHEEEPVRVGALTALATIGPRTADVAD 438
            R  A+ +LGW+NA A  AVP L  A  D++  V  QAA +L R+GP A+  L R LD ++E VR  + T L  +    A V D
Sbjct:  151 RVAALDSLGWMNAHAPRAVPILADATSDENDDVRRQAAWSLSRIGPAAQNALTRGLDSDDEEVRAISATGLGKLDQLPASVRD 233          
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A5S9IRK7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IRK7_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.930e-6
Identity = 36/146 (24.66%), Postives = 70/146 (47.95%), Query Frame = 1
Query:    7 QSTITLGRIGPDATAAIPALNEAMKAQGGQRLIRVAHALGQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQAEE---PLGRALDHEEEPVRVGALTALATIGPRTADVA 435
             S + LG+IGPDA++A+P L E + ++  + ++R    L Q+G   +P + + L   ++N +   +R L  + ++   A   ++  L  +D +V       L R+   A E    L + +  E+   R+  +     +G R  D+A
Sbjct:   47 SSIVELGKIGPDASSAVPLLIECLSSKNSRIVLRTIRTLQQIGTRGLPDLQEALHRKDKNIQRKILRVLCGIESQFELASFDVVALLQSEDVRVRIYTLNLLERLPSHAAEVVPELSQIIVSEDPEQRMAVVKVFCALGKRVMDMA 192          
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: B7K6K0_RIPO1 (HEAT domain containing protein n=1 Tax=Rippkaea orientalis (strain PCC 8801) TaxID=41431 RepID=B7K6K0_RIPO1)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-5
Identity = 57/189 (30.16%), Postives = 86/189 (45.50%), Query Frame = 1
Query:   55 IPALNEAMKAQGGQRLIRVAHALGQMGPAIIPTMIKDLEG-DNRNAREGAVRALGWLNAEAVPAVPQLIVA-LGDDDAKVHAQAAQTLGRMGPQAEEPLGRALDHEEEP--VRVGALTALATIGPRTADVADRLSQLTTDGSIEQRIAALRAVA--ATSIDRDQMLTMLINSLTDADEGVR--STAIVG 597
            + +L E +    G   +R A  LG++G    P ++  L    N   R  A + L  +       +PQLI + L D+D  V   +   L RMG     PL   L   + P   +  A  ALA IGP+       L+Q  +  S   R A + A+A  A S    ++L +L+NSL+D D  VR  + A++G
Sbjct:   36 LKSLVECLGDTRGMTRLRAAQTLGEIGQPATPFLLDALANHSNVVVRRAAAKTLTLIADPQT--IPQLIESFLNDEDTVVQGSSVGALARMGEAGVFPLLNILGSPDVPESAKGHAAWALAFIGPQAKQ---HLNQAVSHDSPVVRAAVVGAIAKVAASEPDQELLDILVNSLSDPDSNVRCETAAVLG 219          
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Match: A0A3E1EQC2_9BACT (HEAT repeat n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EQC2_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 9.060e-5
Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = 1
Query:  106 RVAHALGQMGPAIIPTMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQAAQTLGRMGPQA 333
            R A ALG+     +P ++  L G+NR+AR GA+ ALG L   A  A PQL   L + D  V   AA  L  +GP A
Sbjct:  486 RSAAALGKRDGDHLPVLLTMLAGENRDARYGAIEALGALGPRADAAAPQLRALLTNSDVWVQCLAAAALPELGPDA 561          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109394.1963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
L0DQ77_SINAD1.220e-1030.00HEAT repeat-containing protein n=3 Tax=Singulispha... [more]
A0A517PWZ1_9PLAN4.170e-829.50Putative lyase n=3 Tax=Gimesia TaxID=1649453 RepID... [more]
A0A7Y2F527_9BACT5.400e-742.17Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A5S9IRK7_9BACT7.930e-624.66Uncharacterized protein n=1 Tax=Candidatus Uabimic... [more]
B7K6K0_RIPO11.740e-530.16HEAT domain containing protein n=1 Tax=Rippkaea or... [more]
A0A3E1EQC2_9BACT9.060e-542.11HEAT repeat n=1 Tax=Verrucomicrobia bacterium TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109394contigM-pyrifera_M_contig109394:3..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.9
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog497964.CfE428DRAFT_0187
Hectar predicted targeting categoryother localisation
EggNOG free text desc.deoxyhypusine monooxygenase activity
EggNOG OGsCOG1413@1,COG1413@2
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.1022832-CDS-M-pyrifera_M_contig109394:2..6021622815604.1022832-CDS-M-pyrifera_M_contig109394:2..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109394 3..602 +
1692277483.4663749-CDS-M-pyrifera_M_contig109394:2..6021692277483.4663749-CDS-M-pyrifera_M_contig109394:2..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109394 3..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109394.1963.1prot_M-pyrifera_M_contig109394.1963.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109394 3..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109394.1963.1

>prot_M-pyrifera_M_contig109394.1963.1 ID=prot_M-pyrifera_M_contig109394.1963.1|Name=mRNA_M-pyrifera_M_contig109394.1963.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
WFQSTITLGRIGPDATAAIPALNEAMKAQGGQRLIRVAHALGQMGPAIIP
TMIKDLEGDNRNAREGAVRALGWLNAEAVPAVPQLIVALGDDDAKVHAQA
AQTLGRMGPQAEEPLGRALDHEEEPVRVGALTALATIGPRTADVADRLSQ
LTTDGSIEQRIAALRAVAATSIDRDQMLTMLINSLTDADEGVRSTAIVGL
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mRNA from alignment at M-pyrifera_M_contig109394:3..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109394.1963.1 ID=mRNA_M-pyrifera_M_contig109394.1963.1|Name=mRNA_M-pyrifera_M_contig109394.1963.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109394:3..602+ (Macrocystis pyrifera P11B4 male)
TGGTTTCAATCGACCATCACGCTTGGCCGCATTGGTCCCGACGCGACTGC TGCGATCCCTGCTCTCAATGAGGCGATGAAGGCTCAGGGAGGGCAACGCC TGATTCGTGTGGCACATGCGCTCGGTCAGATGGGTCCGGCGATCATTCCC ACGATGATTAAAGACCTTGAGGGAGATAACAGGAACGCACGAGAGGGAGC GGTACGTGCTCTGGGCTGGTTGAACGCTGAAGCAGTTCCCGCGGTCCCTC AACTCATCGTCGCGTTGGGAGACGACGATGCCAAAGTTCATGCACAAGCG GCACAAACGCTGGGCCGGATGGGACCTCAGGCGGAAGAACCACTCGGTCG TGCTCTTGATCATGAGGAGGAACCCGTCCGCGTCGGAGCCTTGACCGCAC TTGCCACAATCGGCCCACGGACTGCTGATGTTGCGGATCGACTTTCACAA CTCACAACAGACGGTTCGATTGAACAGCGTATCGCTGCCCTCCGAGCCGT CGCGGCGACGTCGATTGATCGCGACCAGATGCTCACCATGCTGATCAATT CGCTCACGGATGCGGATGAAGGCGTTCGATCAACAGCGATTGTCGGGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109394:3..602+

>mRNA_M-pyrifera_M_contig109394.1963.1 ID=mRNA_M-pyrifera_M_contig109394.1963.1|Name=mRNA_M-pyrifera_M_contig109394.1963.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig109394:3..602+ (Macrocystis pyrifera P11B4 male)
TGGTTTCAATCGACCATCACGCTTGGCCGCATTGGTCCCGACGCGACTGC
TGCGATCCCTGCTCTCAATGAGGCGATGAAGGCTCAGGGAGGGCAACGCC
TGATTCGTGTGGCACATGCGCTCGGTCAGATGGGTCCGGCGATCATTCCC
ACGATGATTAAAGACCTTGAGGGAGATAACAGGAACGCACGAGAGGGAGC
GGTACGTGCTCTGGGCTGGTTGAACGCTGAAGCAGTTCCCGCGGTCCCTC
AACTCATCGTCGCGTTGGGAGACGACGATGCCAAAGTTCATGCACAAGCG
GCACAAACGCTGGGCCGGATGGGACCTCAGGCGGAAGAACCACTCGGTCG
TGCTCTTGATCATGAGGAGGAACCCGTCCGCGTCGGAGCCTTGACCGCAC
TTGCCACAATCGGCCCACGGACTGCTGATGTTGCGGATCGACTTTCACAA
CTCACAACAGACGGTTCGATTGAACAGCGTATCGCTGCCCTCCGAGCCGT
CGCGGCGACGTCGATTGATCGCGACCAGATGCTCACCATGCTGATCAATT
CGCTCACGGATGCGGATGAAGGCGTTCGATCAACAGCGATTGTCGGGCTG
TGGTTTCAATCGACCATCACGCTTGGCCGCATTGGTCCCGACGCGACTGC
TGCGATCCCTGCTCTCAATGAGGCGATGAAGGCTCAGGGAGGGCAACGCC
TGATTCGTGTGGCACATGCGCTCGGTCAGATGGGTCCGGCGATCATTCCC
ACGATGATTAAAGACCTTGAGGGAGATAACAGGAACGCACGAGAGGGAGC
GGTACGTGCTCTGGGCTGGTTGAACGCTGAAGCAGTTCCCGCGGTCCCTC
AACTCATCGTCGCGTTGGGAGACGACGATGCCAAAGTTCATGCACAAGCG
GCACAAACGCTGGGCCGGATGGGACCTCAGGCGGAAGAACCACTCGGTCG
TGCTCTTGATCATGAGGAGGAACCCGTCCGCGTCGGAGCCTTGACCGCAC
TTGCCACAATCGGCCCACGGACTGCTGATGTTGCGGATCGACTTTCACAA
CTCACAACAGACGGTTCGATTGAACAGCGTATCGCTGCCCTCCGAGCCGT
CGCGGCGACGTCGATTGATCGCGACCAGATGCTCACCATGCTGATCAATT
CGCTCACGGATGCGGATGAAGGCGTTCGATCAACAGCGATTGTCGGGCTG
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